Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Forward (+)

3040374 .. 3043555

Gene Structure 3182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG044000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCACCCCCCAACCCATCGTCTCAAACAAGACTGCTTGTGTGATCGGCGGCACCGGCTTCGTGGCGTCTCAGCTGATCAAGCTCTTGCTAGAGAAGGGCTATGTCGTCAAAACCACTGCTAGAGACCCTGATAATCTGAAGAAGATCTCCCACCTCACAGCACTACAAGATTTGGGAAAGCTGACGATTTTTCGTGGTGATTTAACCGATGAAGGGAGCTTCGATGCTGCTATAGCAGGTTCTGATCTTGTTTTCCATGTTGCCACACCAGTCAACTTTGGCTCACCGGACCCGGAGAATGACATGATCAAGCCAGGAGTCCAAGGAGTACTAAATGTTCTGAAATCATGTGTGAAAGCAAAAACAGTTAAGCGAGTTGTTTTAACATCATCAGCAGCTGCAGTAACTGTCAATACTCTTAGTGGCACAGGCTTGATTGCGGACGAAAATGATTGGTCTGATGTTGAGTTCTTGACCACTGCCAAGCCACCTACTTGGGGGTATCCTGTTTCCAAGGTACTAGCCGAGAAGACAGCTTGGAAATTTGCTGAAGAAAACAACATTGATCTCATCACTGTGATCCCTTCTCTCATGGCTGGTGCTTCTCTCACTTCAGACATCCCCAGCAGTATAGGCCTCGCCACATCTTTAATTACAGGTACCAGACCAGAAGCATATGTTGTCCATTGCTTTAACTTGGCTACAGAAGGCCTTGTAGATATAGCTAGAACAAAAATGTATTTGCACCGCGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

253

Amino Acids

26.86

Weight (kDa)

6.09

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	10 - 128	4.3e-10	NmrA-like family
Epimerase	PF01370	14 - 203	2.1e-22	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	15 - 182	1.4e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	15 - 197	1.9e-11	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	17 - 220	2.8e-13	Male sterility protein
NAD_binding_10	PF13460	17 - 136	5.8e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
Acc65I	GGTACC	1 cut(s)	662
AccB1I	GGYRCC	2 cut(s)	53, 662
AccII	CGCG	1 cut(s)	753
AciI	CCGC	3 cut(s)	51, 443, 751
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	3 cut(s)	161, 573, 600
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	333, 522, 664
AfiI	CCNNNNNNNGG	2 cut(s)	216, 500
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	7 cut(s)	76, 85, 184, 222, 401, 539, 728
AluI	AGCT	7 cut(s)	76, 85, 184, 222, 401, 539, 728
Alw26I	GTCTC	3 cut(s)	28, 75, 120
AlwI	GGATC	1 cut(s)	577
AlwNI	CAGNNNCTG	3 cut(s)	245, 401, 410
AoxI	GGCC	3 cut(s)	3, 637, 712
ApeKI	GCWGC	3 cut(s)	230, 398, 401
ApoI	RAATTY	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	53, 662
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	217, 388, 410
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	516
BclI	TGATCA	2 cut(s)	78, 309
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	28, 75, 120
BfaI	CTAG	4 cut(s)	92, 123, 524, 729
BfmI	CTRYAG	3 cut(s)	234, 402, 705
BfuAI	ACCTGC	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	516
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	4 cut(s)	52, 231, 399, 402
BlsI	GCNGC	4 cut(s)	53, 232, 400, 403
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	296, 318
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	55, 294, 664
BmrFI	CCNGG	2 cut(s)	296, 318
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	325, 516
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 500
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	325, 516
BseGI	GGATG	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	216, 500
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	217, 388, 410
BseYI	CCCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	3 cut(s)	5, 639, 714
BshNI	GGYRCC	2 cut(s)	53, 662
BsiSI	CCGG	3 cut(s)	57, 290, 296
BslI	CCNNNNNNNGG	2 cut(s)	216, 500
BsmAI	GTCTC	3 cut(s)	28, 75, 120
BsmBI	CGTCTC	2 cut(s)	28, 75
BsnI	GGCC	3 cut(s)	5, 639, 714
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BspACI	CCGC	3 cut(s)	51, 443, 751
BspANI	GGCC	3 cut(s)	5, 639, 714
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	3 cut(s)	55, 294, 664
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	577
BspT107I	GGYRCC	2 cut(s)	53, 662
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	325, 516
BssMI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	325, 516
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	370, 412, 580
BstACI	GRCGYC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	72, 422
BstF5I	GGATG	1 cut(s)	621
BstFNI	CGCG	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	7 cut(s)	48, 81, 150, 250, 312, 571, 585
BstMAI	GTCTC	3 cut(s)	28, 75, 120
BstMBI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 82, 236, 636
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	294, 316
BstSFI	CTRYAG	3 cut(s)	234, 402, 705
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	217, 388, 410
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	5, 639, 714
BtsCI	GGATG	1 cut(s)	621
BtsI	GCAGTG	2 cut(s)	117, 480
BtsIMutI	CAGTG	3 cut(s)	117, 480, 576
BveI	ACCTGC	1 cut(s)	230
CaiI	CAGNNNCTG	3 cut(s)	245, 401, 410
CfoI	GCGC	1 cut(s)	755
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	332, 521, 663
CviAII	CATG	4 cut(s)	260, 307, 351, 595
CviQI	GTAC	3 cut(s)	332, 521, 663
DdeI	CTNAG	2 cut(s)	72, 422
DpnI	GATC	7 cut(s)	47, 80, 149, 249, 311, 570, 584
DpnII	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	325, 516
Eco147I	AGGCCT	2 cut(s)	639, 714
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	161, 573, 600
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	325, 516
ErhI	CCWWGG	2 cut(s)	325, 516
Esp3I	CGTCTC	2 cut(s)	28, 75
FaeI	CATG	4 cut(s)	263, 310, 354, 598
FatI	CATG	4 cut(s)	259, 306, 350, 594
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	2 cut(s)	78, 309
Fnu4HI	GCNGC	4 cut(s)	52, 231, 399, 402
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	4 cut(s)	52, 231, 399, 402
FspBI	CTAG	4 cut(s)	92, 123, 524, 729
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	4 cut(s)	52, 231, 399, 402
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	5, 639, 714
HapII	CCGG	3 cut(s)	57, 290, 296
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	755
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	263, 310, 354, 598
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	3 cut(s)	57, 290, 296
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	5 cut(s)	141, 247, 345, 463, 619
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	91, 209, 597, 704
HpyCH4III	ACNGT	3 cut(s)	370, 412, 580
HpyCH4V	TGCA	2 cut(s)	404, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 82, 236, 636
HpyF3I	CTNAG	2 cut(s)	72, 422
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	263, 310, 354, 598
HspAI	GCGC	1 cut(s)	753
KpnI	GGTACC	1 cut(s)	666
Ksp22I	TGATCA	2 cut(s)	78, 309
Kzo9I	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	217, 388, 410
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	92, 123, 524, 729
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	7 cut(s)	47, 80, 149, 249, 311, 570, 584
MboI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
MboII	GAAGA	4 cut(s)	154, 157, 544, 566
MflI	RGATCY	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	545, 654
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	2 cut(s)	167, 650
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	206, 372, 386, 653, 696
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	76, 401
MspI	CCGG	3 cut(s)	57, 290, 296
MspR9I	CCNGG	2 cut(s)	296, 318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	57, 82, 236, 636
NciI	CCSGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
NlaIII	CATG	4 cut(s)	263, 310, 354, 598
NlaIV	GGNNCC	3 cut(s)	55, 294, 664
NmeAIII	GCCGAG	1 cut(s)	553
PceI	AGGCCT	2 cut(s)	639, 714
PkrI	GCNGC	4 cut(s)	53, 232, 400, 403
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	55, 294, 664
PspPI	GGNCC	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	3 cut(s)	245, 401, 410
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	76, 401
RsaI	GTAC	3 cut(s)	333, 522, 664
RsaNI	GTAC	3 cut(s)	332, 521, 663
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	5 cut(s)	206, 372, 386, 653, 696
SatI	GCNGC	4 cut(s)	52, 231, 399, 402
Sau3AI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	296, 318
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	3 cut(s)	234, 402, 705
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	545, 654
SseBI	AGGCCT	2 cut(s)	639, 714
SsiI	CCGC	3 cut(s)	51, 443, 751
SspMI	CTAG	4 cut(s)	92, 123, 524, 729
StuI	AGGCCT	2 cut(s)	639, 714
StyD4I	CCNGG	2 cut(s)	294, 316
StyI	CCWWGG	2 cut(s)	325, 516
TaaI	ACNGT	3 cut(s)	370, 412, 580
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	545, 654
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	5 cut(s)	206, 372, 386, 653, 696
Tru9I	TTAA	5 cut(s)	206, 372, 386, 653, 696
TscAI	CASTG	3 cut(s)	124, 487, 583
TseI	GCWGC	3 cut(s)	230, 398, 401
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	124, 487, 583
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	545
XspI	CTAG	4 cut(s)	92, 123, 524, 729
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.