Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005461

Physical Location & Seq

Genomic Coordinates Forward (+)

21132421 .. 21134916

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTAGGAGGTTACTCCGTAAATGTTAGGATTCATGCGGGAACTCAGGAAGTTATTGGCGGCTATGATTATGTATTTTCTGAGAATGATCTTGTGGCTCACAAAGATAGGAAGCACATTGGCACCCAGGATGACTCAACTTGTTTATGCATCAAATTTGCTTCAAAGGTTGCACCAACCGAGATCGAGTTTTCGGATGTGTATGCTGTTGTGCTGATCAACTATGGTGTGATTCATGGACCAAATATCTCGAATGCTCGAAGATGCCTTAAGGCCTTAAGGGTCAACGTTTACCGCTTTACGGTGCATAGTTTCCAGAGCTCAAGGACTTTACCATCTGTTCAGGTCCTTGCTACATATACCTTTGGTCATAAGGATCTCCACATATGTCAGATATGGGTCAATCAAATCAATGCTTCTCTGGACTTAGAGCAGGGGACGCCAAAGAATCTTTTGGTTTTTGTTCATCCAAGGAGTGGGAAGGGAAATGCTTGCAAAACTTGGGACAGTGTGGCTCGTATTTTCTCCCGTGCTAAAGTGAAAACAAAGGGTGGTGATGGTTTTCTCAACAATATTCTTAATGGATTTCTTTCTTCAAGGTATAAAGTTCCATATCCACCAACTCCTTCAGATTTCCTTGATTCTGCTTGTTGCAATGAGAATCTCATTGTAAATGATCCAAGTGAAACCATTATTGAAGCTTCTTCTCAGAATAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001727 GO:0001729 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009987 GO:0010941 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0030258 GO:0034641 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044255 GO:0046834 GO:0046872 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

240

Amino Acids

26.6

Weight (kDa)

8.13

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51290 AT5G51290
fragaria_vesca	FvH4_7g27040 FvH4_7g27040
malus_domestica	MD01G1178000.v1.1 MD07G1250200.v1.1
prunus_persica	Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1 Prupe.2G273600_v2.0.a1
pyrus_communis	pycom01g18880
rosa_chinensis	RchiOBHm_Chr1g0337211 RchiOBHm_Chr1g0373861
rosa_laevigata	RLG00000026800 RLG00000029293
rosa_multiflora	Rmu_sc0002160.1_g000003 Rmu_sc0013735.1_g000011 Rmu_ssc0000206.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283960 Rroxscaffold_4G00314670
rosa_rugosa	Rorug01G0132600.1 Rorug01G0379600
rosa_samantha	Rh1AG389300 Rh1BG353500 Rh1CG106300 Rh1CG366800 Rh1DG108300 Rh1DG115200 Rh1DG384500
rosa_wichuraiana	Rw1G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	3 cut(s)	38, 60, 295
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	2 cut(s)	384, 671
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	301, 476
AflII	CTTAAG	2 cut(s)	269, 277
AgsI	TTSAA	3 cut(s)	165, 597, 698
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	321, 701
AluI	AGCT	2 cut(s)	321, 701
Alw21I	GWGCWC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	384, 671
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	239, 346
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	239, 346
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	2 cut(s)	343, 551
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	1 cut(s)	5
BfrI	CTTAAG	2 cut(s)	269, 277
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	2 cut(s)	239, 346
BmgT120I	GGNCC	2 cut(s)	239, 346
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	159, 254
BpuEI	CTTGAG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	126, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 476
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	126, 470
BseGI	GGATG	3 cut(s)	136, 202, 466
BseLI	CCNNNNNNNGG	2 cut(s)	301, 476
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	3 cut(s)	59, 72, 722
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	451, 518
BslI	CCNNNNNNNGG	2 cut(s)	301, 476
BsmFI	GGGAC	2 cut(s)	451, 518
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	5 cut(s)	88, 183, 216, 376, 676
BspACI	CCGC	3 cut(s)	38, 60, 295
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	58, 73, 721
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	384, 671
BspT107I	GGYRCC	1 cut(s)	122
BspTI	CTTAAG	2 cut(s)	269, 277
BsrDI	GCAATG	1 cut(s)	661
BssECI	CCNNGG	2 cut(s)	126, 470
BssMI	GATC	5 cut(s)	88, 183, 216, 376, 676
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	304, 509
BstACI	GRCGYC	1 cut(s)	440
BstAFI	CTTAAG	2 cut(s)	269, 277
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	4 cut(s)	45, 81, 427, 708
BstF5I	GGATG	3 cut(s)	136, 202, 466
BstKTI	GATC	5 cut(s)	91, 186, 219, 379, 679
BstMBI	GATC	5 cut(s)	88, 183, 216, 376, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	136, 202, 466
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	239, 346
CseI	GACGC	1 cut(s)	448
CviAII	CATG	2 cut(s)	35, 236
CviJI	RGCY	6 cut(s)	63, 98, 275, 321, 515, 701
CviKI_1	RGCY	6 cut(s)	63, 98, 275, 321, 515, 701
DdeI	CTNAG	4 cut(s)	45, 81, 427, 708
DpnI	GATC	5 cut(s)	90, 185, 218, 378, 678
DpnII	GATC	5 cut(s)	88, 183, 216, 376, 676
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	239, 346
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	2 cut(s)	38, 239
FaqI	GGGAC	2 cut(s)	451, 518
FatI	CATG	2 cut(s)	34, 235
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	3 cut(s)	143, 209, 453
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	38, 239
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	6 cut(s)	31, 134, 232, 448, 641, 661
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	286, 292
Hpy188I	TCNGA	5 cut(s)	82, 196, 393, 631, 711
Hpy188III	TCNNGA	4 cut(s)	47, 250, 316, 422
Hpy8I	GTNNAC	2 cut(s)	286, 292
HpyAV	CCTTC	2 cut(s)	475, 636
HpyCH4III	ACNGT	2 cut(s)	304, 509
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	5 cut(s)	150, 173, 307, 495, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	4 cut(s)	45, 81, 427, 708
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	38, 239
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	88, 183, 216, 376, 676
LpnPI	CCDG	7 cut(s)	32, 113, 140, 329, 329, 407, 419
LweI	GCATC	2 cut(s)	159, 254
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	5 cut(s)	90, 185, 218, 378, 678
MboI	GATC	5 cut(s)	88, 183, 216, 376, 676
MboII	GAAGA	3 cut(s)	273, 585, 696
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	152
MseI	TTAA	3 cut(s)	270, 278, 579
MspCI	CTTAAG	2 cut(s)	269, 277
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	5 cut(s)	88, 183, 216, 376, 676
NlaIII	CATG	2 cut(s)	38, 239
NlaIV	GGNNCC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	275
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	5 cut(s)	31, 232, 448, 641, 661
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	323
Psp1406I	AACGTT	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	239, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	270, 278, 579
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	5 cut(s)	88, 183, 216, 376, 676
Sau96I	GGNCC	2 cut(s)	239, 346
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	8 cut(s)	13, 171, 291, 323, 348, 365, 602, 703
SfaNI	GCATC	2 cut(s)	159, 254
SinI	GGWCC	2 cut(s)	239, 346
SmlI	CTYRAG	3 cut(s)	269, 277, 322
SmoI	CTYRAG	3 cut(s)	269, 277, 322
Sse9I	AATT	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	3 cut(s)	38, 60, 295
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	2 cut(s)	304, 509
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	186, 251, 259
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	5 cut(s)	31, 232, 448, 641, 661
Tru1I	TTAA	3 cut(s)	270, 278, 579
Tru9I	TTAA	3 cut(s)	270, 278, 579
TscAI	CASTG	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	23, 224, 455
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	476
Vha464I	CTTAAG	2 cut(s)	269, 277
VpaK11BI	GGWCC	2 cut(s)	239, 346
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.