Prupe.4G089600_v2.0.a1

U3 small nucleolar RNA-interacting protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
4453454 .. 4457526
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G089600.1

Sequence Viewer

Length: 1572 bp
ATGAAGAACAAGAAAAAAGGAGGCTCAGCTCCCAAGGGACCTAAGGGAGCCAAAAAGAGCAAGACTTACTCTCTCAATGAAGACTCGTTTTTTAGCACTGAATCGAAGAAACGCCGAAAAATCGACCGTGATGAGATAGAGAGCGATTCAGACGACGACTATGGCGTCGTTGGGTCGGATGGGGAGGGCGGTGGAGAGGAAGCTGAGGAGGCTGAGGCTATAGAAGAAACTGCAGATGAGAAGAGGAAGAGGATAGCGCAAGAGTACTTGGAGAAGGTTCGAGGATTAGCAAGGAGGGAGAAGGAAGATGAGGAGGATGAGAGTGATGAAGAAGGTGAGAAGGAAGGCGAGAGAGACTCGCTTGTTGCCAAGATTTTGCAGCAGCAGCAGCTCGAGGACAGTGGCCGAGTTCGCCGTGCCATTGCTTCTAGGGTTCAAAAGCCTGAATCTACTGATGAATTTCGGATCTCAGTGAAGCATCGACAATCTGTTACTGCTGTGGCTCTGTCCGAGGATGACTTCAAGGGCTTCTCAGCTTCTAAGGATGGCACCATTCTTCATTGGGATGTAGATAGTGGGAAAAGTGAAAAGTATCTATGGCCCCGTAATGAAGTATTAAAGTCTCATGGGGTTAAGGATCCACAGGGTCGAGCCACAAAGCATAGTAAACATGTGTTAGCTCTAGCAGTTAGCTCTGATGGTCGGTATTTGGCAAGTGGAGGCTTAGATCGCCATATTCATTTGTGGGATACTCGTACACGAGAGCATATTCAGGCTTTTCCAGGTCATAGAGGCCCCGTTTCATGTTTAACTTTCAGGCAAGGGGCATCAGAACTTTTTTCTGGTTCATATGATCGAACAGTTAAGATATGGAACGTTGAAGGGAGAGCTTACATAGATACATTATTTGGTCACCAAGGAGAAGTATTAAGTATTGATTGCCTACGAAAAGAACGGGTTTTGTCTGTTGGACACGATCGAAGCATGCAGTTATTTAAGGTTCCAGAGGCGTCACGTTTAGTATTCCGTGCCCCTGCATCTTCTTTGGAATGCTGTTGTTTTATTAGCAATGATGACTTCTTATCTGGCTCTGATGATGGAAGTGTTGAGCTTTGGAGCATGCTGCGAAAGAAGCCTGTTTGCATAGTTAAGAATGCTCATCCTTTTTTGGCTGCACGCAAAAATGTTGAACAGAAGGATGGTGATAGAATTCCGAATGGTCACATAGAAAATGGTGACCACACTTCTCAAAGTTATCATTGTTCATCAACATATTCTTGGATCAGTTCAGTCACTGTTTGCAGAGGCAGTGACCTTGCTGCATCAGGAGCTGGTAATGGCTCTGTTCGTTTATGGGCTGTTGAAAGTGAAAGCAGAGCCATGAAGCCCTTACACGACCTCCCTTTGGTTGGATTTGTGAATTCTTTAGCTTTTGCAAAATCTGGAGGATTTCTAGTTGCAGGAGTTGGGAAGGAACCTCGACTAGGAAGGTGGGGACACATCTCATCTGCTCGGAATGGAATTGCAATTCATCCCCTTAAGCTTTCATCAGATGATACAGATAATTTTTAG

Protein Analysis

524

Amino Acids

57.89

Weight (kDa)

6.44

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 548
AciI CCGC 1 cut(s) 189
AclI AACGTT 1 cut(s) 876
AclWI GGATC 4 cut(s) 473, 632, 645, 1289
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 3 cut(s) 458, 1209, 1420
AcyI GRCGYC 2 cut(s) 165, 1010
AfaI GTAC 2 cut(s) 266, 757
AfiI CCNNNNNNNGG 3 cut(s) 1405, 1409, 1484
AflII CTTAAG 1 cut(s) 1538
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 5 cut(s) 437, 523, 881, 1190, 1364
AjnI CCWGG 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 348, 627
AlwI GGATC 4 cut(s) 473, 632, 645, 1289
AlwNI CAGNNNCTG 2 cut(s) 1295, 1331
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 403, 599, 793
ApeKI GCWGC 7 cut(s) 379, 382, 385, 388, 1123, 1172, 1319
ApoI RAATTY 3 cut(s) 458, 1209, 1420
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 38, 600, 794
AsuHPI GGTGA 4 cut(s) 347, 905, 1214, 1247
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 1033
BamHI GGATCC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 548
BauI CACGAG 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 2 cut(s) 204, 213
BbvI GCAGC 7 cut(s) 391, 394, 397, 400, 1110, 1159, 1306
BccI CCATC 5 cut(s) 173, 539, 692, 1091, 1193
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 742
BcoDI GTCTC 2 cut(s) 348, 627
BfaI CTAG 4 cut(s) 429, 683, 1454, 1484
BfmI CTRYAG 2 cut(s) 219, 231
BfrI CTTAAG 1 cut(s) 1538
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 7 cut(s) 380, 383, 386, 389, 1124, 1173, 1320
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 7 cut(s) 381, 384, 387, 390, 1125, 1174, 1321
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 38, 600, 794
BmiI GGNNCC 8 cut(s) 39, 49, 550, 602, 639, 796, 1002, 1476
BmrFI CCNGG 1 cut(s) 783
BmsI GCATC 4 cut(s) 487, 836, 1046, 1331
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 1 cut(s) 1464
Bpu10I CCTNAGC 2 cut(s) 204, 213
Bpu1102I GCTNAGC 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 165, 1010
BsaJI CCNNGG 3 cut(s) 33, 510, 916
BsaXI ACNNNNNCTCC 2 cut(s) 1383, 1413
Bsc4I CCNNNNNNNGG 3 cut(s) 1405, 1409, 1484
Bse21I CCTNAGG 1 cut(s) 42
Bse3DI GCAATG 2 cut(s) 420, 1075
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 3 cut(s) 33, 510, 916
BseGI GGATG 8 cut(s) 184, 322, 520, 550, 571, 1159, 1204, 1531
BseLI CCNNNNNNNGG 3 cut(s) 1405, 1409, 1484
BseMI GCAATG 2 cut(s) 420, 1075
BseMII CTCAG 5 cut(s) 39, 195, 204, 483, 546
BseRI GAGGAG 2 cut(s) 221, 326
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 7 cut(s) 391, 394, 397, 400, 1110, 1159, 1306
BsgI GTGCAG 1 cut(s) 1158
Bsh1285I CGRYCG 2 cut(s) 127, 979
BshFI GGCC 3 cut(s) 405, 601, 795
BshNI GGYRCC 1 cut(s) 548
BsiEI CGRYCG 2 cut(s) 127, 979
BsiHKCI CYCGRG 1 cut(s) 392
BslFI GGGAC 2 cut(s) 51, 1509
BslI CCNNNNNNNGG 3 cut(s) 1405, 1409, 1484
BsmAI GTCTC 2 cut(s) 348, 627
BsmFI GGGAC 2 cut(s) 51, 1509
BsmI GAATGC 2 cut(s) 1055, 1159
BsnI GGCC 3 cut(s) 405, 601, 795
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 1033
Bsp143I GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
Bsp1720I GCTNAGC 1 cut(s) 25
BspACI CCGC 1 cut(s) 189
BspANI GGCC 3 cut(s) 405, 601, 795
BspCNI CTCAG 5 cut(s) 38, 196, 205, 482, 545
BspLI GGNNCC 8 cut(s) 39, 49, 550, 602, 639, 796, 1002, 1476
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 4 cut(s) 473, 632, 645, 1289
BspT107I GGYRCC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 1538
BsrDI GCAATG 2 cut(s) 420, 1075
BssECI CCNNGG 3 cut(s) 33, 510, 916
BssMI GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
BssNI GRCGYC 2 cut(s) 165, 1010
BssSI CACGAG 1 cut(s) 759
BssT1I CCWWGG 2 cut(s) 33, 916
Bst2BI CACGAG 1 cut(s) 759
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 4 cut(s) 128, 401, 862, 1297
Bst6I CTCTTC 2 cut(s) 236, 242
BstACI GRCGYC 2 cut(s) 165, 1010
BstAFI CTTAAG 1 cut(s) 1538
BstC8I GCNNGC 3 cut(s) 986, 1121, 1177
BstDEI CTNAG 8 cut(s) 25, 42, 204, 213, 469, 532, 540, 724
BstEII GGTNACC 2 cut(s) 911, 1235
BstENI CCTNNNNNAGG 1 cut(s) 1482
BstF5I GGATG 8 cut(s) 184, 322, 520, 550, 571, 1159, 1204, 1531
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 6 cut(s) 468, 640, 730, 856, 979, 1284
BstMAI GTCTC 2 cut(s) 348, 627
BstMBI GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
BstMCI CGRYCG 2 cut(s) 127, 979
BstMWI GCNNNNNNNGC 7 cut(s) 209, 385, 388, 411, 729, 1132, 1328
BstNI CCWGG 1 cut(s) 783
BstNSI RCATGY 3 cut(s) 674, 988, 1123
BstPI GGTNACC 2 cut(s) 911, 1235
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 2 cut(s) 219, 231
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 7 cut(s) 391, 394, 397, 400, 1110, 1159, 1306
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 465, 637
BstYI RGATCY 2 cut(s) 465, 637
Bsu36I CCTNAGG 1 cut(s) 42
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 3 cut(s) 405, 601, 795
BtsCI GGATG 8 cut(s) 184, 322, 520, 550, 571, 1159, 1204, 1531
BtsI GCAGTG 1 cut(s) 1315
BtsIMutI CAGTG 5 cut(s) 96, 406, 477, 1293, 1315
Cac8I GCNNGC 3 cut(s) 986, 1121, 1177
CaiI CAGNNNCTG 2 cut(s) 1295, 1331
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 38, 600, 794
CseI GACGC 2 cut(s) 154, 999
Csp6I GTAC 2 cut(s) 265, 756
CviAII CATG 6 cut(s) 626, 671, 804, 985, 1120, 1381
CviQI GTAC 2 cut(s) 265, 756
DdeI CTNAG 8 cut(s) 25, 42, 204, 213, 469, 532, 540, 724
DpnI GATC 6 cut(s) 467, 639, 729, 855, 978, 1283
DpnII GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 236, 242
EarI CTCTTC 2 cut(s) 236, 242
Eco130I CCWWGG 2 cut(s) 33, 916
Eco47I GGWCC 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 392
Eco91I GGTNACC 2 cut(s) 911, 1235
EcoNI CCTNNNNNAGG 1 cut(s) 1482
EcoO109I RGGNCCY 2 cut(s) 38, 794
EcoO65I GGTNACC 2 cut(s) 911, 1235
EcoRI GAATTC 2 cut(s) 1209, 1420
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 33, 916
ErhI CCWWGG 2 cut(s) 33, 916
FaeI CATG 6 cut(s) 629, 674, 807, 988, 1123, 1384
FaqI GGGAC 2 cut(s) 51, 1509
FatI CATG 6 cut(s) 625, 670, 803, 984, 1119, 1380
FauNDI CATATG 1 cut(s) 850
Fnu4HI GCNGC 7 cut(s) 380, 383, 386, 389, 1124, 1173, 1320
FokI GGATG 8 cut(s) 191, 329, 527, 557, 578, 1146, 1211, 1518
Fsp4HI GCNGC 7 cut(s) 380, 383, 386, 389, 1124, 1173, 1320
FspBI CTAG 4 cut(s) 429, 683, 1454, 1484
GlaI GCGC 1 cut(s) 258
GluI GCNGC 7 cut(s) 380, 383, 386, 389, 1124, 1173, 1320
GsuI CTGGAG 1 cut(s) 1464
HaeIII GGCC 3 cut(s) 405, 601, 795
HgaI GACGC 2 cut(s) 154, 999
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 2 cut(s) 165, 1010
Hin1II CATG 6 cut(s) 629, 674, 807, 988, 1123, 1384
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 1541
HinfI GANTC 5 cut(s) 83, 101, 146, 356, 446
HphI GGTGA 4 cut(s) 347, 905, 1214, 1247
Hpy166II GTNNAC 2 cut(s) 668, 758
Hpy188III TCNNGA 3 cut(s) 1004, 1326, 1443
Hpy8I GTNNAC 2 cut(s) 668, 758
Hpy99I CGWCG 2 cut(s) 158, 170
HpyAV CCTTC 9 cut(s) 268, 295, 326, 334, 338, 875, 1189, 1465, 1482
HpyCH4III ACNGT 4 cut(s) 128, 401, 862, 1297
HpyCH4IV ACGT 2 cut(s) 876, 1015
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 385, 388, 411, 729, 1132, 1328
HpyF3I CTNAG 8 cut(s) 25, 42, 204, 213, 469, 532, 540, 724
HpySE526I ACGT 2 cut(s) 876, 1015
Hsp92I GRCGYC 2 cut(s) 165, 1010
Hsp92II CATG 6 cut(s) 629, 674, 807, 988, 1123, 1384
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
LmnI GCTCC 4 cut(s) 34, 47, 1116, 1328
Lsp1109I GCAGC 7 cut(s) 391, 394, 397, 400, 1110, 1159, 1306
LweI GCATC 4 cut(s) 487, 836, 1046, 1331
MaeI CTAG 4 cut(s) 429, 683, 1454, 1484
MaeII ACGT 2 cut(s) 876, 1015
MaeIII GTNAC 7 cut(s) 490, 911, 1011, 1220, 1235, 1291, 1310
MalI GATC 6 cut(s) 467, 639, 729, 855, 978, 1283
MboI GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
MflI RGATCY 2 cut(s) 465, 637
MhlI GDGCHC 1 cut(s) 1033
MluCI AATT 6 cut(s) 458, 1209, 1420, 1521, 1527, 1564
MlyI GAGTC 2 cut(s) 77, 350
MmeI TCCRAC 3 cut(s) 156, 949, 1390
MseI TTAA 8 cut(s) 617, 633, 809, 864, 929, 996, 1149, 1539
MslI CAYNNNNRTG 1 cut(s) 564
MspCI CTTAAG 1 cut(s) 1538
MspR9I CCNGG 1 cut(s) 783
Mva1269I GAATGC 2 cut(s) 1055, 1159
MvaI CCWGG 1 cut(s) 783
MwoI GCNNNNNNNGC 7 cut(s) 209, 385, 388, 411, 729, 1132, 1328
NdeI CATATG 1 cut(s) 850
NdeII GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
NlaIII CATG 6 cut(s) 629, 674, 807, 988, 1123, 1384
NlaIV GGNNCC 8 cut(s) 39, 49, 550, 602, 639, 796, 1002, 1476
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 6 cut(s) 911, 1011, 1220, 1235, 1291, 1310
NspI RCATGY 3 cut(s) 674, 988, 1123
PaeI GCATGC 2 cut(s) 988, 1123
PaeR7I CTCGAG 1 cut(s) 392
PciI ACATGT 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 2 cut(s) 1055, 1159
PfeI GAWTC 3 cut(s) 101, 146, 446
PkrI GCNGC 7 cut(s) 381, 384, 387, 390, 1125, 1174, 1321
Ple19I CGATCG 1 cut(s) 979
PleI GAGTC 2 cut(s) 77, 350
PpsI GAGTC 2 cut(s) 77, 350
PpuMI RGGWCCY 1 cut(s) 38
PscI ACATGT 1 cut(s) 670
Psp1406I AACGTT 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 781
PspEI GGTNACC 2 cut(s) 911, 1235
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 8 cut(s) 39, 49, 550, 602, 639, 796, 1002, 1476
PspPI GGNCC 3 cut(s) 38, 600, 794
PspPPI RGGWCCY 1 cut(s) 38
PspXI VCTCGAGB 1 cut(s) 392
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 2 cut(s) 1295, 1331
PsuI RGATCY 2 cut(s) 465, 637
PvuI CGATCG 1 cut(s) 979
RsaI GTAC 2 cut(s) 266, 757
RsaNI GTAC 2 cut(s) 265, 756
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 8 cut(s) 617, 633, 809, 864, 929, 996, 1149, 1539
SatI GCNGC 7 cut(s) 380, 383, 386, 389, 1124, 1173, 1320
Sau3AI GATC 6 cut(s) 465, 637, 727, 853, 976, 1281
Sau96I GGNCC 3 cut(s) 38, 600, 794
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 2 cut(s) 77, 350
ScrFI CCNGG 1 cut(s) 783
SduI GDGCHC 1 cut(s) 1033
SfaNI GCATC 4 cut(s) 487, 836, 1046, 1331
SfcI CTRYAG 2 cut(s) 219, 231
Sfr274I CTCGAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 392, 1538
SmoI CTYRAG 2 cut(s) 392, 1538
SphI GCATGC 2 cut(s) 988, 1123
Sse9I AATT 6 cut(s) 458, 1209, 1420, 1521, 1527, 1564
SsiI CCGC 1 cut(s) 189
SspMI CTAG 4 cut(s) 429, 683, 1454, 1484
StyD4I CCNGG 1 cut(s) 781
StyI CCWWGG 2 cut(s) 33, 916
TaaI ACNGT 4 cut(s) 128, 401, 862, 1297
TaiI ACGT 2 cut(s) 879, 1018
TaqI TCGA 9 cut(s) 104, 123, 280, 393, 481, 649, 856, 979, 1480
TasI AATT 6 cut(s) 458, 1209, 1420, 1521, 1527, 1564
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 3 cut(s) 101, 146, 446
Tru1I TTAA 8 cut(s) 617, 633, 809, 864, 929, 996, 1149, 1539
Tru9I TTAA 8 cut(s) 617, 633, 809, 864, 929, 996, 1149, 1539
TscAI CASTG 5 cut(s) 103, 406, 477, 1300, 1315
TseFI GTSAC 6 cut(s) 911, 1011, 1220, 1235, 1291, 1310
TseI GCWGC 7 cut(s) 379, 382, 385, 388, 1123, 1172, 1319
Tsp45I GTSAC 6 cut(s) 911, 1011, 1220, 1235, 1291, 1310
TspGWI ACGGA 1 cut(s) 1016
TspRI CASTG 5 cut(s) 103, 406, 477, 1300, 1315
Vha464I CTTAAG 1 cut(s) 1538
VpaK11BI GGWCC 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 1482
XapI RAATTY 3 cut(s) 458, 1209, 1420
XceI RCATGY 3 cut(s) 674, 988, 1123
XhoI CTCGAG 1 cut(s) 392
XspI CTAG 4 cut(s) 429, 683, 1454, 1484
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.