Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009128.1

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Forward (+)

12096 .. 13986

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009128.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggccaccccccaacccatcgtctcaaacaagactgcttgtgtgatcggcggcaccggcttcgtggcgtctcagctgatcaagctcttgctagagaagggctatgtcgtcaaaaccactgctagagaccctgataatctgaagaagatctcccaactcacagcactacaagagttgggaaagctgacgatttttcgtggtgatttaaccgatgaagggagcttcgatgctgctatagcaggttctgatcttgttttccatgttgccacaccagtcaactttggctcaccggacccggagaatgacatgatcaagccaggagtccaaggagtactaaatgttctgaaatcatgtgtgaaagcaaaaacagttaagcgagttgttttaacatcatcagcagctgcagtaactgtcaatactcttagtggcacaggcttgattgcggacgaaaatgattggtctgatgttgagttcttgaccactgccaagccacctacttggggatatcctgtttccaaggtactagctgagaagacagcttggaaatttgctgaagaaaacaacattgatctcatcactgtgatcccttctctcatggctggtgcttctctcacttcagacatccccagcagtataggcctcgccacatctttaattacaggaaatgaattccttataaatggcttgaaaggcatgcaaatgctatcaggttccatatccattacacatgtggaggatgtctgccgagctcatatctttttggcagagaaagaatctgcttccggtcggtacatatgctgtgctgaaaatagcagtgttcccgaggttgcaaagttcctcagcaaaagatatcccggctacaaagtcccgactgagtttggagattttccatccaaggccaagaccatactctcttcggaaaagctaaagaaggaggggttcactttcaagtatgggattgaagacatttatgaccaagctgtggagtacttgaaagttaagggggtgctgcagagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

339

Amino Acids

36.37

Weight (kDa)

6.03

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	982
AciI	CCGC	2 cut(s)	51, 443
AclWI	GGATC	1 cut(s)	577
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	545, 668
AcuI	CTGAAG	3 cut(s)	161, 573, 600
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	4 cut(s)	333, 522, 791, 989
AfiI	CCNNNNNNNGG	3 cut(s)	216, 500, 982
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	688, 949, 962, 994
AjnI	CCWGG	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	3 cut(s)	28, 75, 120
AlwI	GGATC	1 cut(s)	577
AlwNI	CAGNNNCTG	3 cut(s)	245, 401, 410
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	3 cut(s)	3, 637, 897
ApeKI	GCWGC	4 cut(s)	230, 398, 401, 1009
ApoI	RAATTY	2 cut(s)	545, 668
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	296, 855
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	2 cut(s)	539, 969
Bbv12I	GWGCWC	1 cut(s)	751
BbvCI	CCTCAGC	1 cut(s)	839
BbvI	GCAGC	4 cut(s)	217, 388, 410, 996
BccI	CCATC	2 cut(s)	26, 898
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	2 cut(s)	78, 309
BcnI	CCSGG	2 cut(s)	296, 855
BcoDI	GTCTC	3 cut(s)	28, 75, 120
BfaI	CTAG	4 cut(s)	92, 123, 524, 1018
BfmI	CTRYAG	3 cut(s)	234, 402, 1010
BfuAI	ACCTGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	5 cut(s)	52, 231, 399, 402, 1010
BlsI	GCNGC	5 cut(s)	53, 232, 400, 403, 1011
BmcAI	AGTACT	2 cut(s)	333, 989
Bme1390I	CCNGG	3 cut(s)	296, 318, 855
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	55, 294, 712
BmrFI	CCNGG	3 cut(s)	296, 318, 855
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	2 cut(s)	539, 969
Bpu10I	CCTNAGC	1 cut(s)	839
BpuMI	CCSGG	2 cut(s)	296, 855
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	325, 516, 822, 894
BsaWI	WCCGGW	2 cut(s)	289, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 500, 982
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	325, 516, 822, 894
BseGI	GGATG	3 cut(s)	621, 742, 890
BseLI	CCNNNNNNNGG	3 cut(s)	216, 500, 982
BseMII	CTCAG	4 cut(s)	86, 519, 853, 864
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	4 cut(s)	217, 388, 410, 996
BseYI	CCCAGC	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	3 cut(s)	5, 639, 899
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	5 cut(s)	57, 290, 296, 783, 855
BslFI	GGGAC	1 cut(s)	851
BslI	CCNNNNNNNGG	3 cut(s)	216, 500, 982
BsmAI	GTCTC	3 cut(s)	28, 75, 120
BsmBI	CGTCTC	2 cut(s)	28, 75
BsmFI	GGGAC	1 cut(s)	851
BsnI	GGCC	3 cut(s)	5, 639, 899
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BspACI	CCGC	2 cut(s)	51, 443
BspANI	GGCC	3 cut(s)	5, 639, 899
BspCNI	CTCAG	4 cut(s)	85, 520, 852, 865
BspLI	GGNNCC	3 cut(s)	55, 294, 712
BspMAI	CTGCAG	2 cut(s)	406, 1014
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	325, 516, 822, 894
BssMI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	3 cut(s)	325, 516, 894
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	370, 412, 580
Bst6I	CTCTTC	1 cut(s)	919
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	5 cut(s)	72, 422, 528, 839, 873
BstF5I	GGATG	3 cut(s)	621, 742, 890
BstKTI	GATC	7 cut(s)	48, 81, 150, 250, 312, 571, 585
BstMAI	GTCTC	3 cut(s)	28, 75, 120
BstMBI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 82, 236, 636, 690
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	697, 731
BstSCI	CCNGG	3 cut(s)	294, 316, 853
BstSFI	CTRYAG	3 cut(s)	234, 402, 1010
BstV1I	GCAGC	4 cut(s)	217, 388, 410, 996
BstV2I	GAAGAC	2 cut(s)	539, 969
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	5, 639, 899
BtsCI	GGATG	3 cut(s)	621, 742, 890
BtsI	GCAGTG	3 cut(s)	117, 480, 820
BtsIMutI	CAGTG	4 cut(s)	117, 480, 576, 820
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	695
CaiI	CAGNNNCTG	3 cut(s)	245, 401, 410
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	332, 521, 790, 988
CviAII	CATG	6 cut(s)	260, 307, 351, 595, 694, 728
CviQI	GTAC	4 cut(s)	332, 521, 790, 988
DdeI	CTNAG	5 cut(s)	72, 422, 528, 839, 873
DpnI	GATC	7 cut(s)	47, 80, 149, 249, 311, 570, 584
DpnII	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	919
EarI	CTCTTC	1 cut(s)	919
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	3 cut(s)	325, 516, 894
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	751
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	2 cut(s)	506, 851
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	749
Eco57I	CTGAAG	3 cut(s)	161, 573, 600
Eco88I	CYCGRG	1 cut(s)	821
EcoICRI	GAGCTC	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	2 cut(s)	506, 851
EcoT14I	CCWWGG	3 cut(s)	325, 516, 894
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	3 cut(s)	325, 516, 894
Esp3I	CGTCTC	2 cut(s)	28, 75
FaeI	CATG	6 cut(s)	263, 310, 354, 598, 697, 731
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	6 cut(s)	259, 306, 350, 594, 693, 727
FauNDI	CATATG	1 cut(s)	794
FbaI	TGATCA	2 cut(s)	78, 309
Fnu4HI	GCNGC	5 cut(s)	52, 231, 399, 402, 1010
FokI	GGATG	3 cut(s)	608, 749, 877
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	5 cut(s)	52, 231, 399, 402, 1010
FspBI	CTAG	4 cut(s)	92, 123, 524, 1018
GluI	GCNGC	5 cut(s)	52, 231, 399, 402, 1010
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	5, 639, 899
HapII	CCGG	5 cut(s)	57, 290, 296, 783, 855
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	263, 310, 354, 598, 697, 731
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	321, 773
HpaII	CCGG	5 cut(s)	57, 290, 296, 783, 855
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	2 cut(s)	277, 942
Hpy188I	TCNGA	6 cut(s)	141, 247, 345, 463, 619, 919
Hpy188III	TCNNGA	3 cut(s)	475, 821, 868
Hpy8I	GTNNAC	2 cut(s)	277, 942
HpyAV	CCTTC	4 cut(s)	91, 209, 597, 925
HpyCH4III	ACNGT	3 cut(s)	370, 412, 580
HpyCH4V	TGCA	4 cut(s)	404, 697, 830, 1012
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 82, 236, 636, 690
HpyF3I	CTNAG	5 cut(s)	72, 422, 528, 839, 873
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	6 cut(s)	263, 310, 354, 598, 697, 731
Ksp22I	TGATCA	2 cut(s)	78, 309
Kzo9I	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	4 cut(s)	217, 388, 410, 996
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	92, 123, 524, 1018
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	7 cut(s)	47, 80, 149, 249, 311, 570, 584
MboI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
MboII	GAAGA	6 cut(s)	154, 157, 544, 566, 906, 974
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	545, 654, 668
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	650, 727, 817, 848, 928
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	206, 372, 386, 653, 999
MslI	CAYNNNNRTG	2 cut(s)	578, 698
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	76, 401
MspI	CCGG	5 cut(s)	57, 290, 296, 783, 855
MspR9I	CCNGG	3 cut(s)	296, 318, 855
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	5 cut(s)	57, 82, 236, 636, 690
NciI	CCSGG	2 cut(s)	296, 855
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
NlaIII	CATG	6 cut(s)	263, 310, 354, 598, 697, 731
NlaIV	GGNNCC	3 cut(s)	55, 294, 712
NmeAIII	GCCGAG	1 cut(s)	770
NspI	RCATGY	2 cut(s)	697, 731
PaeI	GCATGC	1 cut(s)	697
PceI	AGGCCT	1 cut(s)	639
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	773
PflMI	CCANNNNNTGG	1 cut(s)	982
PkrI	GCNGC	5 cut(s)	53, 232, 400, 403, 1011
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	727
PsiI	TTATAA	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	55, 294, 712
PspPI	GGNCC	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	2 cut(s)	406, 1014
PstNI	CAGNNNCTG	3 cut(s)	245, 401, 410
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	2 cut(s)	76, 401
RsaI	GTAC	4 cut(s)	333, 522, 791, 989
RsaNI	GTAC	4 cut(s)	332, 521, 790, 988
RseI	CAYNNNNRTG	2 cut(s)	578, 698
SacI	GAGCTC	1 cut(s)	751
SaqAI	TTAA	5 cut(s)	206, 372, 386, 653, 999
SatI	GCNGC	5 cut(s)	52, 231, 399, 402, 1010
Sau3AI	GATC	7 cut(s)	45, 78, 147, 247, 309, 568, 582
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	2 cut(s)	333, 989
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	3 cut(s)	296, 318, 855
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	3 cut(s)	234, 402, 1010
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	578, 698
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	3 cut(s)	545, 654, 668
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	51, 443
SspMI	CTAG	4 cut(s)	92, 123, 524, 1018
SstI	GAGCTC	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	294, 316, 853
StyI	CCWWGG	3 cut(s)	325, 516, 894
TaaI	ACNGT	3 cut(s)	370, 412, 580
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	545, 654, 668
TatI	WGTACW	2 cut(s)	331, 987
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	5 cut(s)	206, 372, 386, 653, 999
Tru9I	TTAA	5 cut(s)	206, 372, 386, 653, 999
TscAI	CASTG	4 cut(s)	124, 487, 583, 820
TseI	GCWGC	4 cut(s)	230, 398, 401, 1009
TspDTI	ATGAA	2 cut(s)	228, 681
TspRI	CASTG	4 cut(s)	124, 487, 583, 820
Van91I	CCANNNNNTGG	1 cut(s)	982
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	2 cut(s)	545, 668
XceI	RCATGY	2 cut(s)	697, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XspI	CTAG	4 cut(s)	92, 123, 524, 1018
ZrmI	AGTACT	2 cut(s)	333, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.