Rmu_ssc0000206.1_g000002

Ceramide

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000206.1
Physical Location & Seq
Reverse (-)
24330 .. 28242
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000206.1_g000002.1.cds

Sequence Viewer

Length: 1842 bp
atggaacgagacgatgtagatggctctattcaacaacaccaatctcccccacatgcacagtttgacggccaagcctcccttctgagctgcacgctttcattggaccacgttggccaagttagcctctccttcaactctgatgggttgtcttggagattgctcgagccattggacaatgatgactcaacttgtttgtgcatcaaatttgcttcaaaggttgcgacaaccgatatcaagtttgcggatgtgtatgctgttgagctgatcaactatggcgtgattcatggatcaaatgtctcaaaggctcgaaaatgccttaagggtgaacgtgtctctgagatgtaccgctttacagtgcatggtttccagagctcaaggactcttccgtctgttcgtgtccttcctacatatacatttggtcataaggatctccacatatgtcagatttgggtcaatcaaatcaaggcttctctggacttagagcaggggaggccaaagaatcttctggtttttgttcatccaaggagtgggaagggaaatggctgcaaaacttgggacagtgtggctcctatattctcccgtgctaaagtgaaaacaaaggtgattgtgaccgaaagggcaggtcatgcgtatgatgcgatggcaactatagggaacaaggagcttatttcatatgatggagttatagctgttggtggtgatggttttttcaatgaaattcttaatggatttctttcttcaaggcataaagctccatatccaccaactccttcagatttcctcgattctgctagttgtaatgagagtctcattgtaaatgatccaagtgaaaccgttattgaagcttcttctcagaataatgagcagtctcccctcctctcaagttcaagtattaatggctcaggagtcttaaatatcaatcaagagcctgagatttccctccccaatgaacatttaagatttggactcattcctgctggctcaactgatgccattgtgatgtgtacaactggggctcgagatcctataacatctgcatttcacattgtccttggtaaaagagtgtggcttgatgtagcccaagttgtgaggtggaaaacagaatctacatcagaggttgaaccttatgtgcgctatgcagcttcttttgctgggtatggattttatggagatgtcattacagagagtgaaaagtaccgttggatgggacctaaacgatatgattatgcaggaacaagggtgtttttgaggcacaggtcctatcaggcagaaatagcatatttagatgtcaaatcagaagatcgagattcaacttctgagaaagataatcttggtggtcgcaagcgaccattttggagctcgaataaatctgaaaaggtgatatgccgtgccaactgcaatgtttgttgcaccaagcctattcacaggtccacagatgattcccatacgcccccctactcacatgcaggagagacaaaatggtccagttccaagggaaagtttctcagtgtcggtgctgcagtaatttcttgtagaaatgaaaaagcacctgatggtttggtggctgatgcgcatctttcagatggtttcctccatctcatattgatcaaagactgtcctcatgctctctatctttggcatcttacacagcttgcaaggaaaggtggaaatccttttgatttcaagtttgtggaacaccacaagacccctgcttttacatttacttcttctggcaatgagagtgtttggaatttggatggtgaagtatttcaagcacaccagctatcagcacaagtattccgtggtcttgtcagcttgttcgccactggtcctgaagtttga

Protein Analysis

613

Amino Acids

67.75

Weight (kDa)

6.64

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 385, 1480
Acc16I TGCGCA 1 cut(s) 1572
Acc36I ACCTGC 1 cut(s) 611
AccB7I CCANNNNNTGG 1 cut(s) 527
AciI CCGC 2 cut(s) 242, 346
AclWI GGATC 4 cut(s) 295, 435, 815, 1016
AcoI YGGCCR 2 cut(s) 67, 112
AcsI RAATTY 3 cut(s) 203, 717, 1750
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 3 cut(s) 344, 1006, 1196
AfiI CCNNNNNNNGG 2 cut(s) 527, 1204
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
Alw21I GWGCWC 2 cut(s) 374, 1361
Alw26I GTCTC 6 cut(s) 3, 301, 337, 812, 873, 1466
AlwI GGATC 4 cut(s) 295, 435, 815, 1016
Ama87I CYCGRG 2 cut(s) 161, 1017
AoxI GGCC 3 cut(s) 67, 112, 491
ApeKI GCWGC 4 cut(s) 87, 543, 1139, 1517
ApoI RAATTY 3 cut(s) 203, 717, 1750
AseI ATTAAT 1 cut(s) 894
Asp700I GAANNNNTTC 1 cut(s) 1767
AspLEI GCGC 2 cut(s) 1134, 1573
AspS9I GGNCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
AsuHPI GGTGA 5 cut(s) 335, 613, 710, 1390, 1772
AvaI CYCGRG 2 cut(s) 161, 1017
AvaII GGWCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 3 cut(s) 374, 1018, 1361
Bbv12I GWGCWC 2 cut(s) 374, 1361
BbvI GCAGC 4 cut(s) 74, 530, 1151, 1504
BceAI ACGGC 2 cut(s) 82, 1371
BclI TGATCA 2 cut(s) 264, 1605
BcoDI GTCTC 6 cut(s) 3, 301, 337, 812, 873, 1466
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 2 cut(s) 648, 1518
BfrI CTTAAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 611
BisI GCNGC 4 cut(s) 88, 544, 1140, 1518
BlsI GCNGC 4 cut(s) 89, 545, 1141, 1519
Bme18I GGWCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
BmeT110I CYCGRG 2 cut(s) 161, 1017
BmgT120I GGNCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
BmiI GGNNCC 2 cut(s) 567, 1209
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 6 cut(s) 207, 625, 979, 1558, 1582, 1648
BmuI ACTGGG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 901
BpuEI CTTGAG 2 cut(s) 358, 865
BsaBI GATNNNNATC 1 cut(s) 1572
BsaJI CCNNGG 4 cut(s) 521, 1051, 1491, 1801
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 1204
Bse1I ACTGG 3 cut(s) 1015, 1485, 1831
Bse3DI GCAATG 2 cut(s) 1405, 1741
Bse8I GATNNNNATC 1 cut(s) 1572
BseDI CCNNGG 4 cut(s) 521, 1051, 1491, 1801
BseGI GGATG 4 cut(s) 250, 517, 1209, 1762
BseJI GATNNNNATC 1 cut(s) 1572
BseLI CCNNNNNNNGG 2 cut(s) 527, 1204
BseMI GCAATG 2 cut(s) 1405, 1741
BseMII CTCAG 7 cut(s) 74, 327, 866, 915, 921, 1308, 1519
BseNI ACTGG 3 cut(s) 1015, 1485, 1831
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 4 cut(s) 74, 530, 1151, 1504
BseYI CCCAGC 1 cut(s) 1151
BsgI GTGCAG 1 cut(s) 73
BshFI GGCC 3 cut(s) 69, 114, 493
BsiHKAI GWGCWC 2 cut(s) 374, 1361
BsiHKCI CYCGRG 2 cut(s) 161, 1017
BslFI GGGAC 2 cut(s) 569, 1221
BslI CCNNNNNNNGG 2 cut(s) 527, 1204
BsmAI GTCTC 6 cut(s) 3, 301, 337, 812, 873, 1466
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 569, 1221
BsnI GGCC 3 cut(s) 69, 114, 493
BsoBI CYCGRG 2 cut(s) 161, 1017
Bsp1286I GDGCHC 3 cut(s) 374, 1018, 1361
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
BspACI CCGC 2 cut(s) 242, 346
BspANI GGCC 3 cut(s) 69, 114, 493
BspCNI CTCAG 7 cut(s) 75, 328, 865, 914, 922, 1309, 1518
BspLI GGNNCC 2 cut(s) 567, 1209
BspMAI CTGCAG 1 cut(s) 1522
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 4 cut(s) 295, 435, 815, 1016
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 1405, 1741
BsrGI TGTACA 1 cut(s) 1004
BsrI ACTGG 3 cut(s) 1015, 1485, 1831
BssECI CCNNGG 4 cut(s) 521, 1051, 1491, 1801
BssMI GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
BssT1I CCWWGG 3 cut(s) 521, 1051, 1491
Bst4CI ACNGT 6 cut(s) 60, 355, 560, 835, 1199, 1616
Bst6I CTCTTC 1 cut(s) 387
BstAFI CTTAAG 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 1004
BstC8I GCNNGC 4 cut(s) 92, 979, 1343, 1653
BstDEI CTNAG 8 cut(s) 83, 336, 478, 852, 901, 930, 1317, 1505
BstDSI CCRYGG 1 cut(s) 1801
BstF5I GGATG 4 cut(s) 250, 517, 1209, 1762
BstHHI GCGC 2 cut(s) 1134, 1573
BstKTI GATC 7 cut(s) 267, 290, 430, 823, 1024, 1303, 1608
BstMAI GTCTC 6 cut(s) 3, 301, 337, 812, 873, 1466
BstMBI GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
BstMWI GCNNNNNNNGC 6 cut(s) 120, 490, 626, 635, 1148, 1274
BstNSI RCATGY 2 cut(s) 56, 1466
BstSFI CTRYAG 2 cut(s) 648, 1518
BstV1I GCAGC 4 cut(s) 74, 530, 1151, 1504
BstX2I RGATCY 2 cut(s) 427, 1021
BstYI RGATCY 2 cut(s) 427, 1021
BsuRI GGCC 3 cut(s) 69, 114, 493
BtgI CCRYGG 1 cut(s) 1801
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 4 cut(s) 250, 517, 1209, 1762
BtsIMutI CAGTG 4 cut(s) 360, 565, 1513, 1824
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 4 cut(s) 92, 979, 1343, 1653
CfoI GCGC 2 cut(s) 1134, 1573
Cfr13I GGNCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
Csp6I GTAC 3 cut(s) 343, 1005, 1195
CviAII CATG 6 cut(s) 53, 284, 359, 626, 1463, 1622
CviQI GTAC 3 cut(s) 343, 1005, 1195
DdeI CTNAG 8 cut(s) 83, 336, 478, 852, 901, 930, 1317, 1505
DpnI GATC 7 cut(s) 266, 289, 429, 822, 1023, 1302, 1607
DpnII GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
DrdI GACNNNNNNGTC 2 cut(s) 385, 1480
DseDI GACNNNNNNGTC 2 cut(s) 385, 1480
EaeI YGGCCR 2 cut(s) 67, 112
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 2 cut(s) 372, 1359
Eco130I CCWWGG 3 cut(s) 521, 1051, 1491
Eco24I GRGCYC 3 cut(s) 374, 1018, 1361
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
Eco53kI GAGCTC 2 cut(s) 372, 1359
Eco57I CTGAAG 1 cut(s) 756
Eco88I CYCGRG 2 cut(s) 161, 1017
EcoICRI GAGCTC 2 cut(s) 372, 1359
EcoO109I RGGNCCY 2 cut(s) 1208, 1257
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 521, 1051, 1491
EcoT38I GRGCYC 3 cut(s) 374, 1018, 1361
ErhI CCWWGG 3 cut(s) 521, 1051, 1491
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 6 cut(s) 56, 287, 362, 629, 1466, 1625
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 1314, 1346
FaqI GGGAC 2 cut(s) 569, 1221
FatI CATG 6 cut(s) 52, 283, 358, 625, 1462, 1621
FauNDI CATATG 2 cut(s) 437, 673
FbaI TGATCA 2 cut(s) 264, 1605
Fnu4HI GCNGC 4 cut(s) 88, 544, 1140, 1518
FokI GGATG 4 cut(s) 257, 504, 1216, 1769
FriOI GRGCYC 3 cut(s) 374, 1018, 1361
Fsp4HI GCNGC 4 cut(s) 88, 544, 1140, 1518
FspAI RTGCGCAY 1 cut(s) 1572
FspBI CTAG 1 cut(s) 792
FspI TGCGCA 1 cut(s) 1572
GlaI GCGC 2 cut(s) 1133, 1572
GluI GCNGC 4 cut(s) 88, 544, 1140, 1518
GsaI CCCAGC 1 cut(s) 1155
HaeIII GGCC 3 cut(s) 69, 114, 493
HhaI GCGC 2 cut(s) 1134, 1573
Hin1II CATG 6 cut(s) 56, 287, 362, 629, 1466, 1625
Hin6I GCGC 2 cut(s) 1132, 1571
HinP1I GCGC 2 cut(s) 1132, 1571
HindIII AAGCTT 1 cut(s) 843
HphI GGTGA 5 cut(s) 335, 613, 710, 1390, 1772
Hpy166II GTNNAC 3 cut(s) 326, 1005, 1431
Hpy188III TCNNGA 7 cut(s) 367, 473, 903, 923, 1019, 1304, 1832
Hpy8I GTNNAC 3 cut(s) 326, 1005, 1431
HpyAV CCTTC 5 cut(s) 89, 139, 410, 526, 780
HpyCH4III ACNGT 6 cut(s) 60, 355, 560, 835, 1199, 1616
HpyCH4IV ACGT 2 cut(s) 108, 328
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 490, 626, 635, 1148, 1274
HpyF3I CTNAG 8 cut(s) 83, 336, 478, 852, 901, 930, 1317, 1505
HpySE526I ACGT 2 cut(s) 108, 328
Hsp92II CATG 6 cut(s) 56, 287, 362, 629, 1466, 1625
HspAI GCGC 2 cut(s) 1132, 1571
Ksp22I TGATCA 2 cut(s) 264, 1605
Kzo9I GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
LmnI GCTCC 4 cut(s) 571, 661, 757, 1356
Lsp1109I GCAGC 4 cut(s) 74, 530, 1151, 1504
LweI GCATC 6 cut(s) 207, 625, 979, 1558, 1582, 1648
MaeI CTAG 1 cut(s) 792
MaeII ACGT 2 cut(s) 108, 328
MaeIII GTNAC 1 cut(s) 607
MalI GATC 7 cut(s) 266, 289, 429, 822, 1023, 1302, 1607
MboI GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
MboII GAAGA 6 cut(s) 374, 494, 729, 840, 1310, 1719
MflI RGATCY 2 cut(s) 427, 1021
MhlI GDGCHC 3 cut(s) 374, 1018, 1361
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 4 cut(s) 203, 717, 1524, 1750
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 5 cut(s) 176, 373, 814, 915, 960
MmeI TCCRAC 1 cut(s) 1181
Mox20I TGGCCA 1 cut(s) 114
MroXI GAANNNNTTC 1 cut(s) 1767
MscI TGGCCA 1 cut(s) 114
MseI TTAA 5 cut(s) 318, 723, 894, 911, 956
MslI CAYNNNNRTG 2 cut(s) 630, 998
Msp20I TGGCCA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 317
MwoI GCNNNNNNNGC 6 cut(s) 120, 490, 626, 635, 1148, 1274
NdeI CATATG 2 cut(s) 437, 673
NdeII GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
NlaIII CATG 6 cut(s) 56, 287, 362, 629, 1466, 1625
NlaIV GGNNCC 2 cut(s) 567, 1209
NmuCI GTSAC 1 cut(s) 607
NsbI TGCGCA 1 cut(s) 1572
NspI RCATGY 2 cut(s) 56, 1466
PaeR7I CTCGAG 2 cut(s) 161, 1017
PdmI GAANNNNTTC 1 cut(s) 1767
PfeI GAWTC 6 cut(s) 280, 499, 785, 1103, 1307, 1439
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 4 cut(s) 89, 545, 1141, 1519
PleI GAGTC 5 cut(s) 176, 373, 813, 914, 960
PpsI GAGTC 5 cut(s) 176, 373, 813, 914, 960
PpuMI RGGWCCY 2 cut(s) 1208, 1257
PshBI ATTAAT 1 cut(s) 894
Psp124BI GAGCTC 2 cut(s) 374, 1361
Psp5II RGGWCCY 2 cut(s) 1208, 1257
PspFI CCCAGC 1 cut(s) 1151
PspN4I GGNNCC 2 cut(s) 567, 1209
PspPI GGNCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
PspPPI RGGWCCY 2 cut(s) 1208, 1257
PspXI VCTCGAGB 1 cut(s) 161
PstI CTGCAG 1 cut(s) 1522
PsuI RGATCY 2 cut(s) 427, 1021
RsaI GTAC 3 cut(s) 344, 1006, 1196
RsaNI GTAC 3 cut(s) 343, 1005, 1195
RseI CAYNNNNRTG 2 cut(s) 630, 998
SacI GAGCTC 2 cut(s) 374, 1361
SaqAI TTAA 5 cut(s) 318, 723, 894, 911, 956
SatI GCNGC 4 cut(s) 88, 544, 1140, 1518
Sau3AI GATC 7 cut(s) 264, 287, 427, 820, 1021, 1300, 1605
Sau96I GGNCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
SchI GAGTC 5 cut(s) 176, 373, 814, 915, 960
SduI GDGCHC 3 cut(s) 374, 1018, 1361
SfaNI GCATC 6 cut(s) 207, 625, 979, 1558, 1582, 1648
SfcI CTRYAG 2 cut(s) 648, 1518
Sfr274I CTCGAG 2 cut(s) 161, 1017
SinI GGWCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
SlaI CTCGAG 2 cut(s) 161, 1017
SmiMI CAYNNNNRTG 2 cut(s) 630, 998
SmlI CTYRAG 5 cut(s) 161, 317, 373, 880, 1017
SmoI CTYRAG 5 cut(s) 161, 317, 373, 880, 1017
Sse9I AATT 4 cut(s) 203, 717, 1524, 1750
SsiI CCGC 2 cut(s) 242, 346
SspMI CTAG 1 cut(s) 792
SstI GAGCTC 2 cut(s) 374, 1361
StyI CCWWGG 3 cut(s) 521, 1051, 1491
TaaI ACNGT 6 cut(s) 60, 355, 560, 835, 1199, 1616
TaiI ACGT 2 cut(s) 111, 331
TaqI TCGA 6 cut(s) 162, 307, 783, 1018, 1303, 1361
TaqII GACCGA 1 cut(s) 626
TasI AATT 4 cut(s) 203, 717, 1524, 1750
TatI WGTACW 1 cut(s) 1004
TfiI GAWTC 6 cut(s) 280, 499, 785, 1103, 1307, 1439
Tru1I TTAA 5 cut(s) 318, 723, 894, 911, 956
Tru9I TTAA 5 cut(s) 318, 723, 894, 911, 956
TscAI CASTG 4 cut(s) 360, 565, 1513, 1831
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 4 cut(s) 87, 543, 1139, 1517
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 7 cut(s) 87, 272, 506, 660, 729, 963, 1554
TspGWI ACGGA 2 cut(s) 375, 1790
TspRI CASTG 4 cut(s) 360, 565, 1513, 1831
Van91I CCANNNNNTGG 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 6 cut(s) 103, 1208, 1257, 1428, 1482, 1829
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 3 cut(s) 203, 717, 1750
XceI RCATGY 2 cut(s) 56, 1466
XhoI CTCGAG 2 cut(s) 161, 1017
XmnI GAANNNNTTC 1 cut(s) 1767
XspI CTAG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.