Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Forward (+)

21725847 .. 21729982

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAAGGGAAGTCAATAGCAGGCACAACAATTGCCTTCAAGGATGACTCAACTTGTTTATGCATCAAATTTGCTTCAAAGGTTGCACCAACCGAGATCGAGTTTTCGGATGTGTATGCTGTTGTGCTGATCAACTATGGTGTGATTCATGGACCAAATATCTCGAATGCTCGAAGATGCCTTAAGGCCTTAAGGGTCAACGTTTACCGCTTTACGGTGCATAGTTTCCAGAGCTCAAGGACTTTACCATCTGTTCAGGTCCTTGCTACATATACCTTTGGTCATAAGGATCTCCACATATGTCAGATATGGGTCAATCAAATCAATGCTTCTCTGGACTTAGAGCAGGGGACGCCAAAGAATCTTTTGGTTTTTGTTCATCCAAGGAGTGGGAAGGGAAATGCTTGCAAAACTTGGGACAGTGTGGCTCGTATTTTCTCCCGTGCTAAAGTGAAAACAAAGGGTGGTGATGGTTTTCTCAACAATATTCTTAATGGATTTCTTTCTTCAAGGTATAAAGTTCCATATCCACCAACTCCTTCAGATTTCCTTGATTCTGCTTGTTGCAATGAGAATCTCATTGTAAATGATCCAAGTGAAACCATTATTGAAGCTTCTTCTCAGAATAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

211

Amino Acids

23.28

Weight (kDa)

8.96

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	208
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	297, 584
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	214, 389
AflII	CTTAAG	2 cut(s)	182, 190
AgsI	TTSAA	4 cut(s)	40, 78, 510, 611
AluBI	AGCT	2 cut(s)	234, 614
AluI	AGCT	2 cut(s)	234, 614
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	297, 584
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	152, 259
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	152, 259
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	2 cut(s)	256, 464
BclI	TGATCA	1 cut(s)	129
BfrI	CTTAAG	2 cut(s)	182, 190
Bme18I	GGWCC	2 cut(s)	152, 259
BmgT120I	GGNCC	2 cut(s)	152, 259
BmsI	GCATC	2 cut(s)	72, 167
BpuEI	CTTGAG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 389
Bse3DI	GCAATG	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	49, 115, 379
BseLI	CCNNNNNNNGG	2 cut(s)	214, 389
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	635
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	364, 431
BslI	CCNNNNNNNGG	2 cut(s)	214, 389
BsmFI	GGGAC	2 cut(s)	364, 431
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	96, 129, 289, 589
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	297, 584
BspTI	CTTAAG	2 cut(s)	182, 190
BsrDI	GCAATG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	4 cut(s)	96, 129, 289, 589
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	217, 422
BstACI	GRCGYC	1 cut(s)	353
BstAFI	CTTAAG	2 cut(s)	182, 190
BstC8I	GCNNGC	2 cut(s)	22, 406
BstDEI	CTNAG	2 cut(s)	340, 621
BstF5I	GGATG	3 cut(s)	49, 115, 379
BstKTI	GATC	4 cut(s)	99, 132, 292, 592
BstMBI	GATC	4 cut(s)	96, 129, 289, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	49, 115, 379
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	22, 406
Cfr13I	GGNCC	2 cut(s)	152, 259
CseI	GACGC	1 cut(s)	361
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	4 cut(s)	188, 234, 428, 614
CviKI_1	RGCY	4 cut(s)	188, 234, 428, 614
DdeI	CTNAG	2 cut(s)	340, 621
DpnI	GATC	4 cut(s)	98, 131, 291, 591
DpnII	GATC	4 cut(s)	96, 129, 289, 589
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	152, 259
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	1 cut(s)	152
FaqI	GGGAC	2 cut(s)	364, 431
FatI	CATG	1 cut(s)	148
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	3 cut(s)	56, 122, 366
FriOI	GRGCYC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	5 cut(s)	47, 145, 361, 554, 574
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	199, 205
Hpy188I	TCNGA	4 cut(s)	109, 306, 544, 624
Hpy188III	TCNNGA	3 cut(s)	163, 229, 335
Hpy8I	GTNNAC	2 cut(s)	199, 205
HpyAV	CCTTC	3 cut(s)	46, 388, 549
HpyCH4III	ACNGT	2 cut(s)	217, 422
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	63, 86, 220, 408, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	340, 621
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	96, 129, 289, 589
LpnPI	CCDG	5 cut(s)	6, 242, 242, 320, 332
LweI	GCATC	2 cut(s)	72, 167
MaeII	ACGT	1 cut(s)	201
MalI	GATC	4 cut(s)	98, 131, 291, 591
MboI	GATC	4 cut(s)	96, 129, 289, 589
MboII	GAAGA	3 cut(s)	186, 498, 609
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	2 cut(s)	30, 68
MlyI	GAGTC	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	3 cut(s)	183, 191, 492
MspCI	CTTAAG	2 cut(s)	182, 190
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	4 cut(s)	96, 129, 289, 589
NlaIII	CATG	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	145, 361, 554, 574
PflMI	CCANNNNNTGG	1 cut(s)	389
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	152, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	183, 191, 492
Sau3AI	GATC	4 cut(s)	96, 129, 289, 589
Sau96I	GGNCC	2 cut(s)	152, 259
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	7 cut(s)	84, 204, 236, 261, 278, 515, 616
SfaNI	GCATC	2 cut(s)	72, 167
SinI	GGWCC	2 cut(s)	152, 259
SmlI	CTYRAG	3 cut(s)	182, 190, 235
SmoI	CTYRAG	3 cut(s)	182, 190, 235
Sse9I	AATT	2 cut(s)	30, 68
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	487
SstI	GAGCTC	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	217, 422
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	99, 164, 172
TasI	AATT	2 cut(s)	30, 68
TfiI	GAWTC	4 cut(s)	145, 361, 554, 574
Tru1I	TTAA	3 cut(s)	183, 191, 492
Tru9I	TTAA	3 cut(s)	183, 191, 492
TscAI	CASTG	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	17, 137, 368
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	389
Vha464I	CTTAAG	2 cut(s)	182, 190
VpaK11BI	GGWCC	2 cut(s)	152, 259
XapI	RAATTY	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.