Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262969.1

Orthogroup ID

OG0008398

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 782

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atggcgacggacccaaaaccaagacggctgaagggtcacaaggccaccgccacgtgttgtatcgcctcagttgccacccctggcctcgttgccactgccgccgaggatggttgtgtttgctggtttgatatgagatgcaaagaagtgatagagactatggaggcgggaaaggaagctgttacatcgttatgcttcaagccagggaatgaaaatgttgtatatttgtcatcggggaaggaagttaagagctttgatgtgcgtctggggagttcttgctcgtggaaggcgctggagagttttgagtataataaagaggagataaatcagattgcatgcagctctaaggcttcttttcttgctgctgccgatgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

124

Amino Acids

13.35

Weight (kDa)

5.48

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45760 AT5G45760
fragaria_vesca	FvH4_1g07520 FvH4_1g07520 FvH4_1g07520 FvH4_3g07410
malus_domestica	MD05G1296500.v1.1
prunus_persica	Prupe.4G065800_v2.0.a1
pyrus_communis	pycom05g27500
rosa_chinensis	RchiOBHm_Chr5g0011451 RchiOBHm_Chr5g0011471
rosa_laevigata	RLG00000031836
rosa_multiflora	Rmu_co8262969.1_g000001 Rmu_sc0009001.1_g000002 Rmu_sc0009975.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064980 Rroxscaffold_1G00064990
rosa_rugosa	Rorug04G0457100
rosa_samantha	Rh5AG089000 Rh5BG084200 Rh5CG097700 Rh5CG097900 Rh5DG084200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	48, 99, 164
AcuI	CTGAAG	1 cut(s)	50
AcvI	CACGTG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	79, 199
AluBI	AGCT	3 cut(s)	176, 249, 339
AluI	AGCT	3 cut(s)	176, 249, 339
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	42, 82
ApeKI	GCWGC	3 cut(s)	336, 359, 362
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	346, 348, 349
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	81, 201
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	4 cut(s)	99, 337, 360, 363
BlsI	GCNGC	4 cut(s)	100, 338, 361, 364
Bme1390I	CCNGG	2 cut(s)	81, 201
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	81, 201
BmsI	GCATC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	79, 102, 200
BseBI	CCWGG	2 cut(s)	81, 201
BseDI	CCNNGG	3 cut(s)	79, 102, 200
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	346, 348, 349
BshFI	GGCC	2 cut(s)	44, 84
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	44, 84
BspACI	CCGC	3 cut(s)	48, 99, 164
BspANI	GGCC	2 cut(s)	44, 84
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	79, 102, 200
BssSI	CACGAG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	81, 201
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	67, 342
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 98
BstNI	CCWGG	2 cut(s)	81, 201
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	79, 199
BstV1I	GCAGC	3 cut(s)	346, 348, 349
BsuRI	GGCC	2 cut(s)	44, 84
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	248
CviAII	CATG	1 cut(s)	333
CviJI	RGCY	8 cut(s)	28, 44, 84, 176, 199, 249, 339, 347
CviKI_1	RGCY	8 cut(s)	28, 44, 84, 176, 199, 249, 339, 347
DdeI	CTNAG	2 cut(s)	67, 342
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	50
Eco72I	CACGTG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	79, 199
FaeI	CATG	1 cut(s)	336
FaiI	YATR	6 cut(s)	131, 158, 190, 220, 306, 334
FatI	CATG	1 cut(s)	332
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	99, 337, 360, 363
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	99, 337, 360, 363
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	4 cut(s)	99, 337, 360, 363
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	44, 84
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	336
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	327
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	25, 229, 277
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	138, 332, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 98
HpyF3I	CTNAG	2 cut(s)	67, 342
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	336
HspAI	GCGC	1 cut(s)	287
LpnPI	CCDG	7 cut(s)	66, 93, 106, 186, 213, 248, 275
Lsp1109I	GCAGC	3 cut(s)	346, 348, 349
LweI	GCATC	1 cut(s)	125
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	35, 178
MnlI	CCTC	5 cut(s)	76, 95, 97, 154, 307
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	81, 201
MvaI	CCWGG	2 cut(s)	81, 201
MwoI	GCNNNNNNNGC	2 cut(s)	71, 98
NlaIII	CATG	1 cut(s)	336
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	100, 338, 361, 364
PmaCI	CACGTG	1 cut(s)	54
PmlI	CACGTG	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	79, 199
PspCI	CACGTG	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	79, 199
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	4 cut(s)	99, 337, 360, 363
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	81, 201
SetI	ASST	4 cut(s)	56, 178, 251, 341
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	187
SphI	GCATGC	1 cut(s)	336
SsiI	CCGC	3 cut(s)	48, 99, 164
StyD4I	CCNGG	2 cut(s)	79, 199
TaiI	ACGT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	336, 359, 362
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.