Ceramide
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51290 AT5G51290 |
| fragaria_vesca | FvH4_7g27040 FvH4_7g27040 |
| malus_domestica | MD01G1178000.v1.1 MD07G1250200.v1.1 |
| prunus_persica | Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 |
| pyrus_communis | pycom01g18880 |
| rosa_chinensis | RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861 |
| rosa_laevigata | RLG00000026800 RLG00000029293 |
| rosa_multiflora | Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00283960 Rroxscaffold_4G00314670 |
| rosa_rugosa | Rorug01G0132600.1 Rorug01G0379600 |
| rosa_samantha | Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500 |
| rosa_wichuraiana | Rw1G034590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 512 |
| AciI | CCGC | 3 cut(s) | 51, 331, 1186 |
| AclWI | GGATC | 4 cut(s) | 283, 420, 800, 1004 |
| AcoI | YGGCCR | 1 cut(s) | 64 |
| AcsI | RAATTY | 5 cut(s) | 224, 702, 1315, 1640, 1705 |
| AfaI | GTAC | 1 cut(s) | 874 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 97, 109, 512, 1192, 1310 |
| AflIII | ACRYGT | 2 cut(s) | 422, 779 |
| AgsI | TTSAA | 9 cut(s) | 130, 288, 697, 770, 1109, 1237, 1639, 1649, 1727 |
| AjnI | CCWGG | 4 cut(s) | 66, 384, 1420, 1439 |
| AluBI | AGCT | 7 cut(s) | 84, 649, 737, 888, 1606, 1720, 1770 |
| AluI | AGCT | 7 cut(s) | 84, 649, 737, 888, 1606, 1720, 1770 |
| Alw21I | GWGCWC | 3 cut(s) | 995, 1504, 1722 |
| Alw26I | GTCTC | 2 cut(s) | 469, 861 |
| Alw44I | GTGCAC | 1 cut(s) | 991 |
| AlwI | GGATC | 4 cut(s) | 283, 420, 800, 1004 |
| Ama87I | CYCGRG | 2 cut(s) | 564, 1005 |
| AoxI | GGCC | 5 cut(s) | 64, 69, 459, 1195, 1759 |
| ApaI | GGGCCC | 1 cut(s) | 1199 |
| ApaLI | GTGCAC | 1 cut(s) | 991 |
| ApeKI | GCWGC | 5 cut(s) | 84, 528, 850, 1127, 1472 |
| ApoI | RAATTY | 5 cut(s) | 224, 702, 1315, 1640, 1705 |
| AseI | ATTAAT | 2 cut(s) | 447, 1559 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 832 |
| AspLEI | GCGC | 1 cut(s) | 1122 |
| AspS9I | GGNCC | 8 cut(s) | 100, 382, 460, 1195, 1196, 1437, 1443, 1784 |
| AsuC2I | CCSGG | 3 cut(s) | 565, 566, 1141 |
| AsuHPI | GGTGA | 3 cut(s) | 598, 695, 1727 |
| AvaI | CYCGRG | 2 cut(s) | 564, 1005 |
| AvaII | GGWCC | 5 cut(s) | 100, 382, 1437, 1443, 1784 |
| BaeGI | GKGCMC | 2 cut(s) | 995, 1199 |
| BalI | TGGCCA | 1 cut(s) | 66 |
| BanII | GRGCYC | 3 cut(s) | 1199, 1349, 1722 |
| Bbv12I | GWGCWC | 3 cut(s) | 995, 1504, 1722 |
| BbvI | GCAGC | 5 cut(s) | 71, 515, 862, 1139, 1459 |
| BccI | CCATC | 6 cut(s) | 56, 131, 619, 680, 1186, 1532 |
| BceAI | ACGGC | 2 cut(s) | 659, 1359 |
| BciT130I | CCWGG | 4 cut(s) | 68, 386, 1422, 1441 |
| BcnI | CCSGG | 3 cut(s) | 565, 566, 1141 |
| BcoDI | GTCTC | 2 cut(s) | 469, 861 |
| BfaI | CTAG | 2 cut(s) | 294, 464 |
| BfmI | CTRYAG | 2 cut(s) | 633, 1473 |
| BisI | GCNGC | 5 cut(s) | 85, 529, 851, 1128, 1473 |
| BlsI | GCNGC | 5 cut(s) | 86, 530, 852, 1129, 1474 |
| Bme1390I | CCNGG | 7 cut(s) | 68, 386, 565, 566, 1141, 1422, 1441 |
| Bme18I | GGWCC | 5 cut(s) | 100, 382, 1437, 1443, 1784 |
| BmeT110I | CYCGRG | 2 cut(s) | 564, 1005 |
| BmgT120I | GGNCC | 8 cut(s) | 100, 382, 460, 1195, 1196, 1437, 1443, 1784 |
| BmiI | GGNNCC | 3 cut(s) | 383, 1197, 1346 |
| BmrFI | CCNGG | 7 cut(s) | 68, 386, 565, 566, 1141, 1422, 1441 |
| BmrI | ACTGGG | 1 cut(s) | 1008 |
| BmsI | GCATC | 9 cut(s) | 204, 638, 648, 967, 1513, 1536, 1558, 1603, 1787 |
| BmuI | ACTGGG | 1 cut(s) | 1008 |
| BpuMI | CCSGG | 3 cut(s) | 565, 566, 1141 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1527 |
| BsaI | GGTCTC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 5 cut(s) | 96, 506, 564, 1039, 1446 |
| BsaWI | WCCGGW | 1 cut(s) | 1781 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 97, 109, 512, 1192, 1310 |
| Bse1I | ACTGG | 2 cut(s) | 171, 1003 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1527 |
| BseBI | CCWGG | 4 cut(s) | 68, 386, 1422, 1441 |
| BseDI | CCNNGG | 5 cut(s) | 96, 506, 564, 1039, 1446 |
| BseGI | GGATG | 4 cut(s) | 502, 1197, 1417, 1778 |
| BseJI | GATNNNNATC | 1 cut(s) | 1527 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 97, 109, 512, 1192, 1310 |
| BseMII | CTCAG | 4 cut(s) | 147, 851, 909, 1161 |
| BseNI | ACTGG | 2 cut(s) | 171, 1003 |
| BseRI | GAGGAG | 2 cut(s) | 849, 854 |
| BseSI | GKGCMC | 2 cut(s) | 995, 1199 |
| BseXI | GCAGC | 5 cut(s) | 71, 515, 862, 1139, 1459 |
| BseYI | CCCAGC | 1 cut(s) | 1602 |
| BsgI | GTGCAG | 1 cut(s) | 70 |
| BshFI | GGCC | 5 cut(s) | 66, 71, 461, 1197, 1761 |
| BsiHKAI | GWGCWC | 3 cut(s) | 995, 1504, 1722 |
| BsiHKCI | CYCGRG | 2 cut(s) | 564, 1005 |
| BsiSI | CCGG | 3 cut(s) | 565, 1140, 1782 |
| BslFI | GGGAC | 2 cut(s) | 881, 1015 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 97, 109, 512, 1192, 1310 |
| BsmAI | GTCTC | 2 cut(s) | 469, 861 |
| BsmFI | GGGAC | 2 cut(s) | 881, 1015 |
| BsnI | GGCC | 5 cut(s) | 66, 71, 461, 1197, 1761 |
| Bso31I | GGTCTC | 1 cut(s) | 469 |
| BsoBI | CYCGRG | 2 cut(s) | 564, 1005 |
| Bsp120I | GGGCCC | 1 cut(s) | 1195 |
| Bsp1286I | GDGCHC | 5 cut(s) | 995, 1199, 1349, 1504, 1722 |
| Bsp143I | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| BspACI | CCGC | 3 cut(s) | 51, 331, 1186 |
| BspANI | GGCC | 5 cut(s) | 66, 71, 461, 1197, 1761 |
| BspCNI | CTCAG | 4 cut(s) | 146, 850, 910, 1162 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 3 cut(s) | 383, 1197, 1346 |
| BspMAI | CTGCAG | 1 cut(s) | 1477 |
| BspPI | GGATC | 4 cut(s) | 283, 420, 800, 1004 |
| BspTNI | GGTCTC | 1 cut(s) | 469 |
| BsrI | ACTGG | 2 cut(s) | 171, 1003 |
| BssECI | CCNNGG | 5 cut(s) | 96, 506, 564, 1039, 1446 |
| BssMI | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| BssT1I | CCWWGG | 4 cut(s) | 96, 506, 1039, 1446 |
| Bst2UI | CCWGG | 4 cut(s) | 68, 386, 1422, 1441 |
| Bst4CI | ACNGT | 4 cut(s) | 57, 340, 1511, 1715 |
| Bst6I | CTCTTC | 1 cut(s) | 381 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1481 |
| BstC8I | GCNNGC | 3 cut(s) | 967, 1331, 1608 |
| BstDEI | CTNAG | 5 cut(s) | 133, 837, 918, 1170, 1460 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1308 |
| BstF5I | GGATG | 4 cut(s) | 502, 1197, 1417, 1778 |
| BstHHI | GCGC | 1 cut(s) | 1122 |
| BstKTI | GATC | 6 cut(s) | 222, 255, 278, 415, 808, 1012 |
| BstMAI | GTCTC | 2 cut(s) | 469, 861 |
| BstMBI | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 34, 458, 611, 1136, 1194, 1262, 1481, 1695, 1767 |
| BstNI | CCWGG | 4 cut(s) | 68, 386, 1422, 1441 |
| BstNSI | RCATGY | 2 cut(s) | 426, 783 |
| BstSCI | CCNGG | 7 cut(s) | 66, 384, 563, 564, 1139, 1420, 1439 |
| BstSFI | CTRYAG | 2 cut(s) | 633, 1473 |
| BstSLI | GKGCMC | 2 cut(s) | 995, 1199 |
| BstV1I | GCAGC | 5 cut(s) | 71, 515, 862, 1139, 1459 |
| BstX2I | RGATCY | 2 cut(s) | 412, 1009 |
| BstYI | RGATCY | 2 cut(s) | 412, 1009 |
| BsuRI | GGCC | 5 cut(s) | 66, 71, 461, 1197, 1761 |
| BtsCI | GGATG | 4 cut(s) | 502, 1197, 1417, 1778 |
| BtsI | GCAGTG | 1 cut(s) | 1662 |
| BtsIMutI | CAGTG | 3 cut(s) | 164, 345, 1662 |
| Cac8I | GCNNGC | 3 cut(s) | 967, 1331, 1608 |
| CciI | TCATGA | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 1122 |
| Cfr13I | GGNCC | 8 cut(s) | 100, 382, 460, 1195, 1196, 1437, 1443, 1784 |
| Cfr9I | CCCGGG | 1 cut(s) | 564 |
| CseI | GACGC | 1 cut(s) | 1119 |
| Csp6I | GTAC | 1 cut(s) | 873 |
| CviAII | CATG | 6 cut(s) | 176, 272, 344, 423, 780, 1577 |
| CviQI | GTAC | 1 cut(s) | 873 |
| DdeI | CTNAG | 5 cut(s) | 133, 837, 918, 1170, 1460 |
| DpnI | GATC | 6 cut(s) | 221, 254, 277, 414, 807, 1011 |
| DpnII | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| EaeI | YGGCCR | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 1 cut(s) | 381 |
| EarI | CTCTTC | 1 cut(s) | 381 |
| Ecl136II | GAGCTC | 1 cut(s) | 1720 |
| Eco130I | CCWWGG | 4 cut(s) | 96, 506, 1039, 1446 |
| Eco147I | AGGCCT | 2 cut(s) | 71, 1761 |
| Eco24I | GRGCYC | 3 cut(s) | 1199, 1349, 1722 |
| Eco31I | GGTCTC | 1 cut(s) | 469 |
| Eco47I | GGWCC | 5 cut(s) | 100, 382, 1437, 1443, 1784 |
| Eco53kI | GAGCTC | 1 cut(s) | 1720 |
| Eco88I | CYCGRG | 2 cut(s) | 564, 1005 |
| EcoICRI | GAGCTC | 1 cut(s) | 1720 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1308 |
| EcoO109I | RGGNCCY | 2 cut(s) | 382, 1196 |
| EcoRII | CCWGG | 4 cut(s) | 66, 384, 1420, 1439 |
| EcoT14I | CCWWGG | 4 cut(s) | 96, 506, 1039, 1446 |
| EcoT22I | ATGCAT | 1 cut(s) | 1551 |
| EcoT38I | GRGCYC | 3 cut(s) | 1199, 1349, 1722 |
| ErhI | CCWWGG | 4 cut(s) | 96, 506, 1039, 1446 |
| FaeI | CATG | 6 cut(s) | 179, 275, 347, 426, 783, 1580 |
| FaqI | GGGAC | 2 cut(s) | 881, 1015 |
| FatI | CATG | 6 cut(s) | 175, 271, 343, 422, 779, 1576 |
| FauI | CCCGC | 1 cut(s) | 58 |
| FauNDI | CATATG | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 5 cut(s) | 85, 529, 851, 1128, 1473 |
| FokI | GGATG | 4 cut(s) | 489, 1204, 1404, 1765 |
| FriOI | GRGCYC | 3 cut(s) | 1199, 1349, 1722 |
| Fsp4HI | GCNGC | 5 cut(s) | 85, 529, 851, 1128, 1473 |
| FspBI | CTAG | 2 cut(s) | 294, 464 |
| GlaI | GCGC | 1 cut(s) | 1121 |
| GluI | GCNGC | 5 cut(s) | 85, 529, 851, 1128, 1473 |
| GsaI | CCCAGC | 1 cut(s) | 1606 |
| HaeIII | GGCC | 5 cut(s) | 66, 71, 461, 1197, 1761 |
| HapII | CCGG | 3 cut(s) | 565, 1140, 1782 |
| HgaI | GACGC | 1 cut(s) | 1119 |
| HhaI | GCGC | 1 cut(s) | 1122 |
| Hin1II | CATG | 6 cut(s) | 179, 275, 347, 426, 783, 1580 |
| Hin6I | GCGC | 1 cut(s) | 1120 |
| HinP1I | GCGC | 1 cut(s) | 1120 |
| HincII | GTYRAC | 1 cut(s) | 1381 |
| HindII | GTYRAC | 1 cut(s) | 1381 |
| HinfI | GANTC | 9 cut(s) | 179, 268, 317, 364, 484, 542, 894, 914, 1003 |
| HpaI | GTTAAC | 1 cut(s) | 1381 |
| HpaII | CCGG | 3 cut(s) | 565, 1140, 1782 |
| HphI | GGTGA | 3 cut(s) | 598, 695, 1727 |
| Hpy166II | GTNNAC | 3 cut(s) | 993, 1381, 1671 |
| Hpy188I | TCNGA | 9 cut(s) | 136, 232, 322, 429, 840, 919, 1285, 1360, 1537 |
| Hpy188III | TCNNGA | 8 cut(s) | 176, 314, 352, 803, 911, 1007, 1304, 1787 |
| Hpy8I | GTNNAC | 3 cut(s) | 993, 1381, 1671 |
| HpyAV | CCTTC | 5 cut(s) | 136, 381, 511, 765, 1096 |
| HpyCH4III | ACNGT | 4 cut(s) | 57, 340, 1511, 1715 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 34, 458, 611, 1136, 1194, 1262, 1481, 1695, 1767 |
| HpyF3I | CTNAG | 5 cut(s) | 133, 837, 918, 1170, 1460 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92II | CATG | 6 cut(s) | 179, 275, 347, 426, 783, 1580 |
| HspAI | GCGC | 1 cut(s) | 1120 |
| KspAI | GTTAAC | 1 cut(s) | 1381 |
| Kzo9I | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| LmnI | GCTCC | 3 cut(s) | 646, 742, 1344 |
| Lsp1109I | GCAGC | 5 cut(s) | 71, 515, 862, 1139, 1459 |
| LweI | GCATC | 9 cut(s) | 204, 638, 648, 967, 1513, 1536, 1558, 1603, 1787 |
| MaeI | CTAG | 2 cut(s) | 294, 464 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 4 cut(s) | 121, 311, 592, 1394 |
| MalI | GATC | 6 cut(s) | 221, 254, 277, 414, 807, 1011 |
| MboI | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| MboII | GAAGA | 6 cut(s) | 368, 479, 758, 825, 1298, 1674 |
| MflI | RGATCY | 2 cut(s) | 412, 1009 |
| MhlI | GDGCHC | 5 cut(s) | 995, 1199, 1349, 1504, 1722 |
| MlsI | TGGCCA | 1 cut(s) | 66 |
| MluNI | TGGCCA | 1 cut(s) | 66 |
| MlyI | GAGTC | 5 cut(s) | 173, 311, 358, 903, 997 |
| MnlI | CCTC | 8 cut(s) | 82, 348, 870, 875, 938, 1304, 1613, 1751 |
| Mox20I | TGGCCA | 1 cut(s) | 66 |
| Mph1103I | ATGCAT | 1 cut(s) | 1551 |
| MroXI | GAANNNNTTC | 1 cut(s) | 832 |
| MscI | TGGCCA | 1 cut(s) | 66 |
| MseI | TTAA | 5 cut(s) | 438, 447, 708, 1380, 1559 |
| MslI | CAYNNNNRTG | 1 cut(s) | 986 |
| Msp20I | TGGCCA | 1 cut(s) | 66 |
| MspA1I | CMGCKG | 1 cut(s) | 1188 |
| MspI | CCGG | 3 cut(s) | 565, 1140, 1782 |
| MspR9I | CCNGG | 7 cut(s) | 68, 386, 565, 566, 1141, 1422, 1441 |
| MvaI | CCWGG | 4 cut(s) | 68, 386, 1422, 1441 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 34, 458, 611, 1136, 1194, 1262, 1481, 1695, 1767 |
| NciI | CCSGG | 3 cut(s) | 565, 566, 1141 |
| NdeI | CATATG | 1 cut(s) | 658 |
| NdeII | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| NlaIII | CATG | 6 cut(s) | 179, 275, 347, 426, 783, 1580 |
| NlaIV | GGNNCC | 3 cut(s) | 383, 1197, 1346 |
| NmuCI | GTSAC | 2 cut(s) | 311, 592 |
| NsiI | ATGCAT | 1 cut(s) | 1551 |
| NspI | RCATGY | 2 cut(s) | 426, 783 |
| PaeR7I | CTCGAG | 1 cut(s) | 1005 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PceI | AGGCCT | 2 cut(s) | 71, 1761 |
| PciI | ACATGT | 2 cut(s) | 422, 779 |
| PdmI | GAANNNNTTC | 1 cut(s) | 832 |
| PfeI | GAWTC | 4 cut(s) | 268, 484, 542, 914 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 512 |
| PfoI | TCCNGGA | 1 cut(s) | 1420 |
| PkrI | GCNGC | 5 cut(s) | 86, 530, 852, 1129, 1474 |
| PleI | GAGTC | 5 cut(s) | 173, 311, 358, 902, 997 |
| PpsI | GAGTC | 5 cut(s) | 173, 311, 358, 902, 997 |
| PpuMI | RGGWCCY | 1 cut(s) | 382 |
| PscI | ACATGT | 2 cut(s) | 422, 779 |
| PshBI | ATTAAT | 2 cut(s) | 447, 1559 |
| Psp124BI | GAGCTC | 1 cut(s) | 1722 |
| Psp5II | RGGWCCY | 1 cut(s) | 382 |
| Psp6I | CCWGG | 4 cut(s) | 66, 384, 1420, 1439 |
| PspFI | CCCAGC | 1 cut(s) | 1602 |
| PspGI | CCWGG | 4 cut(s) | 66, 384, 1420, 1439 |
| PspN4I | GGNNCC | 3 cut(s) | 383, 1197, 1346 |
| PspOMI | GGGCCC | 1 cut(s) | 1195 |
| PspPI | GGNCC | 8 cut(s) | 100, 382, 460, 1195, 1196, 1437, 1443, 1784 |
| PspPPI | RGGWCCY | 1 cut(s) | 382 |
| PstI | CTGCAG | 1 cut(s) | 1477 |
| PsuI | RGATCY | 2 cut(s) | 412, 1009 |
| RsaI | GTAC | 1 cut(s) | 874 |
| RsaNI | GTAC | 1 cut(s) | 873 |
| RseI | CAYNNNNRTG | 1 cut(s) | 986 |
| SacI | GAGCTC | 1 cut(s) | 1722 |
| SaqAI | TTAA | 5 cut(s) | 438, 447, 708, 1380, 1559 |
| SatI | GCNGC | 5 cut(s) | 85, 529, 851, 1128, 1473 |
| Sau3AI | GATC | 6 cut(s) | 219, 252, 275, 412, 805, 1009 |
| Sau96I | GGNCC | 8 cut(s) | 100, 382, 460, 1195, 1196, 1437, 1443, 1784 |
| SchI | GAGTC | 5 cut(s) | 173, 311, 358, 903, 997 |
| ScrFI | CCNGG | 7 cut(s) | 68, 386, 565, 566, 1141, 1422, 1441 |
| SduI | GDGCHC | 5 cut(s) | 995, 1199, 1349, 1504, 1722 |
| SfaNI | GCATC | 9 cut(s) | 204, 638, 648, 967, 1513, 1536, 1558, 1603, 1787 |
| SfcI | CTRYAG | 2 cut(s) | 633, 1473 |
| Sfr274I | CTCGAG | 1 cut(s) | 1005 |
| SinI | GGWCC | 5 cut(s) | 100, 382, 1437, 1443, 1784 |
| SlaI | CTCGAG | 1 cut(s) | 1005 |
| SmaI | CCCGGG | 1 cut(s) | 566 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 986 |
| SmlI | CTYRAG | 1 cut(s) | 1005 |
| SmoI | CTYRAG | 1 cut(s) | 1005 |
| SseBI | AGGCCT | 2 cut(s) | 71, 1761 |
| SsiI | CCGC | 3 cut(s) | 51, 331, 1186 |
| SspMI | CTAG | 2 cut(s) | 294, 464 |
| SstI | GAGCTC | 1 cut(s) | 1722 |
| StuI | AGGCCT | 2 cut(s) | 71, 1761 |
| StyD4I | CCNGG | 7 cut(s) | 66, 384, 563, 564, 1139, 1420, 1439 |
| StyI | CCWWGG | 4 cut(s) | 96, 506, 1039, 1446 |
| TaaI | ACNGT | 4 cut(s) | 57, 340, 1511, 1715 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 5 cut(s) | 60, 255, 1006, 1100, 1756 |
| TaqII | GACCGA | 1 cut(s) | 392 |
| TatI | WGTACW | 1 cut(s) | 872 |
| TfiI | GAWTC | 4 cut(s) | 268, 484, 542, 914 |
| Tru1I | TTAA | 5 cut(s) | 438, 447, 708, 1380, 1559 |
| Tru9I | TTAA | 5 cut(s) | 438, 447, 708, 1380, 1559 |
| TscAI | CASTG | 3 cut(s) | 171, 345, 1669 |
| TseFI | GTSAC | 2 cut(s) | 311, 592 |
| TseI | GCWGC | 5 cut(s) | 84, 528, 850, 1127, 1472 |
| Tsp45I | GTSAC | 2 cut(s) | 311, 592 |
| TspDTI | ATGAA | 4 cut(s) | 260, 491, 645, 714 |
| TspGWI | ACGGA | 1 cut(s) | 678 |
| TspMI | CCCGGG | 1 cut(s) | 564 |
| TspRI | CASTG | 3 cut(s) | 171, 345, 1669 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 512 |
| VneI | GTGCAC | 1 cut(s) | 991 |
| VpaK11BI | GGWCC | 5 cut(s) | 100, 382, 1437, 1443, 1784 |
| VspI | ATTAAT | 2 cut(s) | 447, 1559 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1308 |
| XapI | RAATTY | 5 cut(s) | 224, 702, 1315, 1640, 1705 |
| XceI | RCATGY | 2 cut(s) | 426, 783 |
| XhoI | CTCGAG | 1 cut(s) | 1005 |
| XmaI | CCCGGG | 1 cut(s) | 564 |
| XmnI | GAANNNNTTC | 1 cut(s) | 832 |
| XspI | CTAG | 2 cut(s) | 294, 464 |
| Zsp2I | ATGCAT | 1 cut(s) | 1551 |