Rroxscaffold_6G00399540

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010027
Physical Location & Seq
Reverse (-)
21484684 .. 21485564
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399540.1

Sequence Viewer

Length: 237 bp
ATGGCGAAGTGGGTGGAATTATTGGACACAGGGGTCAGAATAGCAGCCAGGTTTCATTCTCATTGCCCACAAACCGGACGTTTGTACTACCACCCTCCCTCTTCCAACTCCTCCTCTCAAGACGATCATCACCACCACGCGCCGCTTTTCGACGCCATGATGAGCGGTTGCGCTGTCAAGGCAGCTAGGGAGGCCAGCAGCATCAATAACAATGAGTTCATATATGCTGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.69

Weight (kDa)

6.63

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 165
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 143, 165
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 74
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 44, 182, 198
AspLEI GCGC 2 cut(s) 142, 173
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 3 cut(s) 56, 194, 210
BciT130I CCWGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 186
BisI GCNGC 4 cut(s) 45, 143, 183, 199
BlsI GCNGC 4 cut(s) 46, 144, 184, 200
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 3 cut(s) 56, 194, 210
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 143, 165
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 196
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 2 cut(s) 142, 173
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 179, 191
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 56, 194, 210
BsuRI GGCC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 2 cut(s) 142, 173
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 47, 185, 194
CviKI_1 RGCY 3 cut(s) 47, 185, 194
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 158, 221, 223, 225
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 45, 143, 183, 199
Fsp4HI GCNGC 4 cut(s) 45, 143, 183, 199
FspBI CTAG 1 cut(s) 186
GlaI GCGC 2 cut(s) 141, 172
GluI GCNGC 4 cut(s) 45, 143, 183, 199
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 142, 173
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 140, 171
HinP1I GCGC 2 cut(s) 140, 171
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 191
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 140, 171
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 15, 34, 61, 88, 208
Lsp1109I GCAGC 3 cut(s) 56, 194, 210
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 165
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 93
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 5 cut(s) 105, 109, 121, 124, 184
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 179, 191
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 160
PkrI GCNGC 4 cut(s) 46, 144, 184, 200
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 4 cut(s) 45, 143, 183, 199
Sau3AI GATC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 49
SetI ASST 3 cut(s) 53, 82, 187
SfaNI GCATC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 143, 165
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 145
TseI GCWGC 3 cut(s) 44, 182, 198
TspDTI ATGAA 2 cut(s) 44, 208
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.