Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002160.1

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Forward (+)

6954 .. 9116

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002160.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtatcaggatgactcaacttgtttgtgcatcaaatttgcttcaagggttgcaccaaccgagatcaagttttcggatgtgtttgctgttgagctgatcaactatggtgtgattcatggaccaaatgtctcgaatgctcgaagatgccttaaggccttaaggttcaacgtgactatgagatttaccgctttacggtgcatggtttccagagctcaaggactttgccgtctgtttggatccttgctagatatacatttggtcataaggatctccacatatgtcagatatggaagtgggaagggaaatgcctgcaaaacttgggacagtgtggctcctatattctcccgtgctaaagtgaaaacaaagggtggtgatggctttttcaaccaaattcttaatggatttctttcttcaaggcataaagctccatatccaccaactccttcagatttccttgattctgctagttgtaatgagagtctcgttgtaaatgatccaagtgaaaccgttattgaagcttattctcagaataatgagcagtctcccctcctctcaagttcaaatattaatggctcaggactcaggagtctcaaatatcatgtaatgtgcaatttagtaagcattgtaggcttgaagtctttacctagtgtgctttccatttctctagagaaatggattcttcctatatttcagctgatattcttggatctgcagctgtacaagtggcatttggtcctcgagctccatgaggacatatgggggtactgggtaccgaaagtagaaaatcttgatcaagggagcagcttaggagtgaaaggctctgacaacggtcattctgtcaccttcacctttggcgaccaatggagctggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

8.57

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	225, 585
Acc65I	GGTACC	1 cut(s)	769
AccB1I	GGYRCC	1 cut(s)	769
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	5 cut(s)	231, 244, 275, 488, 714
AcsI	RAATTY	2 cut(s)	35, 390
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	719, 764, 771
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflII	CTTAAG	2 cut(s)	149, 157
AgsI	TTSAA	7 cut(s)	45, 166, 385, 414, 515, 561, 634
AhdI	GACNNNNNGTC	1 cut(s)	125
AluBI	AGCT	9 cut(s)	94, 212, 425, 518, 694, 715, 742, 804, 867
AluI	AGCT	9 cut(s)	94, 212, 425, 518, 694, 715, 742, 804, 867
Alw21I	GWGCWC	2 cut(s)	214, 744
Alw26I	GTCTC	4 cut(s)	133, 485, 546, 593
AlwI	GGATC	5 cut(s)	231, 244, 275, 488, 714
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	712, 801
ApoI	RAATTY	2 cut(s)	35, 390
AseI	ATTAAT	1 cut(s)	567
Asp718I	GGTACC	1 cut(s)	769
AspS9I	GGNCC	2 cut(s)	119, 733
AsuHPI	GGTGA	3 cut(s)	383, 832, 838
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	119, 733
BamHI	GGATCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	2 cut(s)	214, 744
Bbv12I	GWGCWC	2 cut(s)	214, 744
BbvI	GCAGC	2 cut(s)	724, 813
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	210
BclI	TGATCA	2 cut(s)	96, 790
BcoDI	GTCTC	4 cut(s)	133, 485, 546, 593
BfaI	CTAG	4 cut(s)	245, 465, 645, 665
BfmI	CTRYAG	1 cut(s)	710
BfrI	CTTAAG	2 cut(s)	149, 157
BisI	GCNGC	2 cut(s)	713, 802
BlsI	GCNGC	2 cut(s)	714, 803
Bme18I	GGWCC	2 cut(s)	119, 733
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	119, 733
BmiI	GGNNCC	3 cut(s)	238, 333, 771
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	2 cut(s)	39, 134
BmuI	ACTGGG	1 cut(s)	775
BoxI	GACNNNNGTC	1 cut(s)	828
Bpu10I	CCTNAGC	2 cut(s)	574, 805
BpuEI	CTTGAG	2 cut(s)	198, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	770
BseGI	GGATG	2 cut(s)	16, 82
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	539, 588, 595
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	724, 813
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	2 cut(s)	214, 744
BsiHKCI	CYCGRG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	4 cut(s)	133, 485, 546, 593
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	2 cut(s)	214, 744
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	538, 587, 594
BspLI	GGNNCC	3 cut(s)	238, 333, 771
BspMAI	CTGCAG	1 cut(s)	714
BspPI	GGATC	5 cut(s)	231, 244, 275, 488, 714
BspT107I	GGYRCC	1 cut(s)	769
BspTI	CTTAAG	2 cut(s)	149, 157
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	770
BssMI	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
Bst4CI	ACNGT	4 cut(s)	195, 326, 508, 830
BstAFI	CTTAAG	2 cut(s)	149, 157
BstAUI	TGTACA	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	4 cut(s)	525, 574, 581, 805
BstF5I	GGATG	2 cut(s)	16, 82
BstKTI	GATC	7 cut(s)	66, 99, 239, 270, 496, 709, 793
BstMAI	GTCTC	4 cut(s)	133, 485, 546, 593
BstMBI	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSFI	CTRYAG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	724, 813
BstX2I	RGATCY	3 cut(s)	236, 267, 706
BstYI	RGATCY	3 cut(s)	236, 267, 706
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	16, 82
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	119, 733
Csp6I	GTAC	3 cut(s)	718, 763, 770
CviAII	CATG	4 cut(s)	116, 199, 599, 746
CviQI	GTAC	3 cut(s)	718, 763, 770
DdeI	CTNAG	4 cut(s)	525, 574, 581, 805
DpnI	GATC	7 cut(s)	65, 98, 238, 269, 495, 708, 792
DpnII	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
DrdI	GACNNNNNNGTC	2 cut(s)	225, 585
DriI	GACNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	2 cut(s)	225, 585
Eam1105I	GACNNNNNGTC	1 cut(s)	125
Ecl136II	GAGCTC	2 cut(s)	212, 742
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	2 cut(s)	214, 744
Eco47I	GGWCC	2 cut(s)	119, 733
Eco53kI	GAGCTC	2 cut(s)	212, 742
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	737
EcoICRI	GAGCTC	2 cut(s)	212, 742
EcoT38I	GRGCYC	2 cut(s)	214, 744
FaeI	CATG	4 cut(s)	119, 202, 602, 749
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	115, 198, 598, 745
FauNDI	CATATG	2 cut(s)	277, 755
FbaI	TGATCA	2 cut(s)	96, 790
Fnu4HI	GCNGC	2 cut(s)	713, 802
FokI	GGATG	2 cut(s)	23, 89
FriOI	GRGCYC	2 cut(s)	214, 744
Fsp4HI	GCNGC	2 cut(s)	713, 802
FspBI	CTAG	4 cut(s)	245, 465, 645, 665
GluI	GCNGC	2 cut(s)	713, 802
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	119, 202, 602, 749
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	7 cut(s)	14, 112, 458, 478, 579, 586, 676
HphI	GGTGA	3 cut(s)	383, 832, 838
Hpy188I	TCNGA	5 cut(s)	76, 284, 448, 528, 823
Hpy188III	TCNNGA	7 cut(s)	8, 130, 207, 576, 583, 665, 788
HpyAV	CCTTC	3 cut(s)	292, 453, 853
HpyCH4III	ACNGT	4 cut(s)	195, 326, 508, 830
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	30, 53, 198, 312, 609, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	4 cut(s)	525, 574, 581, 805
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	119, 202, 602, 749
KpnI	GGTACC	1 cut(s)	773
Ksp22I	TGATCA	2 cut(s)	96, 790
Kzo9I	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
LmnI	GCTCC	5 cut(s)	337, 430, 747, 798, 864
LpnPI	CCDG	6 cut(s)	220, 322, 561, 568, 751, 853
Lsp1109I	GCAGC	2 cut(s)	724, 813
LweI	GCATC	2 cut(s)	39, 134
MaeI	CTAG	4 cut(s)	245, 465, 645, 665
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	169, 838
MalI	GATC	7 cut(s)	65, 98, 238, 269, 495, 708, 792
MboI	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
MboII	GAAGA	3 cut(s)	153, 402, 671
MflI	RGATCY	3 cut(s)	236, 267, 706
MhlI	GDGCHC	2 cut(s)	214, 744
MluCI	AATT	3 cut(s)	35, 390, 610
MlyI	GAGTC	4 cut(s)	8, 487, 573, 595
MnlI	CCTC	4 cut(s)	557, 560, 742, 746
MseI	TTAA	4 cut(s)	150, 158, 396, 567
MspA1I	CMGCKG	2 cut(s)	694, 715
MspCI	CTTAAG	2 cut(s)	149, 157
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeI	CATATG	2 cut(s)	277, 755
NdeII	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
NlaIII	CATG	4 cut(s)	119, 202, 602, 749
NlaIV	GGNNCC	3 cut(s)	238, 333, 771
NmuCI	GTSAC	2 cut(s)	169, 838
PaeR7I	CTCGAG	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	112, 458, 676
PkrI	GCNGC	2 cut(s)	714, 803
PleI	GAGTC	4 cut(s)	8, 486, 573, 594
PpsI	GAGTC	4 cut(s)	8, 486, 573, 594
PshAI	GACNNNNGTC	1 cut(s)	828
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	2 cut(s)	214, 744
PspN4I	GGNNCC	3 cut(s)	238, 333, 771
PspPI	GGNCC	2 cut(s)	119, 733
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	714
PsuI	RGATCY	3 cut(s)	236, 267, 706
PvuII	CAGCTG	2 cut(s)	694, 715
RsaI	GTAC	3 cut(s)	719, 764, 771
RsaNI	GTAC	3 cut(s)	718, 763, 770
SacI	GAGCTC	2 cut(s)	214, 744
SaqAI	TTAA	4 cut(s)	150, 158, 396, 567
SatI	GCNGC	2 cut(s)	713, 802
Sau3AI	GATC	7 cut(s)	63, 96, 236, 267, 493, 706, 790
Sau96I	GGNCC	2 cut(s)	119, 733
SchI	GAGTC	4 cut(s)	8, 487, 573, 595
SduI	GDGCHC	2 cut(s)	214, 744
SfaNI	GCATC	2 cut(s)	39, 134
SfcI	CTRYAG	1 cut(s)	710
Sfr274I	CTCGAG	1 cut(s)	737
SinI	GGWCC	2 cut(s)	119, 733
SlaI	CTCGAG	1 cut(s)	737
SmlI	CTYRAG	5 cut(s)	149, 157, 213, 553, 737
SmoI	CTYRAG	5 cut(s)	149, 157, 213, 553, 737
Sse9I	AATT	3 cut(s)	35, 390, 610
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	4 cut(s)	245, 465, 645, 665
SstI	GAGCTC	2 cut(s)	214, 744
StuI	AGGCCT	1 cut(s)	155
TaaI	ACNGT	4 cut(s)	195, 326, 508, 830
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	131, 139, 738
TasI	AATT	3 cut(s)	35, 390, 610
TatI	WGTACW	1 cut(s)	717
TfiI	GAWTC	3 cut(s)	112, 458, 676
Tru1I	TTAA	4 cut(s)	150, 158, 396, 567
Tru9I	TTAA	4 cut(s)	150, 158, 396, 567
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	169, 838
TseI	GCWGC	2 cut(s)	712, 801
Tsp45I	GTSAC	2 cut(s)	169, 838
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	331
Vha464I	CTTAAG	2 cut(s)	149, 157
VpaK11BI	GGWCC	2 cut(s)	119, 733
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	35, 390
XbaI	TCTAGA	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	737
XspI	CTAG	4 cut(s)	245, 465, 645, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.