Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010753

Physical Location & Seq

Genomic Coordinates Forward (+)

2903128 .. 2903802

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTGGTGCTTCTCTCACTCCAGACATCCCCAGCAGTATAGGCCTCGCCACATCTTTAATTACAGGAAATGAATTCCTTATAAATGGCTTGAAAGGCATGCAAATGCTATCAGGTTCCATATCCATTACACATGTGGAGGATGTCTGCGGAGCTCATATCTTTTTGGCAGAGAAAGAATCTGCTTCCGGTCGGTACATATGCTGTGCTGAAAATAGCAGTGTTCCTGAGGTTGCAAAGTTCCTCAGCAAAAGATATCCCGGCTACAAAGTCCCGACTGAGTTTGGAGATTTTCCATCCAAGGCCAAGACCATACTCTCTTCGGAAAAGCTTAAGAAGGAGGGGTTCACTTTCAAGTATGGGATTGAAGACATATATGACCAAGCTGTGGAGTACTTGAAAGTTAAGGGGGAGCTGCAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009964 GO:0016491 GO:0016627 GO:0016628 GO:0019222 GO:0033729 GO:0048519 GO:0050789 GO:0055114 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko00941 ko01110 map00941 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

141

Amino Acids

15.27

Weight (kDa)

5.71

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61720
fragaria_vesca	FvH4_3g02980
malus_domestica	MD05G1335600.v1.1 MD10G1311100.v1.1
prunus_persica	Prupe.4G029700_v2.0.a1
pyrus_communis	pycom05g30700 pycom10g26230
rosa_chinensis	RchiOBHm_Chr5g0004611
rosa_multiflora	Rmu_co8004590.1_g000001 Rmu_co8462841.1_g000001 Rmu_sc0003758.1_g000017 Rmu_sc0009128.1_g000003
rosa_roxburghii	Rroxscaffold_1G00070930
rosa_rugosa	Rorug04G0412500
rosa_samantha	Rh5AG040600 Rh5BG040200 Rh5BG040300 Rh5CG044000 Rh5DG039900
rosa_wichuraiana	Rw5G003900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	388
AciI	CCGC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	2 cut(s)	197, 395
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	94, 355, 368, 400
AluBI	AGCT	5 cut(s)	155, 331, 386, 415, 423
AluI	AGCT	5 cut(s)	155, 331, 386, 415, 423
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	43, 303
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	424
BfmI	CTRYAG	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	332
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	6
Bpu10I	CCTNAGC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	27, 148, 296
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	3 cut(s)	219, 259, 270
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	45, 305
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	189, 261
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	45, 305
Bsp1286I	GDGCHC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	45, 305
BspCNI	CTCAG	3 cut(s)	220, 258, 271
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	325
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	228, 245, 279
BstF5I	GGATG	3 cut(s)	27, 148, 296
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 96
BstNSI	RCATGY	2 cut(s)	103, 137
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	45, 305
BtsCI	GGATG	3 cut(s)	27, 148, 296
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	196, 394
CviAII	CATG	2 cut(s)	100, 134
CviQI	GTAC	2 cut(s)	196, 394
DdeI	CTNAG	3 cut(s)	228, 245, 279
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	103, 137
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	99, 133
FauNDI	CATATG	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	3 cut(s)	14, 155, 283
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	424
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	45, 305
HapII	CCGG	2 cut(s)	189, 261
Hin1II	CATG	2 cut(s)	103, 137
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	189, 261
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	3 cut(s)	23, 227, 274
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	103, 236, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 96
HpyF3I	CTNAG	3 cut(s)	228, 245, 279
Hsp92II	CATG	2 cut(s)	103, 137
LmnI	GCTCC	2 cut(s)	152, 412
LpnPI	CCDG	7 cut(s)	36, 46, 51, 99, 202, 240, 274
Lsp1109I	GCAGC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	424
MboII	GAAGA	2 cut(s)	312, 380
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	60, 74
MnlI	CCTC	5 cut(s)	56, 133, 223, 254, 334
MseI	TTAA	3 cut(s)	59, 333, 405
MslI	CAYNNNNRTG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	2 cut(s)	189, 261
MspR9I	CCNGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	42, 96
NciI	CCSGG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	200
NlaIII	CATG	2 cut(s)	103, 137
NlaIV	GGNNCC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	103, 137
PaeI	GCATGC	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	45
PciI	ACATGT	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	417
PscI	ACATGT	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	197, 395
RsaNI	GTAC	2 cut(s)	196, 394
RseI	CAYNNNNRTG	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	59, 333, 405
SatI	GCNGC	1 cut(s)	416
ScaI	AGTACT	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	7 cut(s)	118, 157, 234, 333, 388, 417, 425
SfcI	CTRYAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	60, 74
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	157
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	300
TasI	AATT	2 cut(s)	60, 74
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	59, 333, 405
Tru9I	TTAA	3 cut(s)	59, 333, 405
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	103, 137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	424
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.