Prupe.4G029700_v2.0.a1

Anthocyanidin

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1380339 .. 1385702
5364 bp
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UTR
Exon/CDS
Intron
Prupe.4G029700.1

Sequence Viewer

Length: 1701 bp
ATGGCGGCGTACAGATGGAAGTGCTTCGACGAGAACGAAGACCGTCCTGAAAAGCCTCGAAGCTATGGCGTCACGGAAATGAGAGGCCCCCATTACACCCTCTTAAGCCAAAATGTCCTTCAGGATATTTTTGAGTCCGTGGGGCAGTTCGTTGATGGGTTGAAGTTTTCTGGAGGTTCCCATAGCTTGATGCCCAAATCGTTTATTAAGGAAGTGACTGATGTTGCTCACAAACATGACATATATGTCAGCACTGGTGACTGGGCTGAAAATTTGCTTCGCAAAGGTCCCTCAGCTTTCAAAGAGTATGTGGAGGAATGTAAGAGCTTGGGGTTTGACACAATCGAGTTGAATGTGGGATCTCTTGGAATTCCTGAAGAAACTCTTCTGAGATTTGTGCGCTTAATTAAGAGCGGTGGCTTGAAAGCGAAACCTCAGTTTGCAGTCCAGATTAACAAGTCTGACATTCCCATAGGGGATAGAGCATTTGGAGCCTACGTTGTCCCGAGGCCACGATCATCTGAATTTGTTGAAGATGTTGATCTGCTGATTAGAAGGGCCGAGAGATGCTTAGAAGCAGGGGCTGACATGATAATGATTGATGCTGATGATGTCTGTAAACAAGCTGATTCAATGCGGGCAGACATAATTGCGAAGATCATTGGGCGTCTTGGTGTTGAGAAGACCATGTTTGAAGCATCAAATCCAAGAACATCAGAGTGGTTCGTCAAACAGTATGGTCCAAAGGTGAATCTGTTTGTGGATCACTCCCAAGTGATGGATCTGGAGTGCCTCCGGGGACGAAGCTTAGACAATCAGAAGAAGATCTCTCACCTCACAGCACTACAAGATTTGGGTGAACTAGAAATTTTAGCAGCAGATCTAACTGATGAAGGGAGCTTTGATGCCCCCATAGCAGGTTGTGACCTTGTTTTCCATGTTGCCACACCTGTCAACTTTGCCTCCGAGGACCCTGAGAACGACATGATCAAACCAGCAGTTCAAGGGGTGCTAAACGTTCTGAAAGCATGCGTGAAAGCCAAAACAGTTAAACGCGTTGTTTTGACATCATCAGCAGCTGCAGTGTCGATCAACACACTTAATGGAACAGGTTTGGTCACAGACGAGAACGATTGGAGTGATGTCGAGTTCTTGAGTACTGCAAAGCCACCCACTTGGGGCTATCCTGCCTCCAAGACACTAGCCGAGAAGACAGCTTGGAAATTCGCCGAAGAAAACAACATTGATCTCATCACAGTCATCCCTTCTCTTATGGCTGGTTCTTCTCTCACTCCAGACGTCCCCAGCAGTATCGGCCTAGCCATGTCTTTAATTACAGGAAATGACTTCCTCATAAATCATGCCTTGAAAGGGATGCAACTACTGTCAGGTTCAATCTCCATTACACATGTGGAGGATGTCTGCCGGGCTCATATATTTTTGGCTGAGAAAGAATCTGCTTCTGGTCGGTATATATGCTGCGCTGTCAATACAAGTGTTCCTGAGCTTGCAAAGTTCCTCAACGAAAGATACCCTGAGTACAAAGTCCCCACTGAGTTTGGAGATTTTCCCTCAAAGGCCAAGTTGATCCTCTCTTCGGAGAAGCTTATCAAGGAGGGGTTCAACTTTAAGTACGACATTGAACAAATATATGACCAAGCTGTGGACTACTTTAAGGCTAAGGGGCTGCTGCAGAACTAG

Protein Analysis

567

Amino Acids

62.58

Weight (kDa)

5.17

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 1 cut(s) 1302
Acc36I ACCTGC 1 cut(s) 908
AccB7I CCANNNNNTGG 2 cut(s) 778, 1663
AccBSI CCGCTC 1 cut(s) 414
AccII CGCG 1 cut(s) 1056
AciI CCGC 3 cut(s) 5, 414, 637
AclI AACGTT 1 cut(s) 1017
AclWI GGATC 4 cut(s) 367, 771, 789, 1582
AcsI RAATTY 5 cut(s) 271, 369, 524, 867, 1223
AcuI CTGAAG 2 cut(s) 104, 396
AcyI GRCGYC 3 cut(s) 69, 667, 1299
AfaI GTAC 4 cut(s) 11, 1159, 1541, 1634
AfiI CCNNNNNNNGG 6 cut(s) 778, 917, 1178, 1371, 1597, 1663
AflII CTTAAG 1 cut(s) 103
AflIII ACRYGT 2 cut(s) 1054, 1408
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AlwI GGATC 4 cut(s) 367, 771, 789, 1582
AlwNI CAGNNNCTG 2 cut(s) 584, 1079
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 5 cut(s) 85, 509, 558, 1315, 1578
ApeKI GCWGC 6 cut(s) 875, 1076, 1079, 1479, 1687, 1690
ApoI RAATTY 5 cut(s) 271, 369, 524, 867, 1223
Asp700I GAANNNNTTC 2 cut(s) 23, 384
AspLEI GCGC 2 cut(s) 402, 1484
AspS9I GGNCC 5 cut(s) 86, 287, 558, 740, 970
AsuC2I CCSGG 2 cut(s) 797, 1427
AsuHPI GGTGA 4 cut(s) 269, 760, 824, 869
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 3 cut(s) 287, 740, 970
BanII GRGCYC 1 cut(s) 1432
BbsI GAAGAC 3 cut(s) 45, 689, 1217
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 6 cut(s) 887, 1066, 1088, 1466, 1674, 1677
BccI CCATC 3 cut(s) 9, 149, 772
BclI TGATCA 1 cut(s) 987
BcnI CCSGG 2 cut(s) 797, 1427
BfaI CTAG 4 cut(s) 863, 1202, 1319, 1699
BfmI CTRYAG 2 cut(s) 1080, 1691
BfrI CTTAAG 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 908
BglII AGATCT 2 cut(s) 825, 880
BisI GCNGC 7 cut(s) 6, 876, 1077, 1080, 1480, 1688, 1691
BlsI GCNGC 7 cut(s) 7, 877, 1078, 1081, 1481, 1689, 1692
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 2 cut(s) 797, 1427
Bme18I GGWCC 3 cut(s) 287, 740, 970
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 5 cut(s) 86, 287, 558, 740, 970
BmiI GGNNCC 5 cut(s) 88, 178, 289, 493, 972
BmrFI CCNGG 2 cut(s) 797, 1427
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 6 cut(s) 180, 557, 592, 707, 895, 1365
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 3 cut(s) 45, 689, 1217
BpmI CTGGAG 3 cut(s) 192, 806, 1278
Bpu10I CCTNAGC 3 cut(s) 292, 1503, 1680
BpuEI CTTGAG 1 cut(s) 1174
BpuMI CCSGG 2 cut(s) 797, 1427
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 3 cut(s) 69, 667, 1299
BsaJI CCNNGG 4 cut(s) 138, 506, 796, 966
BsaXI ACNNNNNCTCC 4 cut(s) 483, 513, 947, 977
Bsc4I CCNNNNNNNGG 6 cut(s) 778, 917, 1178, 1371, 1597, 1663
Bse1I ACTGG 2 cut(s) 259, 266
Bse8I GATNNNNATC 1 cut(s) 540
BseDI CCNNGG 4 cut(s) 138, 506, 796, 966
BseGI GGATG 3 cut(s) 1260, 1380, 1423
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 6 cut(s) 778, 917, 1178, 1371, 1597, 1663
BseMII CTCAG 8 cut(s) 306, 380, 449, 966, 1437, 1494, 1527, 1545
BseNI ACTGG 2 cut(s) 259, 266
BseXI GCAGC 6 cut(s) 887, 1066, 1088, 1466, 1674, 1677
BseYI CCCAGC 1 cut(s) 1304
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 5 cut(s) 87, 511, 560, 1317, 1580
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 2 cut(s) 796, 1426
BslFI GGGAC 5 cut(s) 273, 488, 813, 1286, 1532
BslI CCNNNNNNNGG 6 cut(s) 778, 917, 1178, 1371, 1597, 1663
BsmFI GGGAC 5 cut(s) 273, 488, 813, 1286, 1532
BsnI GGCC 5 cut(s) 87, 511, 560, 1317, 1580
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 1432
BspACI CCGC 3 cut(s) 5, 414, 637
BspANI GGCC 5 cut(s) 87, 511, 560, 1317, 1580
BspCNI CTCAG 8 cut(s) 305, 381, 448, 967, 1438, 1495, 1528, 1546
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 5 cut(s) 88, 178, 289, 493, 972
BspMAI CTGCAG 2 cut(s) 1084, 1695
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 4 cut(s) 367, 771, 789, 1582
BspTI CTTAAG 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 259, 266
BssECI CCNNGG 4 cut(s) 138, 506, 796, 966
BssNI GRCGYC 3 cut(s) 69, 667, 1299
Bst4CI ACNGT 5 cut(s) 44, 735, 1048, 1258, 1386
Bst6I CTCTTC 2 cut(s) 390, 1600
BstACI GRCGYC 3 cut(s) 69, 667, 1299
BstAFI CTTAAG 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 639, 1030, 1509
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 1260, 1380, 1423
BstFNI CGCG 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 402, 1484
BstMWI GCNNNNNNNGC 3 cut(s) 491, 914, 1314
BstNSI RCATGY 2 cut(s) 1032, 1412
BstSCI CCNGG 2 cut(s) 795, 1425
BstSFI CTRYAG 2 cut(s) 1080, 1691
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 6 cut(s) 887, 1066, 1088, 1466, 1674, 1677
BstV2I GAAGAC 3 cut(s) 45, 689, 1217
BstX2I RGATCY 4 cut(s) 359, 781, 825, 880
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 4 cut(s) 359, 781, 825, 880
BsuRI GGCC 5 cut(s) 87, 511, 560, 1317, 1580
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 1260, 1380, 1423
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 3 cut(s) 252, 1089, 1551
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 3 cut(s) 639, 1030, 1509
CaiI CAGNNNCTG 2 cut(s) 584, 1079
CfoI GCGC 2 cut(s) 402, 1484
Cfr13I GGNCC 5 cut(s) 86, 287, 558, 740, 970
CseI GACGC 2 cut(s) 58, 656
Csp6I GTAC 4 cut(s) 10, 1158, 1540, 1633
CspCI CAANNNNNGTGG 2 cut(s) 1540, 1575
CviAII CATG 9 cut(s) 236, 589, 688, 938, 985, 1029, 1324, 1361, 1409
CviQI GTAC 4 cut(s) 10, 1158, 1540, 1633
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 390, 1600
EarI CTCTTC 2 cut(s) 390, 1600
Eco24I GRGCYC 1 cut(s) 1432
Eco47I GGWCC 3 cut(s) 287, 740, 970
Eco57I CTGAAG 2 cut(s) 104, 396
Eco88I CYCGRG 1 cut(s) 505
EcoO109I RGGNCCY 3 cut(s) 86, 287, 970
EcoRI GAATTC 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 1432
FaeI CATG 9 cut(s) 239, 592, 691, 941, 988, 1032, 1327, 1364, 1412
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 5 cut(s) 273, 488, 813, 1286, 1532
FatI CATG 9 cut(s) 235, 588, 687, 937, 984, 1028, 1323, 1360, 1408
FauI CCCGC 1 cut(s) 630
FbaI TGATCA 1 cut(s) 987
Fnu4HI GCNGC 7 cut(s) 6, 876, 1077, 1080, 1480, 1688, 1691
FokI GGATG 3 cut(s) 1247, 1387, 1430
FriOI GRGCYC 1 cut(s) 1432
Fsp4HI GCNGC 7 cut(s) 6, 876, 1077, 1080, 1480, 1688, 1691
FspBI CTAG 4 cut(s) 863, 1202, 1319, 1699
GlaI GCGC 2 cut(s) 401, 1483
GluI GCNGC 7 cut(s) 6, 876, 1077, 1080, 1480, 1688, 1691
GsaI CCCAGC 1 cut(s) 1308
GsuI CTGGAG 3 cut(s) 192, 806, 1278
HaeIII GGCC 5 cut(s) 87, 511, 560, 1317, 1580
HapII CCGG 2 cut(s) 796, 1426
HgaI GACGC 2 cut(s) 58, 656
HhaI GCGC 2 cut(s) 402, 1484
Hin1I GRCGYC 3 cut(s) 69, 667, 1299
Hin1II CATG 9 cut(s) 239, 592, 691, 941, 988, 1032, 1327, 1364, 1412
Hin6I GCGC 2 cut(s) 400, 1482
HinP1I GCGC 2 cut(s) 400, 1482
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 2 cut(s) 805, 1604
HinfI GANTC 4 cut(s) 134, 629, 751, 1454
HpaII CCGG 2 cut(s) 796, 1426
HphI GGTGA 4 cut(s) 269, 760, 824, 869
Hpy166II GTNNAC 4 cut(s) 620, 860, 955, 1666
Hpy188I TCNGA 8 cut(s) 390, 463, 523, 718, 819, 967, 1023, 1600
Hpy8I GTNNAC 4 cut(s) 620, 860, 955, 1666
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 128, 549, 887, 1275
HpyCH4III ACNGT 5 cut(s) 44, 735, 1048, 1258, 1386
HpyCH4IV ACGT 3 cut(s) 498, 1017, 1299
HpyCH4V TGCA 6 cut(s) 443, 1082, 1163, 1378, 1511, 1693
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 914, 1314
HpySE526I ACGT 3 cut(s) 498, 1017, 1299
Hsp92I GRCGYC 3 cut(s) 69, 667, 1299
Hsp92II CATG 9 cut(s) 239, 592, 691, 941, 988, 1032, 1327, 1364, 1412
HspAI GCGC 2 cut(s) 400, 1482
Ksp22I TGATCA 1 cut(s) 987
LmnI GCTCC 2 cut(s) 491, 897
Lsp1109I GCAGC 6 cut(s) 887, 1066, 1088, 1466, 1674, 1677
LweI GCATC 6 cut(s) 180, 557, 592, 707, 895, 1365
MaeI CTAG 4 cut(s) 863, 1202, 1319, 1699
MaeII ACGT 3 cut(s) 498, 1017, 1299
MaeIII GTNAC 5 cut(s) 70, 214, 257, 923, 1117
MbiI CCGCTC 1 cut(s) 414
MflI RGATCY 4 cut(s) 359, 781, 825, 880
MhlI GDGCHC 1 cut(s) 1432
MluCI AATT 8 cut(s) 271, 369, 405, 524, 648, 867, 1223, 1332
MluI ACGCGT 1 cut(s) 1054
MlyI GAGTC 1 cut(s) 143
MroXI GAANNNNTTC 2 cut(s) 23, 384
MslI CAYNNNNRTG 4 cut(s) 77, 234, 593, 718
MspA1I CMGCKG 1 cut(s) 1079
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 796, 1426
MspR9I CCNGG 2 cut(s) 797, 1427
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 3 cut(s) 491, 914, 1314
NciI CCSGG 2 cut(s) 797, 1427
NlaIII CATG 9 cut(s) 239, 592, 691, 941, 988, 1032, 1327, 1364, 1412
NlaIV GGNNCC 5 cut(s) 88, 178, 289, 493, 972
NmeAIII GCCGAG 2 cut(s) 586, 1231
NmuCI GTSAC 5 cut(s) 70, 214, 257, 923, 1117
NspI RCATGY 2 cut(s) 1032, 1412
PacI TTAATTAA 1 cut(s) 408
PaeI GCATGC 1 cut(s) 1032
PciI ACATGT 1 cut(s) 1408
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdmI GAANNNNTTC 2 cut(s) 23, 384
PfeI GAWTC 3 cut(s) 629, 751, 1454
PflMI CCANNNNNTGG 2 cut(s) 778, 1663
PkrI GCNGC 7 cut(s) 7, 877, 1078, 1081, 1481, 1689, 1692
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 2 cut(s) 287, 970
PscI ACATGT 1 cut(s) 1408
Psp1406I AACGTT 1 cut(s) 1017
Psp5II RGGWCCY 2 cut(s) 287, 970
PspFI CCCAGC 1 cut(s) 1304
PspN4I GGNNCC 5 cut(s) 88, 178, 289, 493, 972
PspPI GGNCC 5 cut(s) 86, 287, 558, 740, 970
PspPPI RGGWCCY 2 cut(s) 287, 970
PstI CTGCAG 2 cut(s) 1084, 1695
PstNI CAGNNNCTG 2 cut(s) 584, 1079
PsuI RGATCY 4 cut(s) 359, 781, 825, 880
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 4 cut(s) 11, 1159, 1541, 1634
RsaNI GTAC 4 cut(s) 10, 1158, 1540, 1633
RseI CAYNNNNRTG 4 cut(s) 77, 234, 593, 718
SatI GCNGC 7 cut(s) 6, 876, 1077, 1080, 1480, 1688, 1691
Sau96I GGNCC 5 cut(s) 86, 287, 558, 740, 970
ScaI AGTACT 1 cut(s) 1159
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 797, 1427
SduI GDGCHC 1 cut(s) 1432
SfaNI GCATC 6 cut(s) 180, 557, 592, 707, 895, 1365
SfcI CTRYAG 2 cut(s) 1080, 1691
SinI GGWCC 3 cut(s) 287, 740, 970
SmiMI CAYNNNNRTG 4 cut(s) 77, 234, 593, 718
SmlI CTYRAG 2 cut(s) 103, 1153
SmoI CTYRAG 2 cut(s) 103, 1153
SphI GCATGC 1 cut(s) 1032
Sse9I AATT 8 cut(s) 271, 369, 405, 524, 648, 867, 1223, 1332
SsiI CCGC 3 cut(s) 5, 414, 637
SspMI CTAG 4 cut(s) 863, 1202, 1319, 1699
StyD4I CCNGG 2 cut(s) 795, 1425
TaaI ACNGT 5 cut(s) 44, 735, 1048, 1258, 1386
TaiI ACGT 3 cut(s) 501, 1020, 1302
TaqI TCGA 5 cut(s) 27, 58, 345, 1088, 1146
TasI AATT 8 cut(s) 271, 369, 405, 524, 648, 867, 1223, 1332
TatI WGTACW 2 cut(s) 1157, 1539
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 629, 751, 1454
TscAI CASTG 3 cut(s) 259, 1089, 1558
TseFI GTSAC 5 cut(s) 70, 214, 257, 923, 1117
TseI GCWGC 6 cut(s) 875, 1076, 1079, 1479, 1687, 1690
Tsp45I GTSAC 5 cut(s) 70, 214, 257, 923, 1117
TspDTI ATGAA 1 cut(s) 906
TspGWI ACGGA 2 cut(s) 89, 127
TspRI CASTG 3 cut(s) 259, 1089, 1558
Van91I CCANNNNNTGG 2 cut(s) 778, 1663
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 3 cut(s) 287, 740, 970
XapI RAATTY 5 cut(s) 271, 369, 524, 867, 1223
XceI RCATGY 2 cut(s) 1032, 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 1408
XmnI GAANNNNTTC 2 cut(s) 23, 384
XspI CTAG 4 cut(s) 863, 1202, 1319, 1699
ZraI GACGTC 1 cut(s) 1300
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.