Prupe.8G033700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010027
Physical Location & Seq
Reverse (-)
3124061 .. 3124321
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G033700.1

Sequence Viewer

Length: 261 bp
ATGGGGATGAAGTTTGTGGAGATTTTGGATCAAGGCGCGAGAATAGTTTCCAGGTCTTATTCTCATTGCCCCCAAACCAGCCGGTTGTACTACCATCCTCCCCTAGCTAAACATGACGACTGCCACCATCACCAGCACAACCAACATTTTGGAGATGGCACCACCACCTCCGGTGACGGTGATGCCACCACGTCCCAGAGCTGCTCATTTGGTCCCAGGGCAGCGGCTGATACTAATGAGTTTATTCTTTTTTCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.52

Weight (kDa)

6.19

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 36
AfaI GTAC 1 cut(s) 89
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 2 cut(s) 50, 215
AluBI AGCT 2 cut(s) 107, 201
AluI AGCT 2 cut(s) 107, 201
AlwI GGATC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 201, 221
Asp700I GAANNNNTTC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 122, 185, 191
AvaII GGWCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 188, 233
BccI CCATC 3 cut(s) 102, 135, 149
BciT130I CCWGG 2 cut(s) 52, 217
BfaI CTAG 1 cut(s) 104
BisI GCNGC 3 cut(s) 202, 222, 225
BlsI GCNGC 3 cut(s) 203, 223, 226
Bme1390I CCNGG 2 cut(s) 52, 217
Bme18I GGWCC 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 160, 214
BmrFI CCNGG 2 cut(s) 52, 217
BmsI GCATC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 215, 216
BsaWI WCCGGW 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 2 cut(s) 52, 217
BseDI CCNNGG 2 cut(s) 215, 216
BseGI GGATG 2 cut(s) 12, 94
BseMI GCAATG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 188, 233
Bsh1236I CGCG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 82, 171
BslFI GGGAC 2 cut(s) 178, 198
BsmFI GGGAC 2 cut(s) 178, 198
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 224
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 160, 214
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 215, 216
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 52, 217
Bst4CI ACNGT 1 cut(s) 179
BstF5I GGATG 2 cut(s) 12, 94
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 2 cut(s) 52, 217
BstSCI CCNGG 2 cut(s) 50, 215
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 188, 233
BstXI CCANNNNNNTGG 1 cut(s) 149
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 12, 94
CaiI CAGNNNCTG 1 cut(s) 227
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 81, 107, 201, 227
CviKI_1 RGCY 4 cut(s) 81, 107, 201, 227
CviQI GTAC 1 cut(s) 88
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 50, 215
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FaqI GGGAC 2 cut(s) 178, 198
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 202, 222, 225
FokI GGATG 2 cut(s) 19, 81
Fsp4HI GCNGC 3 cut(s) 202, 222, 225
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 202, 222, 225
HapII CCGG 2 cut(s) 82, 171
HhaI GCGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 2 cut(s) 82, 171
HphI GGTGA 3 cut(s) 122, 185, 191
Hpy188I TCNGA 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 9 cut(s) 37, 64, 91, 95, 146, 184, 202, 209, 229
Lsp1109I GCAGC 2 cut(s) 188, 233
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MnlI CCTC 2 cut(s) 108, 178
MroXI GAANNNNTTC 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 82, 171
MspR9I CCNGG 2 cut(s) 52, 217
MvaI CCWGG 2 cut(s) 52, 217
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 160, 214
NmuCI GTSAC 1 cut(s) 173
PasI CCCWGGG 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 46
PkrI GCNGC 3 cut(s) 203, 223, 226
Psp6I CCWGG 2 cut(s) 50, 215
PspGI CCWGG 2 cut(s) 50, 215
PspN4I GGNNCC 2 cut(s) 160, 214
PspPI GGNCC 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 3 cut(s) 202, 222, 225
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 52, 217
SetI ASST 5 cut(s) 56, 109, 170, 194, 203
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 212
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 50, 215
TaaI ACNGT 1 cut(s) 179
TaiI ACGT 1 cut(s) 194
TaqII GACCGA 1 cut(s) 244
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 227
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 201, 221
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.