Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Forward (+)

19918652 .. 19929095

Gene Structure 10444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGTAACTGGGATTTGAATTTTGTGGTTTCAGTATTGGATTCGAACATTGGAGATGTGGATTTGGGATTGAAGGAAAAAATGTCAAAATTGGGGCTAGGAAGGCTCAAGAGAATGGTGGTCTCCGATAAGAGCCTTGAGTTGCTTTCCAGGTATGGCCAAGAAATTATGGCAGTGAAGGGGAGGGTTCTGCAAGTTCCACCAGTGTTCAGGCATCGTTTGTATGTACTACTGCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGATTTCTCGCAATCAAATCCAACCTATGGATTATACCCCAGCACCAACTATAAAGATGGATCATGATGTCACAATTGAGGATGACTCAACTTGTTTGTGCATCAAATTTGCTTCAAAGGTTGCACCAACCGAGATCGAGTTTTCGGATGTGTATGCTGTTGAGCTGATCAACTATGGTGTGATTCATGGACCAAATGTCTCGAATGCTCGAAGATGCCTTAAGGCCTTAAGGGTCAACATTTACCGCTTTACGGTGCATAGTTTCCAGAGCTCAAGGACCTTGCCGTCTGTTCGCGTCCTTGCTACATATACCTTTGGTCATAAGGATCTCCACATATGTCAGATATGGGTCAATCAAATCAATGCTTCTCTGGACTTAGAGCAGGGGACGCCAAAGAATCTTTTGGTTTTTGTTCATCCAAGGAGTGGGAAGGGAAATGCCTGCAAAACTTGGGACAGTGTGGCTCCTATTTTCTCCCGTGCTAAAGTGAAAACAAAGCTTATTTCATACGATGGAGTTATAGCTGTTGGTGGTGATGGTTTTCTCAACAATATTCTTAATGGATTTCTTTCTTCAAGGTATAAAGCTCCATATCCACCAACTCCTTCATATTTCCTTGATTCTGCTTGTTGTAATGAGAATCTCATTGTAAATGATCCAAGTGAAACCATTATTGAAGCTTCTTCTCAGAATAATGAGCAGTCTCCCCTCCTCTCAAGTTCAAGTATTAATGACTCAGGACTCGAGAGTCTCAAATATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

354

Amino Acids

39.4

Weight (kDa)

6.18

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdRP	PF05183	78 - 127	8.1e-15	RNA dependent RNA polymerase
DAGK_cat	PF00781	234 - 292	9.4e-06	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	583, 1047
AccB7I	CCANNNNNTGG	2 cut(s)	325, 725
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	3 cut(s)	366, 633, 950
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	19, 404
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	325, 550, 725
AflII	CTTAAG	2 cut(s)	518, 526
AgsI	TTSAA	6 cut(s)	19, 73, 414, 876, 977, 1023
AhdI	GACNNNNNGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	229, 261
AluBI	AGCT	6 cut(s)	463, 570, 799, 824, 887, 980
AluI	AGCT	6 cut(s)	463, 570, 799, 824, 887, 980
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	4 cut(s)	127, 502, 1008, 1055
AlwI	GGATC	3 cut(s)	366, 633, 950
Ama87I	CYCGRG	2 cut(s)	293, 1043
AoxI	GGCC	2 cut(s)	157, 522
ApoI	RAATTY	2 cut(s)	19, 404
AseI	ATTAAT	1 cut(s)	1029
AspS9I	GGNCC	3 cut(s)	289, 488, 576
AsuHPI	GGTGA	1 cut(s)	845
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	2 cut(s)	293, 1043
AvaII	GGWCC	3 cut(s)	289, 488, 576
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	572
BccI	CCATC	4 cut(s)	257, 349, 806, 830
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	4 cut(s)	127, 502, 1008, 1055
BfaI	CTAG	1 cut(s)	98
BfrI	CTTAAG	2 cut(s)	518, 526
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	289, 488, 576
BmeRI	GACNNNNNGTC	1 cut(s)	494
BmeT110I	CYCGRG	2 cut(s)	293, 1043
BmgT120I	GGNCC	3 cut(s)	289, 488, 576
BmiI	GGNNCC	3 cut(s)	290, 291, 765
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	223, 408, 503
BmuI	ACTGGG	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	4 cut(s)	92, 158, 556, 1000
BsaHI	GRCGYC	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 550, 725
Bse1I	ACTGG	2 cut(s)	14, 203
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	3 cut(s)	385, 451, 715
BseLI	CCNNNNNNNGG	3 cut(s)	325, 550, 725
BseMII	CTCAG	2 cut(s)	1001, 1050
BseNI	ACTGG	2 cut(s)	14, 203
BseRI	GAGGAG	1 cut(s)	1001
BseYI	CCCAGC	2 cut(s)	285, 337
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	159, 524
BsiHKAI	GWGCWC	1 cut(s)	572
BsiHKCI	CYCGRG	2 cut(s)	293, 1043
BslFI	GGGAC	3 cut(s)	302, 700, 767
BslI	CCNNNNNNNGG	3 cut(s)	325, 550, 725
BsmAI	GTCTC	4 cut(s)	127, 502, 1008, 1055
BsmFI	GGGAC	3 cut(s)	302, 700, 767
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	159, 524
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	2 cut(s)	293, 1043
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	2 cut(s)	159, 524
BspCNI	CTCAG	2 cut(s)	1000, 1049
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	290, 291, 765
BspPI	GGATC	3 cut(s)	366, 633, 950
BspT104I	TTCGAA	1 cut(s)	44
BspTI	CTTAAG	2 cut(s)	518, 526
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	14, 203
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	553, 758
BstACI	GRCGYC	1 cut(s)	689
BstAFI	CTTAAG	2 cut(s)	518, 526
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	3 cut(s)	676, 987, 1036
BstF5I	GGATG	3 cut(s)	385, 451, 715
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	6 cut(s)	259, 361, 435, 468, 628, 958
BstMAI	GTCTC	4 cut(s)	127, 502, 1008, 1055
BstMBI	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 688
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	159, 524
BtsCI	GGATG	3 cut(s)	385, 451, 715
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	180, 210, 763
Cac8I	GCNNGC	1 cut(s)	742
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	289, 488, 576
CseI	GACGC	2 cut(s)	583, 697
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	362, 485
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	676, 987, 1036
DpnI	GATC	6 cut(s)	258, 360, 434, 467, 627, 957
DpnII	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
DrdI	GACNNNNNNGTC	2 cut(s)	583, 1047
DriI	GACNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	2 cut(s)	583, 1047
EaeI	YGGCCR	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	719
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	289, 488, 576
Eco53kI	GAGCTC	1 cut(s)	570
Eco88I	CYCGRG	2 cut(s)	293, 1043
EcoICRI	GAGCTC	1 cut(s)	570
EcoO109I	RGGNCCY	2 cut(s)	289, 576
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	2 cut(s)	365, 488
FaqI	GGGAC	3 cut(s)	302, 700, 767
FatI	CATG	2 cut(s)	361, 484
FauNDI	CATATG	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	465
FokI	GGATG	3 cut(s)	392, 458, 702
FriOI	GRGCYC	1 cut(s)	572
FspBI	CTAG	1 cut(s)	98
GsaI	CCCAGC	2 cut(s)	289, 341
HaeIII	GGCC	2 cut(s)	159, 524
HgaI	GACGC	2 cut(s)	583, 697
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	2 cut(s)	365, 488
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	2 cut(s)	797, 978
HinfI	GANTC	9 cut(s)	41, 383, 481, 697, 920, 940, 1034, 1041, 1048
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	4 cut(s)	127, 445, 642, 990
Hpy188III	TCNNGA	9 cut(s)	109, 249, 260, 362, 499, 565, 671, 1038, 1045
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	5 cut(s)	67, 96, 172, 724, 915
HpyCH4III	ACNGT	2 cut(s)	553, 758
HpyCH4V	TGCA	5 cut(s)	193, 399, 422, 556, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 688
HpyF3I	CTNAG	3 cut(s)	676, 987, 1036
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	2 cut(s)	365, 488
KflI	GGGWCCC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
LmnI	GCTCC	2 cut(s)	769, 892
LweI	GCATC	3 cut(s)	223, 408, 503
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	5, 367
MalI	GATC	6 cut(s)	258, 360, 434, 467, 627, 957
MboI	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
MboII	GAAGA	3 cut(s)	522, 864, 975
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	572
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	5 cut(s)	19, 89, 165, 372, 404
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	4 cut(s)	377, 1028, 1035, 1057
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	177, 370, 1019, 1022
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	4 cut(s)	519, 527, 858, 1029
Msp20I	TGGCCA	1 cut(s)	159
MspCI	CTTAAG	2 cut(s)	518, 526
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	103, 688
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
NlaIII	CATG	2 cut(s)	365, 488
NlaIV	GGNNCC	3 cut(s)	290, 291, 765
NmuCI	GTSAC	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	5 cut(s)	41, 481, 697, 920, 940
PflMI	CCANNNNNTGG	2 cut(s)	325, 725
PleI	GAGTC	4 cut(s)	377, 1028, 1035, 1056
PpsI	GAGTC	4 cut(s)	377, 1028, 1035, 1056
PpuMI	RGGWCCY	2 cut(s)	289, 576
PshBI	ATTAAT	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	572
Psp5II	RGGWCCY	2 cut(s)	289, 576
Psp6I	CCWGG	1 cut(s)	149
PspFI	CCCAGC	2 cut(s)	285, 337
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	290, 291, 765
PspPI	GGNCC	3 cut(s)	289, 488, 576
PspPPI	RGGWCCY	2 cut(s)	289, 576
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	572
SaqAI	TTAA	4 cut(s)	519, 527, 858, 1029
Sau3AI	GATC	6 cut(s)	256, 358, 432, 465, 625, 955
Sau96I	GGNCC	3 cut(s)	289, 488, 576
SchI	GAGTC	4 cut(s)	377, 1028, 1035, 1057
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	223, 408, 503
Sfr274I	CTCGAG	1 cut(s)	1043
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	3 cut(s)	289, 488, 576
SlaI	CTCGAG	1 cut(s)	1043
SmlI	CTYRAG	7 cut(s)	107, 137, 518, 526, 571, 1015, 1043
SmoI	CTYRAG	7 cut(s)	107, 137, 518, 526, 571, 1015, 1043
Sse9I	AATT	5 cut(s)	19, 89, 165, 372, 404
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	1 cut(s)	544
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	572
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	2 cut(s)	553, 758
TaqI	TCGA	5 cut(s)	44, 435, 500, 508, 1044
TasI	AATT	5 cut(s)	19, 89, 165, 372, 404
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	41, 481, 697, 920, 940
Tru1I	TTAA	4 cut(s)	519, 527, 858, 1029
Tru9I	TTAA	4 cut(s)	519, 527, 858, 1029
TscAI	CASTG	3 cut(s)	180, 210, 763
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	5 cut(s)	255, 473, 704, 795, 897
TspRI	CASTG	3 cut(s)	180, 210, 763
Van91I	CCANNNNNTGG	2 cut(s)	325, 725
Vha464I	CTTAAG	2 cut(s)	518, 526
VpaK11BI	GGWCC	3 cut(s)	289, 488, 576
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	2 cut(s)	19, 404
XhoI	CTCGAG	1 cut(s)	1043
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.