Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Reverse (-)

27626403 .. 27628910

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26230.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCACCCAACAACCCATCTCAAAGAAGACGGCTTGCGTCGTCGGCGGAACCGGTTTCGTGGCGTCTCTGCTGGTCAAGCTGCTGCTCCAGAAGGGCTACGCCGTCAGAACCACCGTCAGAGACCCTGACAACCATAAGAAGGTCTCCCACCTCACAGCACTACAAGAGTTGGGTGAGCTAGAGATTTTAGCAGGAGATCTAACTGATGAAGGGAGCTTCGATGCCCCAATAGCAGGCTGTGATCTTGTTTTCCATGTTGCAACCCCTGTCAACTTTGCCTCACAGGACCCAGAGAATGATATGATCAAACCAGCAATCCAAGGGGTACTAAATGTTCTGAAGTCGTGCGTGAAAGCCAAAACAGTTAAGCGCGTTGTTTTGACATCGTCAGCTGCTACAGTTTCGATCAATACACTTGACGGAACAGGTTTGGTCGTGGATGAAAAGGATTGGAGTGATTTGGAGTTCTTGACTACTGTCAAGCCACCCACTTGGTTGCAGGGGTACCCTGCCTCCAAGACACTAGCTGAGAAGACAGCTTGGAAATTTGCCGAAGAAAACAACATTGATCTAATCACTGTGATCCCTTCTCTTATGGCCGGTCCTTCTCTCACTCCAGACGTTCCCAGCAGTATCGGCCTTGCCATGGCTTTAATCACAGGAGATGATTTCCTCATAAATATGGCCCTGAAAGGTATGCAAATGCTATCAGGTTCGATATCCATTACACATGTGGAGGATGTCTGCCGGGCTCATATATTTTTGGCTGAGAAAGAATCTGCATCTGGTCGGTACATTTGCTGTGCTGCCAACGCTGGCGTTCCCGAGCTTGCTAAGTTCCTCAACAAAAGATACCCCCAGTACAAAGTCCCCACTGAGTTTGGAGATTTTCCGTCCAAGGCCAAACTGATCGATCTCTTCAGAGAAGCTTATCAAGGAGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

317

Amino Acids

33.97

Weight (kDa)

5.61

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	507
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	2 cut(s)	3, 600
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	2 cut(s)	362, 907
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	4 cut(s)	330, 509, 797, 866
AfiI	CCNNNNNNNGG	3 cut(s)	142, 236, 649
AflIII	ACRYGT	1 cut(s)	733
AgeI	ACCGGT	1 cut(s)	53
AluBI	AGCT	8 cut(s)	82, 181, 219, 395, 530, 542, 832, 932
AluI	AGCT	8 cut(s)	82, 181, 219, 395, 530, 542, 832, 932
Alw26I	GTCTC	3 cut(s)	72, 117, 151
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	5 cut(s)	3, 600, 640, 687, 903
ApeKI	GCWGC	4 cut(s)	82, 85, 395, 809
ApoI	RAATTY	1 cut(s)	548
AsiGI	ACCGGT	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	3 cut(s)	289, 605, 688
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	289, 605
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	757
BbsI	GAAGAC	2 cut(s)	35, 542
BbvI	GCAGC	4 cut(s)	69, 72, 382, 796
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	48, 89
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	72, 117, 151
BfaI	CTAG	2 cut(s)	182, 527
BfmI	CTRYAG	1 cut(s)	399
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	83, 86, 396, 810
BlsI	GCNGC	4 cut(s)	84, 87, 397, 811
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	2 cut(s)	289, 605
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	289, 605, 688
BmiI	GGNNCC	3 cut(s)	52, 291, 509
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	856
BmsI	GCATC	2 cut(s)	214, 794
BmuI	ACTGGG	1 cut(s)	856
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	2 cut(s)	35, 542
BpmI	CTGGAG	2 cut(s)	74, 603
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	2 cut(s)	117, 151
BsaJI	CCNNGG	3 cut(s)	322, 648, 900
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 236, 649
Bse118I	RCCGGY	2 cut(s)	53, 602
Bse1I	ACTGG	1 cut(s)	862
BseCI	ATCGAT	1 cut(s)	915
BseDI	CCNNGG	3 cut(s)	322, 648, 900
BseGI	GGATG	2 cut(s)	448, 748
BseLI	CCNNNNNNNGG	3 cut(s)	142, 236, 649
BseMII	CTCAG	3 cut(s)	522, 762, 870
BseNI	ACTGG	1 cut(s)	862
BseXI	GCAGC	4 cut(s)	69, 72, 382, 796
BseYI	CCCAGC	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	5 cut(s)	5, 602, 642, 689, 905
BshNI	GGYRCC	1 cut(s)	507
BshTI	ACCGGT	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	915
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	54, 603, 751
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	3 cut(s)	142, 236, 649
BsmAI	GTCTC	3 cut(s)	72, 117, 151
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	5 cut(s)	5, 602, 642, 689, 905
Bso31I	GGTCTC	2 cut(s)	117, 151
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	5 cut(s)	5, 602, 642, 689, 905
BspCNI	CTCAG	3 cut(s)	523, 763, 871
BspDI	ATCGAT	1 cut(s)	915
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	52, 291, 509
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	507
BspTNI	GGTCTC	2 cut(s)	117, 151
BsrFI	RCCGGY	2 cut(s)	53, 602
BsrI	ACTGG	1 cut(s)	862
BssAI	RCCGGY	2 cut(s)	53, 602
BssECI	CCNNGG	3 cut(s)	322, 648, 900
BssMI	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	3 cut(s)	322, 648, 900
Bst4CI	ACNGT	5 cut(s)	118, 367, 403, 481, 583
Bst6I	CTCTTC	1 cut(s)	926
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	37, 238, 820, 834
BstDEI	CTNAG	4 cut(s)	531, 771, 837, 879
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	448, 748
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	8 cut(s)	202, 247, 309, 411, 574, 588, 915, 919
BstMAI	GTCTC	3 cut(s)	72, 117, 151
BstMBI	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 79, 233, 639, 815
BstNSI	RCATGY	1 cut(s)	737
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	69, 72, 382, 796
BstV2I	GAAGAC	2 cut(s)	35, 542
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	915
BsuRI	GGCC	5 cut(s)	5, 602, 642, 689, 905
BsuTUI	ATCGAT	1 cut(s)	915
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	448, 748
BtsIMutI	CAGTG	2 cut(s)	579, 876
Cac8I	GCNNGC	4 cut(s)	37, 238, 820, 834
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	2 cut(s)	53, 602
Cfr13I	GGNCC	3 cut(s)	289, 605, 688
ClaI	ATCGAT	1 cut(s)	915
CseI	GACGC	2 cut(s)	28, 54
Csp6I	GTAC	4 cut(s)	329, 508, 796, 865
CspAI	ACCGGT	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	3 cut(s)	257, 649, 734
CviQI	GTAC	4 cut(s)	329, 508, 796, 865
DdeI	CTNAG	4 cut(s)	531, 771, 837, 879
DpnI	GATC	8 cut(s)	201, 246, 308, 410, 573, 587, 914, 918
DpnII	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
EaeI	YGGCCR	2 cut(s)	3, 600
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	3 cut(s)	322, 648, 900
Eco24I	GRGCYC	1 cut(s)	757
Eco31I	GGTCTC	2 cut(s)	117, 151
Eco32I	GATATC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	289, 605
Eco57I	CTGAAG	2 cut(s)	362, 907
Eco88I	CYCGRG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	723
EcoT14I	CCWWGG	3 cut(s)	322, 648, 900
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	3 cut(s)	322, 648, 900
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	260, 652, 737
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	3 cut(s)	256, 648, 733
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	83, 86, 396, 810
FokI	GGATG	2 cut(s)	455, 755
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	4 cut(s)	83, 86, 396, 810
FspBI	CTAG	2 cut(s)	182, 527
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	4 cut(s)	83, 86, 396, 810
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	2 cut(s)	74, 603
HaeIII	GGCC	5 cut(s)	5, 602, 642, 689, 905
HapII	CCGG	3 cut(s)	54, 603, 751
HgaI	GACGC	2 cut(s)	28, 54
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	260, 652, 737
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	930
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	3 cut(s)	54, 603, 751
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	110, 122, 342, 926
Hpy188III	TCNNGA	4 cut(s)	91, 472, 620, 827
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	5 cut(s)	88, 136, 206, 600, 618
HpyCH4III	ACNGT	5 cut(s)	118, 367, 403, 481, 583
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	263, 502, 703, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 79, 233, 639, 815
HpyF3I	CTNAG	4 cut(s)	531, 771, 837, 879
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	260, 652, 737
HspAI	GCGC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
LmnI	GCTCC	2 cut(s)	93, 216
Lsp1109I	GCAGC	4 cut(s)	69, 72, 382, 796
LweI	GCATC	2 cut(s)	214, 794
MaeI	CTAG	2 cut(s)	182, 527
MaeII	ACGT	1 cut(s)	624
MalI	GATC	8 cut(s)	201, 246, 308, 410, 573, 587, 914, 918
MboI	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
MboII	GAAGA	4 cut(s)	40, 547, 569, 913
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	164, 292, 526, 686, 733, 854, 935
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	369, 656
MslI	CAYNNNNRTG	1 cut(s)	683
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	54, 603, 751
MspR9I	CCNGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	5 cut(s)	45, 79, 233, 639, 815
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
NlaIII	CATG	3 cut(s)	260, 652, 737
NlaIV	GGNNCC	3 cut(s)	52, 291, 509
NspI	RCATGY	1 cut(s)	737
PciI	ACATGT	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	779
PflFI	GACNNNGTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	84, 87, 397, 811
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	733
PshAI	GACNNNNGTC	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	629
PspN4I	GGNNCC	3 cut(s)	52, 291, 509
PspPI	GGNCC	3 cut(s)	289, 605, 688
PspPPI	RGGWCCY	1 cut(s)	289
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	4 cut(s)	330, 509, 797, 866
RsaNI	GTAC	4 cut(s)	329, 508, 796, 865
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	369, 656
SatI	GCNGC	4 cut(s)	83, 86, 396, 810
Sau3AI	GATC	8 cut(s)	199, 244, 306, 408, 571, 585, 912, 916
Sau96I	GGNCC	3 cut(s)	289, 605, 688
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	214, 794
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	289, 605
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	1 cut(s)	548
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	182, 527
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	3 cut(s)	322, 648, 900
TaaI	ACNGT	5 cut(s)	118, 367, 403, 481, 583
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	222, 407, 719, 915
TasI	AATT	1 cut(s)	548
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	2 cut(s)	369, 656
Tru9I	TTAA	2 cut(s)	369, 656
TscAI	CASTG	2 cut(s)	586, 883
TseI	GCWGC	4 cut(s)	82, 85, 395, 809
TspDTI	ATGAA	2 cut(s)	225, 459
TspGWI	ACGGA	2 cut(s)	438, 885
TspRI	CASTG	2 cut(s)	586, 883
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	289, 605
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XspI	CTAG	2 cut(s)	182, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.