Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Reverse (-)

17693393 .. 17696237

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATTTCTTTCTTCAAGGCATAAAGCTCCATACCCGCCAACTCCTTCAGAACATTGAGCAGTCTCCTCTCCTCCCAAGTCCAATCCATGATGGTTCGGGAGCCACAGTTATCAATGAAGATCCAGAGTTTCCCTTCCCCAATGAGCATTTCAGATTTGGAATCATTCCTGCTGGCTCTACCGATGCCATTGTGATGTGCACAACTGGTGCTCGAGATCCTATAACATCTACGTTTCACATTGTCCTTGGGAAAAGGGTTTCCCTTGATGTAGCCCAAGTTGTAAGGTGGAAAACAACATCTACATCAAAGGTTGAACCTTTTGTGCGCTATGCAGCGTCTTTTGCCGGGTACGGATTTTATGGAGATGTCATTACTGAGAGTGAAAAATACCGTTGGATGGGTCCAAAAAGATATGATTATGCAGGAACAAGGGTATTTTTAAAGCACCGGTCCTATGAGGCGGAAGTAGCATATATAGAAGTCAAACCAGAAGGAAAGTCAATTCCTGAAAGAGGAAGTTTGAGCGGTCGCAAGCGACCATTTTGGAGCCCAAATAAATCCGATCAAGCAATGTGCCGTGTTAACTGCAAGGTCTGTAGCAGCACCACCCCTTGCTCATATCCAGGAGAAACAAAATGGTCCATATCAAAGGGAAAGTTTCTTAGCATTGGTGCTGCAGTAATTTCCAATAGAAATGAAAGAGCACCTGACGGTTTGGTGGCTGATGCACACCTTTCAGACGGTTTCATGCATCTCATATCGATCAAAGACTGCTCTCATGCTCTCTATCTATGGCATCTTACCCAGCTTGCAAAGAAGGGCGGAAACCCCTTCGATTTCAAGTTTGTTGAACATCACAAGACCACTGCTTTTACGTTCACGTCTTCCGGCAACGAGAGTGTATGGAATTTGGACGGGGAACTCTTTCAAGCACACCAATTATCGGCGCAAGTATTTCGAGGCCTTGTTAGCTTGTTTGCCTCCGGTCCTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

334

Amino Acids

37.11

Weight (kDa)

8.63

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	528
AciI	CCGC	4 cut(s)	37, 464, 528, 825
AclWI	GGATC	2 cut(s)	116, 212
AcsI	RAATTY	2 cut(s)	910, 996
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	400, 515, 946
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	17, 317, 844, 854, 932
AjiI	CACGTC	1 cut(s)	885
AjnI	CCWGG	1 cut(s)	625
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	28, 811, 975
AluI	AGCT	3 cut(s)	28, 811, 975
Alw21I	GWGCWC	3 cut(s)	203, 214, 709
Alw26I	GTCTC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	116, 212
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	964
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	335, 603, 677
ApoI	RAATTY	2 cut(s)	910, 996
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	2 cut(s)	330, 952
AspS9I	GGNCC	4 cut(s)	404, 453, 642, 989
AsuC2I	CCSGG	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	4 cut(s)	404, 453, 642, 989
BaeGI	GKGCMC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	3 cut(s)	203, 214, 709
BbvI	GCAGC	3 cut(s)	347, 615, 664
BccI	CCATC	2 cut(s)	86, 394
BceAI	ACGGC	1 cut(s)	564
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	598, 678
BisI	GCNGC	3 cut(s)	336, 604, 678
BlsI	GCNGC	3 cut(s)	337, 605, 679
Bme1390I	CCNGG	2 cut(s)	349, 627
Bme18I	GGWCC	4 cut(s)	404, 453, 642, 989
BmeT110I	CYCGRG	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	885
BmgT120I	GGNCC	4 cut(s)	404, 453, 642, 989
BmiI	GGNNCC	3 cut(s)	103, 405, 551
BmrFI	CCNGG	2 cut(s)	349, 627
BmsI	GCATC	4 cut(s)	175, 718, 763, 808
BpiI	GAAGAC	1 cut(s)	879
BpuMI	CCSGG	1 cut(s)	349
Bsa29I	ATCGAT	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	2 cut(s)	450, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 515, 946
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	400, 515, 946
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	57, 62
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	347, 615, 664
BseYI	CCCAGC	1 cut(s)	807
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	1 cut(s)	966
BshTI	ACCGGT	1 cut(s)	450
BshVI	ATCGAT	1 cut(s)	764
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	3 cut(s)	203, 214, 709
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	348, 451, 891, 987
BslI	CCNNNNNNNGG	3 cut(s)	400, 515, 946
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	966
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	4 cut(s)	203, 214, 554, 709
Bsp143I	GATC	4 cut(s)	121, 217, 565, 765
BspACI	CCGC	4 cut(s)	37, 464, 528, 825
BspANI	GGCC	1 cut(s)	966
BspCNI	CTCAG	1 cut(s)	370
BspDI	ATCGAT	1 cut(s)	764
BspLI	GGNNCC	3 cut(s)	103, 405, 551
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	2 cut(s)	116, 212
BsrBI	CCGCTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	121, 217, 565, 765
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	109, 395, 716, 746
BstC8I	GCNNGC	3 cut(s)	175, 536, 813
BstDEI	CTNAG	2 cut(s)	378, 665
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	330, 952
BstKTI	GATC	4 cut(s)	124, 220, 568, 768
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	4 cut(s)	121, 217, 565, 765
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 470, 972
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	2 cut(s)	347, 625
BstSFI	CTRYAG	2 cut(s)	598, 678
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	347, 615, 664
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	121, 217
BstYI	RGATCY	2 cut(s)	121, 217
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	966
BsuTUI	ATCGAT	1 cut(s)	764
BtrI	CACGTC	1 cut(s)	885
BtsCI	GGATG	1 cut(s)	405
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	3 cut(s)	175, 536, 813
CfoI	GCGC	2 cut(s)	330, 952
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	4 cut(s)	404, 453, 642, 989
ClaI	ATCGAT	1 cut(s)	764
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	3 cut(s)	89, 751, 782
CviJI	RGCY	9 cut(s)	28, 104, 177, 275, 552, 725, 811, 966, 975
CviKI_1	RGCY	9 cut(s)	28, 104, 177, 275, 552, 725, 811, 966, 975
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	378, 665
DpnI	GATC	4 cut(s)	123, 219, 567, 767
DpnII	GATC	4 cut(s)	121, 217, 565, 765
DraI	TTTAAA	1 cut(s)	444
EciI	GGCGGA	2 cut(s)	479, 840
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	966
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	4 cut(s)	404, 453, 642, 989
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	92, 754, 785
FatI	CATG	3 cut(s)	88, 750, 781
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	336, 604, 678
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	336, 604, 678
GlaI	GCGC	2 cut(s)	329, 951
GluI	GCNGC	3 cut(s)	336, 604, 678
GsaI	CCCAGC	1 cut(s)	811
HaeIII	GGCC	1 cut(s)	966
HapII	CCGG	4 cut(s)	348, 451, 891, 987
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	2 cut(s)	330, 952
Hin1II	CATG	3 cut(s)	92, 754, 785
Hin6I	GCGC	2 cut(s)	328, 950
HinP1I	GCGC	2 cut(s)	328, 950
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	1 cut(s)	162
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	4 cut(s)	348, 451, 891, 987
Hpy166II	GTNNAC	3 cut(s)	201, 586, 882
Hpy188I	TCNGA	4 cut(s)	51, 155, 565, 742
Hpy188III	TCNNGA	5 cut(s)	99, 125, 215, 509, 992
Hpy8I	GTNNAC	3 cut(s)	201, 586, 882
HpyAV	CCTTC	5 cut(s)	56, 145, 488, 814, 844
HpyCH4III	ACNGT	4 cut(s)	109, 395, 716, 746
HpyCH4IV	ACGT	3 cut(s)	233, 878, 884
HpyCH4V	TGCA	8 cut(s)	201, 335, 425, 591, 680, 731, 754, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 470, 972
HpyF3I	CTNAG	2 cut(s)	378, 665
HpySE526I	ACGT	3 cut(s)	233, 878, 884
Hsp92II	CATG	3 cut(s)	92, 754, 785
HspAI	GCGC	2 cut(s)	328, 950
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	121, 217, 565, 765
LmnI	GCTCC	3 cut(s)	33, 101, 549
Lsp1109I	GCAGC	3 cut(s)	347, 615, 664
LweI	GCATC	4 cut(s)	175, 718, 763, 808
MaeII	ACGT	3 cut(s)	233, 878, 884
MalI	GATC	4 cut(s)	123, 219, 567, 767
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	4 cut(s)	121, 217, 565, 765
MboII	GAAGA	3 cut(s)	5, 131, 879
MflI	RGATCY	2 cut(s)	121, 217
MhlI	GDGCHC	4 cut(s)	203, 214, 554, 709
MluCI	AATT	5 cut(s)	504, 684, 910, 941, 996
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	78, 83, 454, 509, 956, 994
Mph1103I	ATGCAT	1 cut(s)	756
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	2 cut(s)	443, 585
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	4 cut(s)	348, 451, 891, 987
MspR9I	CCNGG	2 cut(s)	349, 627
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	3 cut(s)	344, 470, 972
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	4 cut(s)	121, 217, 565, 765
NlaIII	CATG	3 cut(s)	92, 754, 785
NlaIV	GGNNCC	3 cut(s)	103, 405, 551
NsiI	ATGCAT	1 cut(s)	756
PaeR7I	CTCGAG	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	625
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	337, 605, 679
Psp6I	CCWGG	1 cut(s)	625
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	103, 405, 551
PspPI	GGNCC	4 cut(s)	404, 453, 642, 989
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	121, 217
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	443, 585
SatI	GCNGC	3 cut(s)	336, 604, 678
Sau3AI	GATC	4 cut(s)	121, 217, 565, 765
Sau96I	GGNCC	4 cut(s)	404, 453, 642, 989
ScrFI	CCNGG	2 cut(s)	349, 627
SduI	GDGCHC	4 cut(s)	203, 214, 554, 709
SfaNI	GCATC	4 cut(s)	175, 718, 763, 808
SfcI	CTRYAG	2 cut(s)	598, 678
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	4 cut(s)	404, 453, 642, 989
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	504, 684, 910, 941, 996
SseBI	AGGCCT	1 cut(s)	966
SsiI	CCGC	4 cut(s)	37, 464, 528, 825
StuI	AGGCCT	1 cut(s)	966
StyD4I	CCNGG	2 cut(s)	347, 625
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	109, 395, 716, 746
TaiI	ACGT	3 cut(s)	236, 881, 887
TaqI	TCGA	4 cut(s)	214, 764, 837, 961
TasI	AATT	5 cut(s)	504, 684, 910, 941, 996
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	443, 585
Tru9I	TTAA	2 cut(s)	443, 585
TscAI	CASTG	1 cut(s)	874
TseI	GCWGC	3 cut(s)	335, 603, 677
TspDTI	ATGAA	3 cut(s)	132, 714, 739
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	874
VneI	GTGCAC	1 cut(s)	199
VpaK11BI	GGWCC	4 cut(s)	404, 453, 642, 989
XagI	CCTNNNNNAGG	1 cut(s)	513
XapI	RAATTY	2 cut(s)	910, 996
XhoI	CTCGAG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	927
Zsp2I	ATGCAT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.