Rw1G001800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010027
Physical Location & Seq
Reverse (-)
3190773 .. 3191704
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001800.1

Sequence Viewer

Length: 267 bp
ATGGGCATGAAGTTTGTGGAGCTTTTGGATCAGGGAGTCAGAGTGGCCGCCAGGTTTCACTCCAATTGCCCCCAGACCAGTCGCAAGTACTACCACCCTCCGGCGCCCCACCACCATGACGACAACCACCACCACCACCATCACCACGACAACAACAACAACACCCACCACGCTTTAGCCGGCGGCGACGCGACGGCGACTGCGACGGTGGGGATGCATTTTAAGAATGCTGAGAGCAGCAATGAGTTTATTCTTTTCTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.93

Weight (kDa)

6.72

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 48, 183
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 100
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 3 cut(s) 48, 184, 238
BlsI GCNGC 3 cut(s) 49, 185, 239
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 101, 180
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 2 cut(s) 48, 183
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 179
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 7, 116
CviJI RGCY 3 cut(s) 22, 47, 179
CviKI_1 RGCY 3 cut(s) 22, 47, 179
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 231
DinI GGCGCC 1 cut(s) 105
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
FaeI CATG 2 cut(s) 10, 119
FaiI YATR 2 cut(s) 8, 117
FatI CATG 2 cut(s) 6, 115
Fnu4HI GCNGC 3 cut(s) 48, 184, 238
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 48, 184, 238
GlaI GCGC 1 cut(s) 105
GluI GCNGC 3 cut(s) 48, 184, 238
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 101, 180
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 10, 119
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 36
HpaII CCGG 2 cut(s) 101, 180
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 41
Hpy99I CGWCG 3 cut(s) 191, 196, 208
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 10, 119
HspAI GCGC 1 cut(s) 104
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 17, 37, 64, 86, 91, 114, 193
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 204
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MfeI CAATTG 1 cut(s) 64
MluCI AATT 1 cut(s) 64
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 219
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 2 cut(s) 101, 180
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 181
NarI GGCGCC 1 cut(s) 104
NdeII GATC 1 cut(s) 28
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 2 cut(s) 10, 119
NlaIV GGNNCC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PctI GAATGC 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 181
PkrI GCNGC 3 cut(s) 49, 185, 239
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 105
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 48, 184, 238
Sau3AI GATC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 52
SetI ASST 2 cut(s) 24, 56
SfaNI GCATC 1 cut(s) 204
SfoI GGCGCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 64
SsiI CCGC 2 cut(s) 48, 183
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 208
TasI AATT 1 cut(s) 64
TatI WGTACW 1 cut(s) 87
TauI GCSGC 2 cut(s) 50, 186
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.