Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010027

Physical Location & Seq

Genomic Coordinates Forward (+)

64632324 .. 64633653

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGCATGAAGTTTGTGGAGCTTTTGGATCAGGGAGTCAGAGTGGCCGCCAGGTTTCACTCCAATTGCCCCCAGACCAGTCGCAAGTACTACCACCCTCCGGCGCCCAACCACCATGACGACAACCACCACCACCACCACCATCACGACAACACCCTCCACGCTTTAGCAGGCGGCGACGCGACGGCGACGGCGGGGATGCATTTTAAGAATGCTGAGAGCAGCAATGAGTTTATTCTTTTCTCTTTTTCCTGTTCAGGACAATTGAAGCTAGCTGTTGACATCTACTACTCTAGGTTGGCTGGTGGGTTCAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

7.24

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57450
malus_domestica	MD02G1307300.v1.1
prunus_persica	Prupe.2G019800_v2.0.a1 Prupe.7G061500_v2.0.a1 Prupe.8G033700_v2.0.a1
pyrus_communis	pycom02g25850 pycom07g01410 pycom12g06330 pycom14g06130
rosa_chinensis	RchiOBHm_Chr1g0317121 RchiOBHm_Chr3g0482161 RchiOBHm_Chr3g0482181
rosa_laevigata	RLG00000030625
rosa_roxburghii	Rroxscaffold_4G00330640 Rroxscaffold_6G00399540 Rroxscaffold_6G00399670 Rroxscaffold_6G00400020
rosa_rugosa	Rorug01G0014900 Rorug03G0195500
rosa_wichuraiana	Rw1G001800 Rw3G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccII	CGCG	1 cut(s)	182
AciI	CCGC	3 cut(s)	48, 174, 194
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	268, 313
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	3 cut(s)	22, 271, 275
AluI	AGCT	3 cut(s)	22, 271, 275
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	2 cut(s)	201, 207
BciT130I	CCWGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	272, 294
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	3 cut(s)	48, 175, 223
BlsI	GCNGC	3 cut(s)	49, 176, 224
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	189
BmtI	GCTAGC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	48, 174, 194
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	172, 273
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	172, 273
CfoI	GCGC	1 cut(s)	106
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	7, 116
CviJI	RGCY	5 cut(s)	22, 47, 271, 275, 302
CviKI_1	RGCY	5 cut(s)	22, 47, 271, 275, 302
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	2 cut(s)	10, 119
FaiI	YATR	2 cut(s)	8, 117
FatI	CATG	2 cut(s)	6, 115
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	48, 175, 223
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	48, 175, 223
FspBI	CTAG	2 cut(s)	272, 294
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	48, 175, 223
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	10, 119
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	146, 258
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	3 cut(s)	182, 187, 193
HpyCH4V	TGCA	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	10, 119
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	272, 294
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MfeI	CAATTG	2 cut(s)	64, 263
MluCI	AATT	2 cut(s)	64, 263
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	108, 167
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	2 cut(s)	64, 263
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	182
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	1 cut(s)	28
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	10, 119
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	204
PctI	GAATGC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	49, 176, 224
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	48, 175, 223
Sau3AI	GATC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	5 cut(s)	24, 56, 273, 277, 299
SfaNI	GCATC	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	64, 263
SsiI	CCGC	3 cut(s)	48, 174, 194
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	2 cut(s)	272, 294
StyD4I	CCNGG	1 cut(s)	50
TasI	AATT	2 cut(s)	64, 263
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	2 cut(s)	50, 177
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	23
XspI	CTAG	2 cut(s)	272, 294
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.