Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008398

Physical Location & Seq

Genomic Coordinates Reverse (-)

3151373 .. 3155273

Gene Structure 3901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCGGACCTAAAACCAAGGCGGCTGAGGGGCCACAAGGCCACTGCCACGTGTTGCATCGCCTCTGTTGCTACCCCTGGCCTCGTCGCCACTGCCGGAGAGGATGGCTGCGTTTGCTGGTTTGATATGCGATGCAAAGATGTGATAGATATTATGGAGGTTGGAGAGGAACCCGTTTCATCATTATGTTTCAGGCCAGGAAATGAAAATATGATCTTTGTTTCATCTGAGAAGCAAGTCAAGAGCTTTGATGTGCGTCTGGGGAGTTCTTGCTCATGGAAGCCATTGGAAAGTTATGATTATAATAAAGAGGAGATAAATCAGATTGCATGCAACTCTAAGTCTTCTTTTCTTGCTGCTACGGATGATGGCGGTGAAATTAAGATTATTGACATTTGTCAGAAACGCATTTACAAAACATTAAGAGCTGGCCATACAAGTATTTGTAGCAGCGTGCAATTTCTTCCTTGGAGACCGTGGGAAGTTATCACTGGAGGTCTTGATTCAAAGCTTGTGATGTGGGATTTTTCCAAGGGGCGCCCTAACAAAATTATGAATTTTGGCTTATCTGATGCAAATAATGGTGATGGCAAGGAACAGTGTTTCAATCCTGCTTTTGTTCACGCAATAGAAGTTCCAGAAATTGATATGTTAGACAAATCAGACAAGGTTTGTGTTGTGGCTAGGGGTGATGGTGCAGTTGATGTGATTAATATAGAAGCTGAACTTGCTACCATGAGGTCAAAAGGTTCTAGAAAACCTCAGAAAGGATCTCAATCAAGATCAAAAGAAAAGGAAATCCCAGATCAAAATGGATGGAAAAGGTTGCATTTGGATTACTCATCAGGCGGTCATACTGCTGCAGTCTCTTGTGTGGCATTTTCGTTGTTTGGGGATAGAGGAAGATTTATAATTTCAGGTGGAAATGATAAGTTGGTAAAGGTCTGGGATTGGACCAAATGTCTTGATGCAGGACAGACTATCAGCAGCAGTGATCTTCTACATTTGAATATCAACCTCAGCAAAAAAGTCAATTGGTTCTGTACTACTCCGGCTGATATGGAAAACCTAGTTGTTTGTGATACAACTAAGGTGGTAAAGGTCTATTCTGTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

373

Amino Acids

41.02

Weight (kDa)

6.96

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45760 AT5G45760
fragaria_vesca	FvH4_1g07520 FvH4_1g07520 FvH4_1g07520 FvH4_3g07410
malus_domestica	MD05G1296500.v1.1
prunus_persica	Prupe.4G065800_v2.0.a1
pyrus_communis	pycom05g27500
rosa_chinensis	RchiOBHm_Chr5g0011451 RchiOBHm_Chr5g0011471
rosa_laevigata	RLG00000031836
rosa_multiflora	Rmu_co8262969.1_g000001 Rmu_sc0009001.1_g000002 Rmu_sc0009975.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064980 Rroxscaffold_1G00064990
rosa_rugosa	Rorug04G0457100
rosa_samantha	Rh5AG089000 Rh5BG084200 Rh5CG097700 Rh5CG097900 Rh5DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	303, 911
AccB1I	GGYRCC	1 cut(s)	537
AciI	CCGC	4 cut(s)	5, 22, 372, 849
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	556
AcvI	CACGTG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	1 cut(s)	1045
AfiI	CCNNNNNNNGG	1 cut(s)	767
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	507, 607, 1009
AhdI	GACNNNNNGTC	1 cut(s)	960
AjnI	CCWGG	2 cut(s)	76, 196
AluBI	AGCT	4 cut(s)	246, 428, 511, 722
AluI	AGCT	4 cut(s)	246, 428, 511, 722
Alw26I	GTCTC	2 cut(s)	466, 871
AlwI	GGATC	1 cut(s)	778
AoxI	GGCC	5 cut(s)	31, 39, 79, 194, 430
ApeKI	GCWGC	5 cut(s)	108, 356, 450, 860, 987
ApoI	RAATTY	1 cut(s)	556
AseI	ATTAAT	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	3 cut(s)	7, 31, 954
AsuHPI	GGTGA	3 cut(s)	386, 596, 701
AvaII	GGWCC	2 cut(s)	7, 954
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	2 cut(s)	26, 1019
BbvI	GCAGC	5 cut(s)	95, 343, 462, 847, 999
BccI	CCATC	5 cut(s)	98, 362, 581, 686, 810
BciT130I	CCWGG	2 cut(s)	78, 198
BcoDI	GTCTC	2 cut(s)	466, 871
BfaI	CTAG	4 cut(s)	684, 753, 1070, 1117
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	541
BisI	GCNGC	6 cut(s)	23, 109, 357, 451, 861, 988
BlsI	GCNGC	6 cut(s)	24, 110, 358, 452, 862, 989
Bme1390I	CCNGG	2 cut(s)	78, 198
Bme18I	GGWCC	2 cut(s)	7, 954
BmeRI	GACNNNNNGTC	1 cut(s)	960
BmgT120I	GGNCC	3 cut(s)	7, 31, 954
BmiI	GGNNCC	3 cut(s)	32, 171, 539
BmrFI	CCNGG	2 cut(s)	78, 198
BmsI	GCATC	4 cut(s)	66, 122, 562, 958
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	2 cut(s)	26, 1019
BsaAI	YACGTR	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	775
BsaHI	GRCGYC	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	5 cut(s)	17, 76, 467, 476, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse1I	ACTGG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	78, 198
BseDI	CCNNGG	5 cut(s)	17, 76, 467, 476, 531
BseGI	GGATG	3 cut(s)	109, 370, 821
BseJI	GATNNNNATC	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMII	CTCAG	4 cut(s)	17, 219, 776, 1033
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	5 cut(s)	95, 343, 462, 847, 999
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	5 cut(s)	33, 41, 81, 196, 432
BshNI	GGYRCC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	96, 1052
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	2 cut(s)	466, 871
BsnI	GGCC	5 cut(s)	33, 41, 81, 196, 432
Bso31I	GGTCTC	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	213, 770, 782, 805, 994
BspACI	CCGC	4 cut(s)	5, 22, 372, 849
BspANI	GGCC	5 cut(s)	33, 41, 81, 196, 432
BspCNI	CTCAG	4 cut(s)	18, 220, 775, 1032
BspLI	GGNNCC	3 cut(s)	32, 171, 539
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	1 cut(s)	778
BspT107I	GGYRCC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	5 cut(s)	17, 76, 467, 476, 531
BssMI	GATC	5 cut(s)	213, 770, 782, 805, 994
BssNI	GRCGYC	1 cut(s)	538
BssT1I	CCWWGG	3 cut(s)	17, 467, 531
Bst2UI	CCWGG	2 cut(s)	78, 198
Bst4CI	ACNGT	2 cut(s)	477, 600
BstACI	GRCGYC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	331, 430, 455
BstDEI	CTNAG	6 cut(s)	26, 228, 339, 762, 1019, 1089
BstDSI	CCRYGG	1 cut(s)	476
BstENI	CCTNNNNNAGG	1 cut(s)	765
BstF5I	GGATG	3 cut(s)	109, 370, 821
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	5 cut(s)	216, 773, 785, 808, 997
BstMAI	GTCTC	2 cut(s)	466, 871
BstMBI	GATC	5 cut(s)	213, 770, 782, 805, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 114, 728
BstNI	CCWGG	2 cut(s)	78, 198
BstNSI	RCATGY	1 cut(s)	333
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	76, 196
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	5 cut(s)	95, 343, 462, 847, 999
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BsuRI	GGCC	5 cut(s)	33, 41, 81, 196, 432
BtgI	CCRYGG	1 cut(s)	476
BtgZI	GCGATG	2 cut(s)	43, 145
BtsCI	GGATG	3 cut(s)	109, 370, 821
BtsI	GCAGTG	3 cut(s)	42, 90, 997
BtsIMutI	CAGTG	5 cut(s)	42, 90, 489, 605, 997
Cac8I	GCNNGC	3 cut(s)	331, 430, 455
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	7, 31, 954
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	1044
CspCI	CAANNNNNGTGG	2 cut(s)	1074, 1109
CviAII	CATG	3 cut(s)	276, 330, 736
CviQI	GTAC	1 cut(s)	1044
DdeI	CTNAG	6 cut(s)	26, 228, 339, 762, 1019, 1089
DinI	GGCGCC	1 cut(s)	539
DpnI	GATC	5 cut(s)	215, 772, 784, 807, 996
DpnII	GATC	5 cut(s)	213, 770, 782, 805, 994
DriI	GACNNNNNGTC	1 cut(s)	960
EaeI	YGGCCR	1 cut(s)	430
Eam1105I	GACNNNNNGTC	1 cut(s)	960
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	17, 467, 531
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	7, 954
Eco72I	CACGTG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	76, 196
EcoT14I	CCWWGG	3 cut(s)	17, 467, 531
EgeI	GGCGCC	1 cut(s)	539
EheI	GGCGCC	1 cut(s)	539
ErhI	CCWWGG	3 cut(s)	17, 467, 531
FaeI	CATG	3 cut(s)	279, 333, 739
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FatI	CATG	3 cut(s)	275, 329, 735
Fnu4HI	GCNGC	6 cut(s)	23, 109, 357, 451, 861, 988
FokI	GGATG	3 cut(s)	116, 377, 828
Fsp4HI	GCNGC	6 cut(s)	23, 109, 357, 451, 861, 988
FspBI	CTAG	4 cut(s)	684, 753, 1070, 1117
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	6 cut(s)	23, 109, 357, 451, 861, 988
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	5 cut(s)	33, 41, 81, 196, 432
HapII	CCGG	2 cut(s)	96, 1052
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	279, 333, 739
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	2 cut(s)	96, 1052
HphI	GGTGA	3 cut(s)	386, 596, 701
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	6 cut(s)	229, 324, 402, 571, 664, 765
Hpy188III	TCNNGA	6 cut(s)	241, 500, 638, 753, 780, 965
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	477, 600
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 114, 728
HpyF3I	CTNAG	6 cut(s)	26, 228, 339, 762, 1019, 1089
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	279, 333, 739
HspAI	GCGC	1 cut(s)	538
KasI	GGCGCC	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	213, 770, 782, 805, 994
Lsp1109I	GCAGC	5 cut(s)	95, 343, 462, 847, 999
LweI	GCATC	4 cut(s)	66, 122, 562, 958
MaeI	CTAG	4 cut(s)	684, 753, 1070, 1117
MaeII	ACGT	1 cut(s)	50
MalI	GATC	5 cut(s)	215, 772, 784, 807, 996
MboI	GATC	5 cut(s)	213, 770, 782, 805, 994
MboII	GAAGA	4 cut(s)	336, 455, 915, 989
MfeI	CAATTG	1 cut(s)	1033
MflI	RGATCY	1 cut(s)	770
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	7 cut(s)	378, 458, 549, 556, 642, 912, 1033
MluNI	TGGCCA	1 cut(s)	432
Mly113I	GGCGCC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	3 cut(s)	381, 422, 711
MslI	CAYNNNNRTG	1 cut(s)	184
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	2 cut(s)	96, 1052
MspR9I	CCNGG	2 cut(s)	78, 198
MunI	CAATTG	1 cut(s)	1033
MvaI	CCWGG	2 cut(s)	78, 198
MwoI	GCNNNNNNNGC	3 cut(s)	68, 114, 728
NarI	GGCGCC	1 cut(s)	538
NdeII	GATC	5 cut(s)	213, 770, 782, 805, 994
NlaIII	CATG	3 cut(s)	279, 333, 739
NlaIV	GGNNCC	3 cut(s)	32, 171, 539
NspI	RCATGY	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	503
PkrI	GCNGC	6 cut(s)	24, 110, 358, 452, 862, 989
PluTI	GGCGCC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
PshAI	GACNNNNGTC	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	711
PsiI	TTATAA	2 cut(s)	303, 911
Psp6I	CCWGG	2 cut(s)	76, 196
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	76, 196
PspN4I	GGNNCC	3 cut(s)	32, 171, 539
PspPI	GGNCC	3 cut(s)	7, 31, 954
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	770
RsaI	GTAC	1 cut(s)	1045
RsaNI	GTAC	1 cut(s)	1044
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	381, 422, 711
SatI	GCNGC	6 cut(s)	23, 109, 357, 451, 861, 988
Sau3AI	GATC	5 cut(s)	213, 770, 782, 805, 994
Sau96I	GGNCC	3 cut(s)	7, 31, 954
ScrFI	CCNGG	2 cut(s)	78, 198
SfaNI	GCATC	4 cut(s)	66, 122, 562, 958
SfcI	CTRYAG	1 cut(s)	861
SfoI	GGCGCC	1 cut(s)	539
SinI	GGWCC	2 cut(s)	7, 954
SmiMI	CAYNNNNRTG	1 cut(s)	184
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	7 cut(s)	378, 458, 549, 556, 642, 912, 1033
SsiI	CCGC	4 cut(s)	5, 22, 372, 849
SspDI	GGCGCC	1 cut(s)	537
SspMI	CTAG	4 cut(s)	684, 753, 1070, 1117
StyD4I	CCNGG	2 cut(s)	76, 196
StyI	CCWWGG	3 cut(s)	17, 467, 531
TaaI	ACNGT	2 cut(s)	477, 600
TaiI	ACGT	1 cut(s)	53
TasI	AATT	7 cut(s)	378, 458, 549, 556, 642, 912, 1033
TatI	WGTACW	1 cut(s)	1043
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	3 cut(s)	381, 422, 711
Tru9I	TTAA	3 cut(s)	381, 422, 711
TscAI	CASTG	5 cut(s)	49, 97, 496, 605, 997
TseI	GCWGC	5 cut(s)	108, 356, 450, 860, 987
TspDTI	ATGAA	4 cut(s)	168, 213, 219, 569
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	5 cut(s)	49, 97, 496, 605, 997
VpaK11BI	GGWCC	2 cut(s)	7, 954
VspI	ATTAAT	1 cut(s)	711
XagI	CCTNNNNNAGG	1 cut(s)	765
XapI	RAATTY	1 cut(s)	556
XbaI	TCTAGA	1 cut(s)	752
XceI	RCATGY	1 cut(s)	333
XspI	CTAG	4 cut(s)	684, 753, 1070, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.