Rroxscaffold_1G00064980

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008398
Physical Location & Seq
Forward (+)
86790106 .. 86792589
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064980.1

Sequence Viewer

Length: 693 bp
ATGCAAAGAAGTGATAGACATAATGTCATAATGGAAGTGGGAAAGGAAGCTGGTACATCGCGTTATGCTTCAAGCCAGGGGAGTTCCTGCTCATGGAATGTGCTGGAGAGTTTTGAGTATAATAAAGAGAAGATAAATCAGATTGCATGCAGCTCTAAGGCTTCTTTTCTTGCTGCTGCCGATGTTGGTGGTGATATTAAGATGGTTGACATTCGCCAGGGGCGCATTTACAGAACATTAAGAGCTGATGCTTGCCATACAAGTGCAAGGTTTTGTGTTGTGGCTCGGGGTCATGGTGCAGTTGACGTGATTAATATTCAAGATGAACTTTCTATAAGGTCAAAAGGTTTTACAAAACCACGGAAAGGATCTCAATCAAGATCCAAAGACACTGATCTGGAAATCCCAGATCAAATCGGAAGGAAGAGGTTGCATTTGGAATACTCATCAGGCGGTCACACTGCTACTTTGTCTTGTGCAATAGACTTTAATGCAGTGCAAGAAAACTTATTACACTCATTTGACTCGTTGATATCCTTCAGGGCATTTTCGTTGTATGGGGAGAAAGGAAGATTTATAATTTCAGGCGGAAACGAAAAGCAGGTCAACTGGCTCTGTACCACTCCAGCTGATATGGAAAACCTTGTTGTCTTTGATGCAACTAAGGTGGTGAAGGTCTACTCTGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

230

Amino Acids

25.41

Weight (kDa)

8.71

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 592
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 453, 588
AclWI GGATC 2 cut(s) 375, 376
AcuI CTGAAG 1 cut(s) 523
AfaI GTAC 2 cut(s) 55, 619
AfiI CCNNNNNNNGG 2 cut(s) 93, 365
AgsI TTSAA 2 cut(s) 72, 320
AhdI GACNNNNNGTC 1 cut(s) 23
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 75, 216
AluBI AGCT 4 cut(s) 50, 153, 245, 629
AluI AGCT 4 cut(s) 50, 153, 245, 629
AlwI GGATC 2 cut(s) 375, 376
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 150, 173, 176
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 203, 682
AvaI CYCGRG 1 cut(s) 285
BbvI GCAGC 3 cut(s) 160, 162, 163
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 77, 218
BfuAI ACCTGC 1 cut(s) 592
BisI GCNGC 3 cut(s) 151, 174, 177
BlsI GCNGC 3 cut(s) 152, 175, 178
Bme1390I CCNGG 2 cut(s) 77, 218
BmeRI GACNNNNNGTC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 77, 218
BmsI GCATC 2 cut(s) 238, 646
BpmI CTGGAG 2 cut(s) 125, 609
BsaBI GATNNNNATC 1 cut(s) 373
BsaJI CCNNGG 3 cut(s) 76, 217, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 365
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 2 cut(s) 77, 218
BseDI CCNNGG 3 cut(s) 76, 217, 359
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 93, 365
BseNI ACTGG 1 cut(s) 614
BseXI GCAGC 3 cut(s) 160, 162, 163
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 93, 365
BsoBI CYCGRG 1 cut(s) 285
Bsp143I GATC 4 cut(s) 368, 380, 394, 409
BspACI CCGC 2 cut(s) 453, 588
BspFNI CGCG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 2 cut(s) 375, 376
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 76, 217, 359
BssMI GATC 4 cut(s) 368, 380, 394, 409
Bst2UI CCWGG 2 cut(s) 77, 218
Bst6I CTCTTC 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 148, 253
BstDEI CTNAG 2 cut(s) 156, 663
BstDSI CCRYGG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 371, 383, 397, 412
BstMBI GATC 4 cut(s) 368, 380, 394, 409
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 2 cut(s) 77, 218
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 75, 216
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 160, 162, 163
BstX2I RGATCY 2 cut(s) 368, 380
BstYI RGATCY 2 cut(s) 368, 380
BtgI CCRYGG 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 307
BtsI GCAGTG 2 cut(s) 459, 501
BtsIMutI CAGTG 3 cut(s) 390, 459, 501
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 2 cut(s) 148, 253
CfoI GCGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 54, 618
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 3 cut(s) 93, 147, 293
CviJI RGCY 8 cut(s) 50, 75, 153, 161, 245, 284, 613, 629
CviKI_1 RGCY 8 cut(s) 50, 75, 153, 161, 245, 284, 613, 629
CviQI GTAC 2 cut(s) 54, 618
DdeI CTNAG 2 cut(s) 156, 663
DpnI GATC 4 cut(s) 370, 382, 396, 411
DpnII GATC 4 cut(s) 368, 380, 394, 409
DriI GACNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 419
Eam1105I GACNNNNNGTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 419
EciI GGCGGA 1 cut(s) 603
Eco32I GATATC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 75, 216
EcoRV GATATC 1 cut(s) 534
FaeI CATG 3 cut(s) 96, 150, 296
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 3 cut(s) 92, 146, 292
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 3 cut(s) 151, 174, 177
Fsp4HI GCNGC 3 cut(s) 151, 174, 177
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 151, 174, 177
GsuI CTGGAG 2 cut(s) 125, 609
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 96, 150, 296
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 3 cut(s) 208, 304, 607
HindII GTYRAC 3 cut(s) 208, 304, 607
HinfI GANTC 1 cut(s) 524
HphI GGTGA 2 cut(s) 203, 682
Hpy166II GTNNAC 4 cut(s) 208, 304, 607, 679
Hpy188I TCNGA 2 cut(s) 141, 419
Hpy188III TCNNGA 3 cut(s) 320, 378, 398
Hpy8I GTNNAC 4 cut(s) 208, 304, 607, 679
HpyAV CCTTC 3 cut(s) 414, 547, 667
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 156, 663
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 96, 150, 296
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 368, 380, 394, 409
Lsp1109I GCAGC 3 cut(s) 160, 162, 163
LweI GCATC 2 cut(s) 238, 646
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 455
MalI GATC 4 cut(s) 370, 382, 396, 411
MboI GATC 4 cut(s) 368, 380, 394, 409
MboII GAAGA 3 cut(s) 142, 436, 582
MflI RGATCY 2 cut(s) 368, 380
MluCI AATT 1 cut(s) 579
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 1 cut(s) 420
MseI TTAA 4 cut(s) 198, 239, 312, 489
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 77, 218
MvaI CCWGG 2 cut(s) 77, 218
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 4 cut(s) 368, 380, 394, 409
NlaIII CATG 3 cut(s) 96, 150, 296
NmuCI GTSAC 1 cut(s) 455
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 152, 175, 178
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 75, 216
PspGI CCWGG 2 cut(s) 75, 216
PsuI RGATCY 2 cut(s) 368, 380
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 55, 619
RsaNI GTAC 2 cut(s) 54, 618
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 4 cut(s) 198, 239, 312, 489
SatI GCNGC 3 cut(s) 151, 174, 177
Sau3AI GATC 4 cut(s) 368, 380, 394, 409
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 2 cut(s) 77, 218
SfaNI GCATC 2 cut(s) 238, 646
SmiMI CAYNNNNRTG 1 cut(s) 261
SphI GCATGC 1 cut(s) 150
Sse9I AATT 1 cut(s) 579
SsiI CCGC 2 cut(s) 453, 588
SspI AATATT 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 75, 216
TaiI ACGT 1 cut(s) 309
TasI AATT 1 cut(s) 579
Tru1I TTAA 4 cut(s) 198, 239, 312, 489
Tru9I TTAA 4 cut(s) 198, 239, 312, 489
TscAI CASTG 3 cut(s) 397, 466, 501
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 150, 173, 176
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 3 cut(s) 397, 466, 501
VspI ATTAAT 1 cut(s) 312
XceI RCATGY 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.