Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009001.1

Orthogroup ID

OG0008398

Physical Location & Seq

Genomic Coordinates Reverse (-)

8883 .. 11699

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009001.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggcgacggacccaaaaccaagacggctgaagggtcacaaggccaccgccacgtgttgtatcgcctcagttgccacccctggcctcgttgccactgccgccgaggatggttgtgtttgctggtttgatatgagatgcaaagaagtgatagagactatggaggcgggaaaggaagctgttacatcgttatgcttcaagccagggaatgaaaatgttgtatatttgtcatcggggaaggaagttaagagctttgatgtgcgtctggggagttcttgctcgtggaaggcgctggagagttttgagtataataaagaggagataaatcagattgcatgcagctctaaggcttcttttcttgctgctgccgatgatggcggtgatattaagattgttgacattcgccagcagcgcatttataaaacattaagagctgatactggtcatacaagtatatgtagcagcgtgcaatttctcccttggagaccttgggaagttattactggaggtctcgattcgaagctagtgatgtgggacttttccaaggggcgcccaaacaaaataataaattttggtttgtctgatgtaaataatggtggtgagcagtgtcttaatcctgcctttgtccatgcaatagcagttccagaaattgatatgttagacatatcagacaaggtttgtgttgtggctcggggggatggtgcagttgacgtgattaatattgaagctgaacttgattctgtaaggtcgaaaggttctacaaaacctcggaaaggatctcaatcaagatccaaaaacaccgatctggaaatccaagatcaaaatagaaggaatagattgcatttggattactcatcaggcggtcatactgctgctgtgtcttgcgtggcattttcgttatttggggaaagaggaagatttataatttcaggcggaaacgacaagctggtaaaggtctgggattggaccaggtatcttgatgcagaacaaactagcggcagtggtgatcttctacatttgaatatcgaccacagcaaaaaagtcaactggctgtgtaccactccaggtgatgtggaaaacctagttgtttgtgatacaactaaggtggtaaaggtctactctgttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

375

Amino Acids

41.02

Weight (kDa)

6.41

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45760 AT5G45760
fragaria_vesca	FvH4_1g07520 FvH4_1g07520 FvH4_1g07520 FvH4_3g07410
malus_domestica	MD05G1296500.v1.1
prunus_persica	Prupe.4G065800_v2.0.a1
pyrus_communis	pycom05g27500
rosa_chinensis	RchiOBHm_Chr5g0011451 RchiOBHm_Chr5g0011471
rosa_laevigata	RLG00000031836
rosa_multiflora	Rmu_co8262969.1_g000001 Rmu_sc0009001.1_g000002 Rmu_sc0009975.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064980 Rroxscaffold_1G00064990
rosa_rugosa	Rorug04G0457100
rosa_samantha	Rh5AG089000 Rh5BG084200 Rh5CG097700 Rh5CG097900 Rh5DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	417, 920
AccB1I	GGYRCC	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	1113
AciI	CCGC	7 cut(s)	48, 99, 164, 375, 858, 930, 993
AclWI	GGATC	2 cut(s)	780, 781
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	50
AcvI	CACGTG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	1 cut(s)	1054
AfiI	CCNNNNNNNGG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	196, 722, 1018
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	4 cut(s)	79, 199, 965, 1060
AluBI	AGCT	7 cut(s)	176, 249, 339, 431, 520, 725, 943
AluI	AGCT	7 cut(s)	176, 249, 339, 431, 520, 725, 943
Alw26I	GTCTC	3 cut(s)	146, 475, 512
AlwI	GGATC	2 cut(s)	780, 781
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	2 cut(s)	42, 82
ApeKI	GCWGC	6 cut(s)	336, 359, 362, 406, 459, 869
ApoI	RAATTY	1 cut(s)	565
AseI	ATTAAT	1 cut(s)	714
AspLEI	GCGC	3 cut(s)	289, 411, 549
AspS9I	GGNCC	2 cut(s)	10, 963
AsuHPI	GGTGA	4 cut(s)	389, 608, 1013, 1076
AsuII	TTCGAA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	2 cut(s)	10, 963
BanI	GGYRCC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	346, 348, 349, 418, 471, 856
BccI	CCATC	3 cut(s)	101, 365, 689
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	4 cut(s)	81, 201, 967, 1062
BcoDI	GTCTC	3 cut(s)	146, 475, 512
BfaI	CTAG	3 cut(s)	521, 990, 1079
BfoI	RGCGCY	2 cut(s)	290, 550
BisI	GCNGC	8 cut(s)	99, 337, 360, 363, 407, 460, 870, 994
BlsI	GCNGC	8 cut(s)	100, 338, 361, 364, 408, 461, 871, 995
Bme1390I	CCNGG	4 cut(s)	81, 201, 967, 1062
Bme18I	GGWCC	2 cut(s)	10, 963
BmeT110I	CYCGRG	1 cut(s)	687
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	2 cut(s)	10, 963
BmiI	GGNNCC	2 cut(s)	12, 548
BmrFI	CCNGG	4 cut(s)	81, 201, 967, 1062
BmsI	GCATC	2 cut(s)	125, 967
BpmI	CTGGAG	3 cut(s)	311, 522, 1044
Bpu14I	TTCGAA	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	778
BsaHI	GRCGYC	1 cut(s)	547
BsaI	GGTCTC	2 cut(s)	475, 512
BsaJI	CCNNGG	7 cut(s)	79, 102, 200, 476, 485, 540, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse1I	ACTGG	3 cut(s)	442, 505, 1049
Bse8I	GATNNNNATC	1 cut(s)	778
BseBI	CCWGG	4 cut(s)	81, 201, 967, 1062
BseDI	CCNNGG	7 cut(s)	79, 102, 200, 476, 485, 540, 764
BseGI	GGATG	2 cut(s)	112, 700
BseJI	GATNNNNATC	1 cut(s)	778
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	442, 505, 1049
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	6 cut(s)	346, 348, 349, 418, 471, 856
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	44, 84
BshNI	GGYRCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	3 cut(s)	146, 475, 512
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	44, 84
Bso31I	GGTCTC	2 cut(s)	475, 512
BsoBI	CYCGRG	1 cut(s)	687
Bsp119I	TTCGAA	1 cut(s)	515
Bsp143I	GATC	5 cut(s)	773, 785, 799, 814, 1003
BspACI	CCGC	7 cut(s)	48, 99, 164, 375, 858, 930, 993
BspANI	GGCC	2 cut(s)	44, 84
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	12, 548
BspPI	GGATC	2 cut(s)	780, 781
BspT104I	TTCGAA	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	2 cut(s)	475, 512
BsrI	ACTGG	3 cut(s)	442, 505, 1049
BssECI	CCNNGG	7 cut(s)	79, 102, 200, 476, 485, 540, 764
BssMI	GATC	5 cut(s)	773, 785, 799, 814, 1003
BssNI	GRCGYC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	3 cut(s)	476, 485, 540
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	4 cut(s)	81, 201, 967, 1062
BstACI	GRCGYC	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	334, 404, 464
BstDEI	CTNAG	3 cut(s)	67, 342, 1098
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	2 cut(s)	112, 700
BstH2I	RGCGCY	2 cut(s)	290, 550
BstHHI	GCGC	3 cut(s)	289, 411, 549
BstKTI	GATC	5 cut(s)	776, 788, 802, 817, 1006
BstMAI	GTCTC	3 cut(s)	146, 475, 512
BstMBI	GATC	5 cut(s)	773, 785, 799, 814, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 98, 408
BstNI	CCWGG	4 cut(s)	81, 201, 967, 1062
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	4 cut(s)	79, 199, 965, 1060
BstV1I	GCAGC	6 cut(s)	346, 348, 349, 418, 471, 856
BstX2I	RGATCY	2 cut(s)	773, 785
BstYI	RGATCY	2 cut(s)	773, 785
BsuRI	GGCC	2 cut(s)	44, 84
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	2 cut(s)	112, 700
BtsI	GCAGTG	3 cut(s)	93, 608, 1003
BtsIMutI	CAGTG	3 cut(s)	93, 608, 1003
Cac8I	GCNNGC	3 cut(s)	334, 404, 464
CfoI	GCGC	3 cut(s)	289, 411, 549
Cfr13I	GGNCC	2 cut(s)	10, 963
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	965
Csp6I	GTAC	1 cut(s)	1053
CspCI	CAANNNNNGTGG	2 cut(s)	1083, 1118
CviAII	CATG	2 cut(s)	333, 626
CviQI	GTAC	1 cut(s)	1053
DdeI	CTNAG	3 cut(s)	67, 342, 1098
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	5 cut(s)	775, 787, 801, 816, 1005
DpnII	GATC	5 cut(s)	773, 785, 799, 814, 1003
EciI	GGCGGA	1 cut(s)	945
Eco130I	CCWWGG	3 cut(s)	476, 485, 540
Eco31I	GGTCTC	2 cut(s)	475, 512
Eco47I	GGWCC	2 cut(s)	10, 963
Eco57I	CTGAAG	1 cut(s)	50
Eco72I	CACGTG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	687
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRII	CCWGG	4 cut(s)	79, 199, 965, 1060
EcoT14I	CCWWGG	3 cut(s)	476, 485, 540
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
ErhI	CCWWGG	3 cut(s)	476, 485, 540
FaeI	CATG	2 cut(s)	336, 629
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	2 cut(s)	332, 625
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	8 cut(s)	99, 337, 360, 363, 407, 460, 870, 994
FokI	GGATG	2 cut(s)	119, 707
Fsp4HI	GCNGC	8 cut(s)	99, 337, 360, 363, 407, 460, 870, 994
FspBI	CTAG	3 cut(s)	521, 990, 1079
GlaI	GCGC	3 cut(s)	288, 410, 548
GluI	GCNGC	8 cut(s)	99, 337, 360, 363, 407, 460, 870, 994
GsuI	CTGGAG	3 cut(s)	311, 522, 1044
HaeII	RGCGCY	2 cut(s)	290, 550
HaeIII	GGCC	2 cut(s)	44, 84
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	3 cut(s)	289, 411, 549
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	2 cut(s)	336, 629
Hin6I	GCGC	3 cut(s)	287, 409, 547
HinP1I	GCGC	3 cut(s)	287, 409, 547
HincII	GTYRAC	3 cut(s)	394, 706, 1042
HindII	GTYRAC	3 cut(s)	394, 706, 1042
HinfI	GANTC	2 cut(s)	512, 734
HphI	GGTGA	4 cut(s)	389, 608, 1013, 1076
Hpy166II	GTNNAC	5 cut(s)	394, 706, 1042, 1053, 1114
Hpy188I	TCNGA	4 cut(s)	327, 580, 667, 768
Hpy188III	TCNNGA	5 cut(s)	509, 641, 783, 803, 974
Hpy8I	GTNNAC	5 cut(s)	394, 706, 1042, 1053, 1114
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	25, 229, 277, 819
HpyCH4IV	ACGT	2 cut(s)	53, 708
HpyCH4V	TGCA	9 cut(s)	138, 332, 336, 466, 629, 701, 838, 980, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 98, 408
HpyF3I	CTNAG	3 cut(s)	67, 342, 1098
HpySE526I	ACGT	2 cut(s)	53, 708
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	336, 629
HspAI	GCGC	3 cut(s)	287, 409, 547
KasI	GGCGCC	1 cut(s)	546
Kzo9I	GATC	5 cut(s)	773, 785, 799, 814, 1003
Lsp1109I	GCAGC	6 cut(s)	346, 348, 349, 418, 471, 856
LweI	GCATC	2 cut(s)	125, 967
MabI	ACCWGGT	1 cut(s)	965
MaeI	CTAG	3 cut(s)	521, 990, 1079
MaeII	ACGT	2 cut(s)	53, 708
MaeIII	GTNAC	2 cut(s)	35, 178
MalI	GATC	5 cut(s)	775, 787, 801, 816, 1005
MboI	GATC	5 cut(s)	773, 785, 799, 814, 1003
MboII	GAAGA	2 cut(s)	924, 998
MflI	RGATCY	2 cut(s)	773, 785
MluCI	AATT	4 cut(s)	467, 565, 645, 921
Mly113I	GGCGCC	1 cut(s)	547
MnlI	CCTC	8 cut(s)	76, 95, 97, 154, 307, 497, 774, 902
MseI	TTAA	5 cut(s)	243, 384, 425, 609, 714
MslI	CAYNNNNRTG	1 cut(s)	187
MspR9I	CCNGG	4 cut(s)	81, 201, 967, 1062
MvaI	CCWGG	4 cut(s)	81, 201, 967, 1062
MwoI	GCNNNNNNNGC	3 cut(s)	71, 98, 408
NarI	GGCGCC	1 cut(s)	547
NdeII	GATC	5 cut(s)	773, 785, 799, 814, 1003
NlaIII	CATG	2 cut(s)	336, 629
NlaIV	GGNNCC	2 cut(s)	12, 548
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	512, 734
PkrI	GCNGC	8 cut(s)	100, 338, 361, 364, 408, 461, 871, 995
PluTI	GGCGCC	1 cut(s)	550
PmaCI	CACGTG	1 cut(s)	54
PmlI	CACGTG	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	2 cut(s)	417, 920
Psp6I	CCWGG	4 cut(s)	79, 199, 965, 1060
PspCI	CACGTG	1 cut(s)	54
PspGI	CCWGG	4 cut(s)	79, 199, 965, 1060
PspN4I	GGNNCC	2 cut(s)	12, 548
PspPI	GGNCC	2 cut(s)	10, 963
PsuI	RGATCY	2 cut(s)	773, 785
RsaI	GTAC	1 cut(s)	1054
RsaNI	GTAC	1 cut(s)	1053
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	5 cut(s)	243, 384, 425, 609, 714
SatI	GCNGC	8 cut(s)	99, 337, 360, 363, 407, 460, 870, 994
Sau3AI	GATC	5 cut(s)	773, 785, 799, 814, 1003
Sau96I	GGNCC	2 cut(s)	10, 963
ScrFI	CCNGG	4 cut(s)	81, 201, 967, 1062
SexAI	ACCWGGT	1 cut(s)	965
SfaNI	GCATC	2 cut(s)	125, 967
SfoI	GGCGCC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	2 cut(s)	10, 963
SmiMI	CAYNNNNRTG	1 cut(s)	187
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	4 cut(s)	467, 565, 645, 921
SsiI	CCGC	7 cut(s)	48, 99, 164, 375, 858, 930, 993
SspDI	GGCGCC	1 cut(s)	546
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	3 cut(s)	521, 990, 1079
StyD4I	CCNGG	4 cut(s)	79, 199, 965, 1060
StyI	CCWWGG	3 cut(s)	476, 485, 540
TaiI	ACGT	2 cut(s)	56, 711
TaqI	TCGA	4 cut(s)	510, 515, 746, 1023
TasI	AATT	4 cut(s)	467, 565, 645, 921
TauI	GCSGC	2 cut(s)	101, 996
TfiI	GAWTC	2 cut(s)	512, 734
Tru1I	TTAA	5 cut(s)	243, 384, 425, 609, 714
Tru9I	TTAA	5 cut(s)	243, 384, 425, 609, 714
TscAI	CASTG	3 cut(s)	100, 608, 1003
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	6 cut(s)	336, 359, 362, 406, 459, 869
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	100, 608, 1003
VpaK11BI	GGWCC	2 cut(s)	10, 963
VspI	ATTAAT	1 cut(s)	714
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	1113
XspI	CTAG	3 cut(s)	521, 990, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.