Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Forward (+)

36159873 .. 36165090

Gene Structure 5218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGTCAAGAGTTTAGAAAGGATCCTGCACTACGAGGCGGGAATGATTGGCGAGAAGGGGTTGATCGTAGGGTCAATCAATTCGTGCCGCGTAAGCATATAGTGGACCCGCTAAAGCAAATCACAAGGCAAGATGATTCAACTTGTTTGTGCATCAAATTTGCTTCAAAGGTTGCACCAACCGAGATCAAGTTTTCCGATGTGTATGCTGTTGAGCTGATCAACTATGGTGCCTTAAGGGTCAACGTGACTATGAGGTTGAGGTTTGTTCGATTCCTTTCCTTGGTTCTGTGTGCTTTAAGTGCCTCATCCGGTAGTAATATCTTTGTGTCTACATTGATGCAGATTTACCGCTTTACGGTGTATGGTTTCCGGAGCTCAAGGACTTTGCCGTCTGTTCGGGTCCTTGCTACTACATATACATTTGGTCATAGGGATCTCCAGATATGTCAGACATGGGTCAATCAAATCAATGCTTCTCTGGACTTTGAGCAGGGGATGCCAAAGAATCTTTTGGGAAATGCCTGCAAAACTTGGGACAGTGTGGCTCCTATATTGTCCCGTACTAAAGTGAAAACAAAGGTGATTGTGACCAAAAGGGCAGTGCATGCATATGATGCGATGGCAACTATAGGAAACAAGCATAAAGCTCCATATCCACCAACTCCTTCAGATTTCCTTGATTCTGCTAGTTGTAATGAGAGTCTCATTGTAAATGATCCAAGTGAAACCGTTATTGAAGCTTCTTCTCAGAATAATGAGCAGTCTCCCCTCCTCTCAAGTTCAAATATTAATGGCTCAGGACTCAGGAGTCTCAAATATCAATGTTATATAAAAAGCGATTATCAGCTGTACAAGTGGCATTTGGTCCTCGAGCTCCATGAGGACATATGGGGTACCGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

303

Amino Acids

34.12

Weight (kDa)

9.18

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	391, 810
Acc65I	GGTACC	1 cut(s)	896
AccB1I	GGYRCC	2 cut(s)	230, 896
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	4 cut(s)	39, 89, 110, 352
AclWI	GGATC	4 cut(s)	17, 30, 444, 713
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	565, 854, 898
AfiI	CCNNNNNNNGG	2 cut(s)	283, 358
AflII	CTTAAG	1 cut(s)	235
AgeI	ACCGGT	1 cut(s)	899
AgsI	TTSAA	4 cut(s)	141, 168, 740, 786
AluBI	AGCT	6 cut(s)	217, 378, 650, 743, 850, 877
AluI	AGCT	6 cut(s)	217, 378, 650, 743, 850, 877
Alw21I	GWGCWC	2 cut(s)	380, 879
Alw26I	GTCTC	3 cut(s)	710, 771, 818
AlwI	GGATC	4 cut(s)	17, 30, 444, 713
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	792
AsiGI	ACCGGT	1 cut(s)	899
Asp718I	GGTACC	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	106, 403, 868
AsuHPI	GGTGA	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	3 cut(s)	106, 403, 868
BamHI	GGATCC	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	230, 896
BanII	GRGCYC	2 cut(s)	380, 879
Bbv12I	GWGCWC	2 cut(s)	380, 879
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	710, 771, 818
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	630
BfrI	CTTAAG	1 cut(s)	235
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme18I	GGWCC	3 cut(s)	106, 403, 868
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	3 cut(s)	106, 403, 868
BmiI	GGNNCC	6 cut(s)	24, 108, 232, 404, 549, 898
BmsI	GCATC	4 cut(s)	162, 330, 489, 607
BoxI	GACNNNNGTC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	364, 763
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	3 cut(s)	311, 372, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 358
Bse118I	RCCGGY	1 cut(s)	899
BseAI	TCCGGA	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	308, 504
BseLI	CCNNNNNNNGG	2 cut(s)	283, 358
BseMII	CTCAG	3 cut(s)	764, 813, 820
BseRI	GAGGAG	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	91
BshNI	GGYRCC	2 cut(s)	230, 896
BshTI	ACCGGT	1 cut(s)	899
BsiHKAI	GWGCWC	2 cut(s)	380, 879
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	3 cut(s)	312, 373, 900
BslFI	GGGAC	2 cut(s)	544, 551
BslI	CCNNNNNNNGG	2 cut(s)	283, 358
BsmAI	GTCTC	3 cut(s)	710, 771, 818
BsmFI	GGGAC	2 cut(s)	544, 551
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	2 cut(s)	380, 879
Bsp13I	TCCGGA	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
BspACI	CCGC	4 cut(s)	39, 89, 110, 352
BspCNI	CTCAG	3 cut(s)	763, 812, 819
BspEI	TCCGGA	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	6 cut(s)	24, 108, 232, 404, 549, 898
BspPI	GGATC	4 cut(s)	17, 30, 444, 713
BspT107I	GGYRCC	2 cut(s)	230, 896
BspTI	CTTAAG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	899
BsrGI	TGTACA	1 cut(s)	852
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	361, 542, 733
BstAFI	CTTAAG	1 cut(s)	235
BstAPI	GCANNNNNTGC	3 cut(s)	499, 608, 617
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	526, 609
BstDEI	CTNAG	3 cut(s)	750, 799, 806
BstF5I	GGATG	2 cut(s)	308, 504
BstFNI	CGCG	1 cut(s)	91
BstKTI	GATC	6 cut(s)	25, 67, 189, 222, 439, 721
BstMAI	GTCTC	3 cut(s)	710, 771, 818
BstMBI	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 302, 499, 608, 617
BstNSI	RCATGY	1 cut(s)	611
BstPAI	GACNNNNGTC	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	22, 436
BstYI	RGATCY	2 cut(s)	22, 436
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	2 cut(s)	308, 504
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	547, 609
Cac8I	GCNNGC	2 cut(s)	526, 609
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	106, 403, 868
Csp6I	GTAC	3 cut(s)	564, 853, 897
CspAI	ACCGGT	1 cut(s)	899
CviAII	CATG	3 cut(s)	456, 608, 881
CviJI	RGCY	8 cut(s)	217, 378, 548, 650, 743, 798, 850, 877
CviKI_1	RGCY	8 cut(s)	217, 378, 548, 650, 743, 798, 850, 877
CviQI	GTAC	3 cut(s)	564, 853, 897
DdeI	CTNAG	3 cut(s)	750, 799, 806
DpnI	GATC	6 cut(s)	24, 66, 188, 221, 438, 720
DpnII	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
DrdI	GACNNNNNNGTC	2 cut(s)	391, 810
DseDI	GACNNNNNNGTC	2 cut(s)	391, 810
Ecl136II	GAGCTC	2 cut(s)	378, 877
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	380, 879
Eco47I	GGWCC	3 cut(s)	106, 403, 868
Eco53kI	GAGCTC	2 cut(s)	378, 877
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	872
EcoICRI	GAGCTC	2 cut(s)	378, 877
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	380, 879
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	459, 611, 884
FaqI	GGGAC	2 cut(s)	544, 551
FatI	CATG	3 cut(s)	455, 607, 880
FauI	CCCGC	2 cut(s)	32, 117
FauNDI	CATATG	2 cut(s)	613, 890
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	295, 511
FriOI	GRGCYC	2 cut(s)	380, 879
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	690
GluI	GCNGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	425
HapII	CCGG	3 cut(s)	312, 373, 900
Hin1II	CATG	3 cut(s)	459, 611, 884
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	8 cut(s)	4, 137, 273, 508, 683, 703, 804, 811
HpaII	CCGG	3 cut(s)	312, 373, 900
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	3 cut(s)	106, 244, 333
Hpy188I	TCNGA	4 cut(s)	199, 453, 673, 753
Hpy188III	TCNNGA	6 cut(s)	8, 373, 442, 482, 801, 808
Hpy8I	GTNNAC	3 cut(s)	106, 244, 333
HpyAV	CCTTC	2 cut(s)	50, 678
HpyCH4III	ACNGT	3 cut(s)	361, 542, 733
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	29, 153, 176, 343, 528, 607, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 302, 499, 608, 617
HpyF3I	CTNAG	3 cut(s)	750, 799, 806
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	459, 611, 884
Kpn2I	TCCGGA	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	900
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
LmnI	GCTCC	4 cut(s)	375, 553, 655, 882
LpnPI	CCDG	9 cut(s)	39, 325, 386, 455, 467, 479, 538, 786, 793
LweI	GCATC	4 cut(s)	162, 330, 489, 607
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	247, 589, 902
MalI	GATC	6 cut(s)	24, 66, 188, 221, 438, 720
MboI	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
MboII	GAAGA	1 cut(s)	738
MflI	RGATCY	2 cut(s)	22, 436
MhlI	GDGCHC	2 cut(s)	380, 879
MluCI	AATT	2 cut(s)	80, 158
MlyI	GAGTC	4 cut(s)	13, 712, 798, 820
MnlI	CCTC	8 cut(s)	29, 249, 255, 316, 782, 785, 877, 881
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	372
MseI	TTAA	3 cut(s)	236, 299, 792
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	235
MspI	CCGG	3 cut(s)	312, 373, 900
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	5 cut(s)	94, 302, 499, 608, 617
NdeI	CATATG	2 cut(s)	613, 890
NdeII	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
NlaIII	CATG	3 cut(s)	459, 611, 884
NlaIV	GGNNCC	6 cut(s)	24, 108, 232, 404, 549, 898
NmuCI	GTSAC	2 cut(s)	247, 589
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PaeR7I	CTCGAG	1 cut(s)	872
PfeI	GAWTC	4 cut(s)	137, 273, 508, 683
PinAI	ACCGGT	1 cut(s)	899
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	4 cut(s)	12, 711, 798, 819
PpsI	GAGTC	4 cut(s)	12, 711, 798, 819
PpuMI	RGGWCCY	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	792
Psp124BI	GAGCTC	2 cut(s)	380, 879
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	6 cut(s)	24, 108, 232, 404, 549, 898
PspPI	GGNCC	3 cut(s)	106, 403, 868
PspPPI	RGGWCCY	1 cut(s)	403
PspXI	VCTCGAGB	1 cut(s)	872
PsuI	RGATCY	2 cut(s)	22, 436
PvuII	CAGCTG	1 cut(s)	850
RsaI	GTAC	3 cut(s)	565, 854, 898
RsaNI	GTAC	3 cut(s)	564, 853, 897
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	2 cut(s)	380, 879
SaqAI	TTAA	3 cut(s)	236, 299, 792
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	6 cut(s)	22, 64, 186, 219, 436, 718
Sau96I	GGNCC	3 cut(s)	106, 403, 868
SchI	GAGTC	4 cut(s)	13, 712, 798, 820
SduI	GDGCHC	2 cut(s)	380, 879
SfaNI	GCATC	4 cut(s)	162, 330, 489, 607
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	872
SinI	GGWCC	3 cut(s)	106, 403, 868
SlaI	CTCGAG	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	4 cut(s)	235, 379, 778, 872
SmoI	CTYRAG	4 cut(s)	235, 379, 778, 872
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	2 cut(s)	80, 158
SsiI	CCGC	4 cut(s)	39, 89, 110, 352
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	2 cut(s)	380, 879
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	361, 542, 733
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	271, 873
TasI	AATT	2 cut(s)	80, 158
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	4 cut(s)	137, 273, 508, 683
Tru1I	TTAA	3 cut(s)	236, 299, 792
Tru9I	TTAA	3 cut(s)	236, 299, 792
TscAI	CASTG	2 cut(s)	547, 609
TseFI	GTSAC	2 cut(s)	247, 589
Tsp45I	GTSAC	2 cut(s)	247, 589
TspRI	CASTG	2 cut(s)	547, 609
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	106, 403, 868
VspI	ATTAAT	1 cut(s)	792
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.