Rh5CG097900

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008398
Physical Location & Seq
Reverse (-)
7774887 .. 7776647
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG097900.1

Sequence Viewer

Length: 630 bp
ATGCAAAGAAGTGATAGACATAATGGAAGTGGGAAAGGAAGCTGGAATGAAACTGTGGTATATGTGTCATCGGGGAGGAAATTTAAGAGCTTTGATGTGCGTCTGGCCGGTAAGTCATCAAATCTCATTGTCTCTGTGTTTGTTTGTTTCCATTTTTGGAAGGGGAGTTCTTGCTCATGGAATGTGCTGGAGAGTTTTGAGTATAATAAAGAGAAGATAAATCAGATTGCATGCAGCTCTAAGGCTTCTTTTCTTGCTGCTGCCGATGATGGTGGTGATATTAAGATCGTTGACATTCGCCGGGAGCGCATTTACAGAACATTAAGAGCTGATGCTTGCCATACAAGTAGGTACTTTCAAATGGCTTGTAAACCTAGAATCTTCCATCCCATTGCATTCTGTCTATCCTGGAATTCTTTGCATTGTATCCACCTTGATCGTATAAGTAGCAGCATGCAATTTCTTCCTTTGAGACCTTCGGAAGTTATTACTGGAGGTCTTGATCCGAAGCTAGTGATGTGGGACTTTTCGAAGGGGCGCCCAAACAAGATATTAAATTTTGGCAAATATCCATCTTCTCTGCCATTTAACTTGTTTGATATAACTAGAATGATATTTAATCACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

209

Amino Acids

23.94

Weight (kDa)

9.59

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 40 - 127 4.7e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 537
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 80, 412, 556
AcyI GRCGYC 1 cut(s) 538
AfaI GTAC 1 cut(s) 353
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 1 cut(s) 407
AloI GAACNNNNNNTCC 2 cut(s) 151, 183
AluBI AGCT 5 cut(s) 42, 90, 237, 329, 511
AluI AGCT 5 cut(s) 42, 90, 237, 329, 511
Alw26I GTCTC 2 cut(s) 136, 466
AlwI GGATC 1 cut(s) 497
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 4 cut(s) 234, 257, 260, 450
ApoI RAATTY 3 cut(s) 80, 412, 556
AspLEI GCGC 2 cut(s) 309, 540
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 287
AsuII TTCGAA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 537
BbvI GCAGC 4 cut(s) 244, 246, 247, 462
BccI CCATC 3 cut(s) 263, 393, 580
BciT130I CCWGG 1 cut(s) 409
BciVI GTATCC 1 cut(s) 437
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 136, 466
BfaI CTAG 3 cut(s) 375, 512, 606
BfoI RGCGCY 1 cut(s) 541
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 4 cut(s) 235, 258, 261, 451
BlsI GCNGC 4 cut(s) 236, 259, 262, 452
Bme1390I CCNGG 2 cut(s) 302, 409
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 2 cut(s) 302, 409
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 2 cut(s) 209, 513
Bpu14I TTCGAA 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 466
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 4 cut(s) 244, 246, 247, 462
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 537
BsiSI CCGG 2 cut(s) 108, 301
BslFI GGGAC 1 cut(s) 536
BsmAI GTCTC 2 cut(s) 136, 466
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 466
Bsp119I TTCGAA 1 cut(s) 530
Bsp143I GATC 3 cut(s) 285, 436, 502
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 539
BspPI GGATC 1 cut(s) 497
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 537
BspTNI GGTCTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 3 cut(s) 285, 436, 502
BssNI GRCGYC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 232, 337, 455
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 385
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 2 cut(s) 309, 540
BstKTI GATC 3 cut(s) 288, 439, 505
BstMAI GTCTC 2 cut(s) 136, 466
BstMBI GATC 3 cut(s) 285, 436, 502
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 2 cut(s) 234, 457
BstSCI CCNGG 2 cut(s) 300, 407
BstV1I GCAGC 4 cut(s) 244, 246, 247, 462
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 3 cut(s) 232, 337, 455
CfoI GCGC 2 cut(s) 309, 540
Cfr10I RCCGGY 1 cut(s) 107
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 177, 231, 454
CviJI RGCY 8 cut(s) 42, 90, 107, 237, 245, 329, 365, 511
CviKI_1 RGCY 8 cut(s) 42, 90, 107, 237, 245, 329, 365, 511
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 1 cut(s) 539
DpnI GATC 3 cut(s) 287, 438, 504
DpnII GATC 3 cut(s) 285, 436, 502
EaeI YGGCCR 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 407
EgeI GGCGCC 1 cut(s) 539
EheI GGCGCC 1 cut(s) 539
FaeI CATG 3 cut(s) 180, 234, 457
FaqI GGGAC 1 cut(s) 536
FatI CATG 3 cut(s) 176, 230, 453
Fnu4HI GCNGC 4 cut(s) 235, 258, 261, 451
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 4 cut(s) 235, 258, 261, 451
FspBI CTAG 3 cut(s) 375, 512, 606
GlaI GCGC 2 cut(s) 308, 539
GluI GCNGC 4 cut(s) 235, 258, 261, 451
GsuI CTGGAG 2 cut(s) 209, 513
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 108, 301
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 309, 540
Hin1I GRCGYC 1 cut(s) 538
Hin1II CATG 3 cut(s) 180, 234, 457
Hin6I GCGC 2 cut(s) 307, 538
HinP1I GCGC 2 cut(s) 307, 538
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 378
HpaII CCGG 2 cut(s) 108, 301
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 292, 371
Hpy188I TCNGA 3 cut(s) 225, 481, 507
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 292, 371
HpyAV CCTTC 3 cut(s) 154, 486, 526
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 4, 230, 234, 395, 421, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 538
Hsp92II CATG 3 cut(s) 180, 234, 457
HspAI GCGC 2 cut(s) 307, 538
KasI GGCGCC 1 cut(s) 537
Kzo9I GATC 3 cut(s) 285, 436, 502
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 28, 89, 121, 173, 314, 394, 421, 477
Lsp1109I GCAGC 4 cut(s) 244, 246, 247, 462
LweI GCATC 1 cut(s) 322
MaeI CTAG 3 cut(s) 375, 512, 606
MalI GATC 3 cut(s) 287, 438, 504
MboI GATC 3 cut(s) 285, 436, 502
MboII GAAGA 4 cut(s) 226, 373, 455, 567
MluCI AATT 5 cut(s) 80, 412, 458, 556, 625
Mly113I GGCGCC 1 cut(s) 538
MnlI CCTC 2 cut(s) 69, 488
MseI TTAA 6 cut(s) 84, 282, 323, 554, 588, 618
MspI CCGG 2 cut(s) 108, 301
MspR9I CCNGG 2 cut(s) 302, 409
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 306
NarI GGCGCC 1 cut(s) 538
NciI CCSGG 1 cut(s) 302
NdeII GATC 3 cut(s) 285, 436, 502
NlaIII CATG 3 cut(s) 180, 234, 457
NlaIV GGNNCC 1 cut(s) 539
NspI RCATGY 2 cut(s) 234, 457
NspV TTCGAA 1 cut(s) 530
PaeI GCATGC 2 cut(s) 234, 457
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 407
PkrI GCNGC 4 cut(s) 236, 259, 262, 452
PluTI GGCGCC 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 539
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 6 cut(s) 84, 282, 323, 554, 588, 618
SatI GCNGC 4 cut(s) 235, 258, 261, 451
Sau3AI GATC 3 cut(s) 285, 436, 502
ScrFI CCNGG 2 cut(s) 302, 409
SfaNI GCATC 1 cut(s) 322
SfoI GGCGCC 1 cut(s) 539
SfuI TTCGAA 1 cut(s) 530
SphI GCATGC 2 cut(s) 234, 457
Sse9I AATT 5 cut(s) 80, 412, 458, 556, 625
SspDI GGCGCC 1 cut(s) 537
SspMI CTAG 3 cut(s) 375, 512, 606
StyD4I CCNGG 2 cut(s) 300, 407
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 530
TasI AATT 5 cut(s) 80, 412, 458, 556, 625
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 6 cut(s) 84, 282, 323, 554, 588, 618
Tru9I TTAA 6 cut(s) 84, 282, 323, 554, 588, 618
TseI GCWGC 4 cut(s) 234, 257, 260, 450
TspDTI ATGAA 1 cut(s) 63
XapI RAATTY 3 cut(s) 80, 412, 556
XceI RCATGY 2 cut(s) 234, 457
XspI CTAG 3 cut(s) 375, 512, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.