Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462841.1

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1125

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggccaccccccaacccatcgtctcaaacaagactgcttgtgtgatcggcggcaccggcttcgtggcgtctcagctgatcaagctcttgctagagaagggctatgtcgtcaaaaccactgctagagaccctgataatctgaagaagatctcccaactcacagcactacaagagttgggaaagctgacgatttttcgtggtgatttaaccgatgaagggagcttcgatgctgctatagcaggttctgatcttgttttccatgttgccacaccagtcaactttggctcaccggacccggagaatgacatgatcaagccaggagtccaaggagtactaaatgttctgaaatcatgtgtgaaagcaaaaacagttaagcgagttgttttaacatcatcagcagctgcagtaactgtcaatactcttagtggcacaggcttgattgcggacgaaaatgattggtctgatgttgagttcttgaccactgccaagccacctacttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

167

Amino Acids

17.63

Weight (kDa)

5.8

Isoelectric Point (pI)

20.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 443
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	76, 85, 184, 222, 401
AluI	AGCT	5 cut(s)	76, 85, 184, 222, 401
Alw26I	GTCTC	3 cut(s)	28, 75, 120
AlwNI	CAGNNNCTG	3 cut(s)	245, 401, 410
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	230, 398, 401
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	217, 388, 410
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	2 cut(s)	78, 309
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	28, 75, 120
BfaI	CTAG	2 cut(s)	92, 123
BfmI	CTRYAG	2 cut(s)	234, 402
BfuAI	ACCTGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	4 cut(s)	52, 231, 399, 402
BlsI	GCNGC	4 cut(s)	53, 232, 400, 403
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	296, 318
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	55, 294
BmrFI	CCNGG	2 cut(s)	296, 318
BmsI	GCATC	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	217, 388, 410
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	57, 290, 296
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	3 cut(s)	28, 75, 120
BsmBI	CGTCTC	2 cut(s)	28, 75
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	45, 78, 147, 247, 309
BspACI	CCGC	2 cut(s)	51, 443
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	55, 294
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	5 cut(s)	45, 78, 147, 247, 309
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	370, 412
BstACI	GRCGYC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	72, 422
BstKTI	GATC	5 cut(s)	48, 81, 150, 250, 312
BstMAI	GTCTC	3 cut(s)	28, 75, 120
BstMBI	GATC	5 cut(s)	45, 78, 147, 247, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 82, 236
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	294, 316
BstSFI	CTRYAG	2 cut(s)	234, 402
BstV1I	GCAGC	3 cut(s)	217, 388, 410
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	2 cut(s)	117, 480
BtsIMutI	CAGTG	2 cut(s)	117, 480
BveI	ACCTGC	1 cut(s)	230
CaiI	CAGNNNCTG	3 cut(s)	245, 401, 410
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	3 cut(s)	260, 307, 351
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	72, 422
DpnI	GATC	5 cut(s)	47, 80, 149, 249, 311
DpnII	GATC	5 cut(s)	45, 78, 147, 247, 309
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	2 cut(s)	28, 75
FaeI	CATG	3 cut(s)	263, 310, 354
FaiI	YATR	5 cut(s)	105, 236, 261, 308, 352
FatI	CATG	3 cut(s)	259, 306, 350
FbaI	TGATCA	2 cut(s)	78, 309
Fnu4HI	GCNGC	4 cut(s)	52, 231, 399, 402
Fsp4HI	GCNGC	4 cut(s)	52, 231, 399, 402
FspBI	CTAG	2 cut(s)	92, 123
GluI	GCNGC	4 cut(s)	52, 231, 399, 402
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	57, 290, 296
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	263, 310, 354
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	3 cut(s)	57, 290, 296
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	141, 247, 345, 463
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	91, 209
HpyCH4III	ACNGT	2 cut(s)	370, 412
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 82, 236
HpyF3I	CTNAG	2 cut(s)	72, 422
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	263, 310, 354
Ksp22I	TGATCA	2 cut(s)	78, 309
Kzo9I	GATC	5 cut(s)	45, 78, 147, 247, 309
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	9 cut(s)	70, 144, 225, 285, 303, 303, 309, 330, 417
Lsp1109I	GCAGC	3 cut(s)	217, 388, 410
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	92, 123
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	47, 80, 149, 249, 311
MboI	GATC	5 cut(s)	45, 78, 147, 247, 309
MboII	GAAGA	2 cut(s)	154, 157
MflI	RGATCY	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	206, 372, 386
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	76, 401
MspI	CCGG	3 cut(s)	57, 290, 296
MspR9I	CCNGG	2 cut(s)	296, 318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	57, 82, 236
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	5 cut(s)	45, 78, 147, 247, 309
NlaIII	CATG	3 cut(s)	263, 310, 354
NlaIV	GGNNCC	2 cut(s)	55, 294
PkrI	GCNGC	4 cut(s)	53, 232, 400, 403
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	55, 294
PspPI	GGNCC	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	3 cut(s)	245, 401, 410
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	76, 401
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	206, 372, 386
SatI	GCNGC	4 cut(s)	52, 231, 399, 402
Sau3AI	GATC	5 cut(s)	45, 78, 147, 247, 309
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	296, 318
SetI	ASST	7 cut(s)	78, 87, 186, 224, 244, 403, 496
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	2 cut(s)	234, 402
SinI	GGWCC	1 cut(s)	292
SsiI	CCGC	2 cut(s)	51, 443
SspMI	CTAG	2 cut(s)	92, 123
StyD4I	CCNGG	2 cut(s)	294, 316
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	370, 412
TaqI	TCGA	1 cut(s)	225
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	206, 372, 386
Tru9I	TTAA	3 cut(s)	206, 372, 386
TscAI	CASTG	2 cut(s)	124, 487
TseI	GCWGC	3 cut(s)	230, 398, 401
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	124, 487
VpaK11BI	GGWCC	1 cut(s)	292
XspI	CTAG	2 cut(s)	92, 123
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.