Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008398

Physical Location & Seq

Genomic Coordinates Forward (+)

28486529 .. 28489406

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTGTGGGCCGCTGACTAGCAGCAGCAGCACCGCCAACACCACCGCGCTCGCCGAACGAAAGACCAAACTAAAACGAAGAGTGACAAAGGTAAAGGAGGAGATGGCGGACCCGAAACCAAGGCGACTGAAGGGTCACAAGGCTACCGCCACGTGCTGCATCGCCTCAGCCGCTACACCCGGCCTCGTCGCCTCCTCAGGCGAGGATGGCTGCATTTGCTGGTTCGATATGCGATGCAAAGATGCGATTGATATCATGGAGGTGGGAGAGGAACCCATTTCATCCTTATGTTTCAGGCCAGGAAATGAAAATATGATATATGTTGCATCCGGGAAGCAAGTCAAGAGCTTTGATGTCCGTCTGGGGAGTTCATGCTCGTGGAAGCCCCTGGAGAGCTTTGATTATAACAAAGAAGAGATAAATCAGATTGCTTGCAGCTCTAAGTCCTCTTTTCTTGCTGCTCCCGATGACGGCGGTGAAATTAAGATTATTGACATTCGCCAGAAACGAATTTACAAAACATTAAGAGATGGCCATACAAGTATTTGTAGCACCGCGCAATTCCTTCCTTGGAAACCTTGGGAAGTTATCACGGGAGGTCTTGATTCAAAGCTTGTAATGTGGGATTTCTCCAAGGGGCGCCCGAACAAAATTATGAACTTTGATTTGCCTGATGCAAATAATGGCGAGGCCAAGGAACAGTGTTTTAATCCTGCTTTTGTTCACTCAATAGCTGTTCCAGAAATGGATATGTTAGACAAATCAGACAAGGTTTGCATTGTGGCTAGGGGTGATGGTGCAGTTGATGTAATTAATCTAGAAGCTGAACTTGCTCACCTGAGGTCAAAAGGTTCTAAAAAACCTCAGAAAGGATCGATCAATCAAGATCGAAAGGTACTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

302

Amino Acids

33.11

Weight (kDa)

8.52

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45760 AT5G45760
fragaria_vesca	FvH4_1g07520 FvH4_1g07520 FvH4_1g07520 FvH4_3g07410
malus_domestica	MD05G1296500.v1.1
prunus_persica	Prupe.4G065800_v2.0.a1
pyrus_communis	pycom05g27500
rosa_chinensis	RchiOBHm_Chr5g0011451 RchiOBHm_Chr5g0011471
rosa_laevigata	RLG00000031836
rosa_multiflora	Rmu_co8262969.1_g000001 Rmu_sc0009001.1_g000002 Rmu_sc0009975.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064980 Rroxscaffold_1G00064990
rosa_rugosa	Rorug04G0457100
rosa_samantha	Rh5AG089000 Rh5BG084200 Rh5CG097700 Rh5CG097900 Rh5DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AasI	GACNNNNNNGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	639
AccII	CGCG	2 cut(s)	47, 557
AciI	CCGC	8 cut(s)	11, 33, 45, 107, 147, 171, 474, 555
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	149
AcvI	CACGTG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	640
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	2 cut(s)	470, 869
AgsI	TTSAA	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	298, 387
AluBI	AGCT	6 cut(s)	348, 396, 438, 613, 734, 824
AluI	AGCT	6 cut(s)	348, 396, 438, 613, 734, 824
AlwI	GGATC	1 cut(s)	880
AoxI	GGCC	5 cut(s)	8, 181, 296, 532, 690
ApeKI	GCWGC	7 cut(s)	21, 24, 27, 156, 210, 435, 458
ApoI	RAATTY	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	813
AspLEI	GCGC	3 cut(s)	49, 559, 642
AspS9I	GGNCC	2 cut(s)	8, 109
AsuC2I	CCSGG	2 cut(s)	180, 331
AsuHPI	GGTGA	3 cut(s)	488, 803, 827
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	2 cut(s)	196, 839
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	639
BauI	CACGAG	1 cut(s)	376
BbrPI	CACGTG	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	7 cut(s)	33, 36, 39, 143, 197, 445, 447
BccI	CCATC	4 cut(s)	97, 200, 524, 788
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	2 cut(s)	300, 389
BcnI	CCSGG	2 cut(s)	180, 331
BfaI	CTAG	4 cut(s)	18, 786, 818, 904
BfoI	RGCGCY	1 cut(s)	643
BisI	GCNGC	9 cut(s)	11, 22, 25, 28, 157, 171, 211, 436, 459
BlsI	GCNGC	9 cut(s)	12, 23, 26, 29, 158, 172, 212, 437, 460
Bme1390I	CCNGG	4 cut(s)	180, 300, 331, 389
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	8, 109
BmiI	GGNNCC	3 cut(s)	111, 273, 641
BmrFI	CCNGG	4 cut(s)	180, 300, 331, 389
BmsI	GCATC	5 cut(s)	168, 224, 232, 335, 664
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	180, 331
Bsa29I	ATCGAT	1 cut(s)	875
BsaAI	YACGTR	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	640
BsaJI	CCNNGG	6 cut(s)	119, 387, 569, 578, 633, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 869
Bse21I	CCTNAGG	2 cut(s)	196, 839
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	300, 389
BseCI	ATCGAT	1 cut(s)	875
BseDI	CCNNGG	6 cut(s)	119, 387, 569, 578, 633, 693
BseGI	GGATG	3 cut(s)	211, 281, 326
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	470, 869
BseMII	CTCAG	4 cut(s)	180, 210, 830, 878
BseRI	GAGGAG	2 cut(s)	113, 184
BseXI	GCAGC	7 cut(s)	33, 36, 39, 143, 197, 445, 447
BsgI	GTGCAG	1 cut(s)	819
Bsh1236I	CGCG	2 cut(s)	47, 557
BshFI	GGCC	5 cut(s)	10, 183, 298, 534, 692
BshNI	GGYRCC	1 cut(s)	639
BshVI	ATCGAT	1 cut(s)	875
BsiSI	CCGG	2 cut(s)	180, 330
BslI	CCNNNNNNNGG	2 cut(s)	470, 869
BsnI	GGCC	5 cut(s)	10, 183, 298, 534, 692
Bsp143I	GATC	4 cut(s)	872, 876, 886, 900
BspACI	CCGC	8 cut(s)	11, 33, 45, 107, 147, 171, 474, 555
BspANI	GGCC	5 cut(s)	10, 183, 298, 534, 692
BspCNI	CTCAG	4 cut(s)	179, 209, 831, 877
BspDI	ATCGAT	1 cut(s)	875
BspFNI	CGCG	2 cut(s)	47, 557
BspLI	GGNNCC	3 cut(s)	111, 273, 641
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	639
BssECI	CCNNGG	6 cut(s)	119, 387, 569, 578, 633, 693
BssMI	GATC	4 cut(s)	872, 876, 886, 900
BssNI	GRCGYC	1 cut(s)	640
BssSI	CACGAG	1 cut(s)	376
BssT1I	CCWWGG	5 cut(s)	119, 569, 578, 633, 693
Bst2BI	CACGAG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	300, 389
Bst4CI	ACNGT	1 cut(s)	702
Bst6I	CTCTTC	2 cut(s)	73, 408
BstACI	GRCGYC	1 cut(s)	640
BstBAI	YACGTR	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	51, 433
BstDEI	CTNAG	5 cut(s)	166, 196, 441, 839, 864
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	3 cut(s)	211, 281, 326
BstFNI	CGCG	2 cut(s)	47, 557
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	3 cut(s)	49, 559, 642
BstKTI	GATC	4 cut(s)	875, 879, 889, 903
BstMBI	GATC	4 cut(s)	872, 876, 886, 900
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 170, 207, 216, 830
BstNI	CCWGG	2 cut(s)	300, 389
BstSCI	CCNGG	4 cut(s)	178, 298, 329, 387
BstUI	CGCG	2 cut(s)	47, 557
BstV1I	GCAGC	7 cut(s)	33, 36, 39, 143, 197, 445, 447
Bsu15I	ATCGAT	1 cut(s)	875
Bsu36I	CCTNAGG	2 cut(s)	196, 839
BsuRI	GGCC	5 cut(s)	10, 183, 298, 534, 692
BsuTUI	ATCGAT	1 cut(s)	875
BtgZI	GCGATG	2 cut(s)	145, 247
BtsCI	GGATG	3 cut(s)	211, 281, 326
BtsIMutI	CAGTG	1 cut(s)	707
Cac8I	GCNNGC	2 cut(s)	51, 433
CfoI	GCGC	3 cut(s)	49, 559, 642
Cfr13I	GGNCC	2 cut(s)	8, 109
ClaI	ATCGAT	1 cut(s)	875
Csp6I	GTAC	1 cut(s)	896
CviAII	CATG	2 cut(s)	256, 372
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	5 cut(s)	166, 196, 441, 839, 864
DinI	GGCGCC	1 cut(s)	641
DpnI	GATC	4 cut(s)	874, 878, 888, 902
DpnII	GATC	4 cut(s)	872, 876, 886, 900
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	73, 408
EarI	CTCTTC	2 cut(s)	73, 408
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	5 cut(s)	119, 569, 578, 633, 693
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	149
Eco72I	CACGTG	1 cut(s)	153
Eco81I	CCTNAGG	2 cut(s)	196, 839
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoRII	CCWGG	2 cut(s)	298, 387
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	5 cut(s)	119, 569, 578, 633, 693
EgeI	GGCGCC	1 cut(s)	641
EheI	GGCGCC	1 cut(s)	641
ErhI	CCWWGG	5 cut(s)	119, 569, 578, 633, 693
FaeI	CATG	2 cut(s)	259, 375
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	2 cut(s)	255, 371
Fnu4HI	GCNGC	9 cut(s)	11, 22, 25, 28, 157, 171, 211, 436, 459
FokI	GGATG	3 cut(s)	218, 268, 313
Fsp4HI	GCNGC	9 cut(s)	11, 22, 25, 28, 157, 171, 211, 436, 459
FspBI	CTAG	4 cut(s)	18, 786, 818, 904
GlaI	GCGC	3 cut(s)	48, 558, 641
GluI	GCNGC	9 cut(s)	11, 22, 25, 28, 157, 171, 211, 436, 459
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	5 cut(s)	10, 183, 298, 534, 692
HapII	CCGG	2 cut(s)	180, 330
HhaI	GCGC	3 cut(s)	49, 559, 642
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	259, 375
Hin6I	GCGC	3 cut(s)	47, 557, 640
HinP1I	GCGC	3 cut(s)	47, 557, 640
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	1 cut(s)	605
HpaII	CCGG	2 cut(s)	180, 330
HphI	GGTGA	3 cut(s)	488, 803, 827
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	3 cut(s)	426, 766, 867
Hpy188III	TCNNGA	6 cut(s)	343, 464, 602, 740, 818, 884
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	124, 575
HpyCH4III	ACNGT	1 cut(s)	702
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	8 cut(s)	159, 213, 237, 326, 435, 677, 777, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 170, 207, 216, 830
HpyF3I	CTNAG	5 cut(s)	166, 196, 441, 839, 864
HpySE526I	ACGT	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	2 cut(s)	259, 375
HspAI	GCGC	3 cut(s)	47, 557, 640
KasI	GGCGCC	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	872, 876, 886, 900
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	7 cut(s)	33, 36, 39, 143, 197, 445, 447
LweI	GCATC	5 cut(s)	168, 224, 232, 335, 664
MaeI	CTAG	4 cut(s)	18, 786, 818, 904
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	82, 134
MalI	GATC	4 cut(s)	874, 878, 888, 902
MboI	GATC	4 cut(s)	872, 876, 886, 900
MboII	GAAGA	2 cut(s)	90, 425
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	5 cut(s)	480, 510, 560, 651, 810
MluNI	TGGCCA	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	640
Mox20I	TGGCCA	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	4 cut(s)	483, 524, 708, 813
MslI	CAYNNNNRTG	3 cut(s)	260, 286, 376
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	180, 330
MspR9I	CCNGG	4 cut(s)	180, 300, 331, 389
MvaI	CCWGG	2 cut(s)	300, 389
MvnI	CGCG	2 cut(s)	47, 557
MwoI	GCNNNNNNNGC	5 cut(s)	27, 170, 207, 216, 830
NarI	GGCGCC	1 cut(s)	640
NciI	CCSGG	2 cut(s)	180, 331
NdeII	GATC	4 cut(s)	872, 876, 886, 900
NlaIII	CATG	2 cut(s)	259, 375
NlaIV	GGNNCC	3 cut(s)	111, 273, 641
NmuCI	GTSAC	2 cut(s)	82, 134
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	9 cut(s)	12, 23, 26, 29, 158, 172, 212, 437, 460
PluTI	GGCGCC	1 cut(s)	643
PmaCI	CACGTG	1 cut(s)	153
PmlI	CACGTG	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	813
PsiI	TTATAA	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	298, 387
PspCI	CACGTG	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	298, 387
PspN4I	GGNNCC	3 cut(s)	111, 273, 641
PspPI	GGNCC	2 cut(s)	8, 109
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	3 cut(s)	260, 286, 376
SaqAI	TTAA	4 cut(s)	483, 524, 708, 813
SatI	GCNGC	9 cut(s)	11, 22, 25, 28, 157, 171, 211, 436, 459
Sau3AI	GATC	4 cut(s)	872, 876, 886, 900
Sau96I	GGNCC	2 cut(s)	8, 109
ScrFI	CCNGG	4 cut(s)	180, 300, 331, 389
SfaNI	GCATC	5 cut(s)	168, 224, 232, 335, 664
SfoI	GGCGCC	1 cut(s)	641
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	3 cut(s)	260, 286, 376
Sse9I	AATT	5 cut(s)	480, 510, 560, 651, 810
SsiI	CCGC	8 cut(s)	11, 33, 45, 107, 147, 171, 474, 555
SspDI	GGCGCC	1 cut(s)	639
SspMI	CTAG	4 cut(s)	18, 786, 818, 904
StyD4I	CCNGG	4 cut(s)	178, 298, 329, 387
StyI	CCWWGG	5 cut(s)	119, 569, 578, 633, 693
TaaI	ACNGT	1 cut(s)	702
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	225, 875, 889
TasI	AATT	5 cut(s)	480, 510, 560, 651, 810
TauI	GCSGC	2 cut(s)	13, 173
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	4 cut(s)	483, 524, 708, 813
Tru9I	TTAA	4 cut(s)	483, 524, 708, 813
TscAI	CASTG	1 cut(s)	707
TseFI	GTSAC	2 cut(s)	82, 134
TseI	GCWGC	7 cut(s)	21, 24, 27, 156, 210, 435, 458
Tsp45I	GTSAC	2 cut(s)	82, 134
TspDTI	ATGAA	4 cut(s)	270, 321, 360, 671
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	813
XagI	CCTNNNNNAGG	1 cut(s)	867
XapI	RAATTY	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	817
XspI	CTAG	4 cut(s)	18, 786, 818, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.