Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012065

Physical Location & Seq

Genomic Coordinates Forward (+)

23708836 .. 23709752

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGAACAAGAAGAGAGGCGGCGGCTCAGCTCCCAAGGGACCCAAAAAGGGCAAGGCTTTCTCTCTCGACGAAGATCCCTTCTTCGGCACCGAATCCAAGAAGCGCCGGAAAGTCGAGCGCGATGAGATTGAGAGCGAATCCGACGACGACTACGGGGCCGTCGGGTCGGACGGCGAGGGCGGCGGAGAGGAGGCCGACGAGGAGGAGGATGCTATAGTGGAAACGGCAGACGAGAAGAGGAATAGGCTGGCTCATGAGTTCTTGGAGAACACTCGGGAGCTGCTGAGGAGGGCCAAGGAAGATGATGAGGATGATGATAGCGGTGAAGAGGGTGTGAAGGAAGGCGAGATGGACTCGCTTGTTGGGAAGATGTTGCAGCAGCAGCAGCTCGAGGACAGCGGCCGAGCTCGCCGTGCCATTGCTTCTAGTCGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030515 GO:0030684 GO:0031428 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048316 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051704 GO:0060321 GO:0061458 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

147

Amino Acids

16.14

Weight (kDa)

4.64

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05410 AT4G21130
fragaria_vesca	FvH4_3g09990
malus_domestica	MD05G1274300.v1.1 MD10G1254000.v1.1
prunus_persica	Prupe.4G089600_v2.0.a1
pyrus_communis	pycom05g25570 pycom05g25580 pycom10g20960 pycom10g20970
rosa_chinensis	RchiOBHm_Chr5g0015871
rosa_laevigata	RLG00000032227
rosa_roxburghii	Rroxscaffold_1G00060730
rosa_rugosa	Rorug05G0029700
rosa_samantha	Rh5AG123300 Rh5BG122200 Rh5CG133400 Rh5DG121600
rosa_wichuraiana	Rw5G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	123
AciI	CCGC	6 cut(s)	21, 24, 183, 186, 324, 402
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	50, 86
AluBI	AGCT	4 cut(s)	32, 283, 391, 410
AluI	AGCT	4 cut(s)	32, 283, 391, 410
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	2 cut(s)	276, 392
AoxI	GGCC	4 cut(s)	159, 195, 294, 403
ApeKI	GCWGC	5 cut(s)	283, 379, 382, 385, 388
AspLEI	GCGC	2 cut(s)	108, 123
AspS9I	GGNCC	3 cut(s)	41, 159, 294
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	2 cut(s)	276, 392
AvaII	GGWCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	5 cut(s)	270, 391, 394, 397, 400
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	4 cut(s)	146, 190, 243, 399
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	9 cut(s)	22, 25, 184, 284, 380, 383, 386, 389, 403
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	9 cut(s)	23, 26, 185, 285, 381, 384, 387, 390, 404
Bme18I	GGWCC	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	276, 392
BmgT120I	GGNCC	3 cut(s)	41, 159, 294
BmiI	GGNNCC	4 cut(s)	42, 43, 91, 160
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	36, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 86
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	36, 297
BseGI	GGATG	2 cut(s)	217, 319
BseLI	CCNNNNNNNGG	2 cut(s)	50, 86
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	42, 278
BseRI	GAGGAG	4 cut(s)	206, 218, 221, 304
BseX3I	CGGCCG	1 cut(s)	403
BseXI	GCAGC	5 cut(s)	270, 391, 394, 397, 400
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	4 cut(s)	161, 197, 296, 405
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	2 cut(s)	276, 392
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	50, 86
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	4 cut(s)	161, 197, 296, 405
BsoBI	CYCGRG	2 cut(s)	276, 392
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	6 cut(s)	21, 24, 183, 186, 324, 402
BspANI	GGCC	4 cut(s)	161, 197, 296, 405
BspCNI	CTCAG	2 cut(s)	41, 279
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	42, 43, 91, 160
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	36, 297
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	36, 297
Bst6I	CTCTTC	3 cut(s)	8, 233, 324
BstC8I	GCNNGC	2 cut(s)	252, 412
BstDEI	CTNAG	2 cut(s)	28, 287
BstF5I	GGATG	2 cut(s)	217, 319
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 123
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	5 cut(s)	183, 385, 388, 411, 416
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	270, 391, 394, 397, 400
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	161, 197, 296, 405
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	217, 319
Cac8I	GCNNGC	2 cut(s)	252, 412
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	2 cut(s)	108, 123
Cfr13I	GGNCC	3 cut(s)	41, 159, 294
CviAII	CATG	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	28, 287
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	403
EagI	CGGCCG	1 cut(s)	403
Eam1104I	CTCTTC	3 cut(s)	8, 233, 324
EarI	CTCTTC	3 cut(s)	8, 233, 324
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	410
EclXI	CGGCCG	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	36, 297
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	410
Eco88I	CYCGRG	2 cut(s)	276, 392
EcoICRI	GAGCTC	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	36, 297
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	36, 297
FaeI	CATG	1 cut(s)	260
FaiI	YATR	2 cut(s)	218, 258
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	9 cut(s)	22, 25, 184, 284, 380, 383, 386, 389, 403
FokI	GGATG	2 cut(s)	224, 326
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	9 cut(s)	22, 25, 184, 284, 380, 383, 386, 389, 403
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	2 cut(s)	107, 122
GluI	GCNGC	9 cut(s)	22, 25, 184, 284, 380, 383, 386, 389, 403
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	4 cut(s)	161, 197, 296, 405
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	2 cut(s)	108, 123
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	106, 121
HinP1I	GCGC	2 cut(s)	106, 121
HinfI	GANTC	3 cut(s)	95, 140, 356
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	145, 172
Hpy188III	TCNNGA	3 cut(s)	68, 257, 278
Hpy99I	CGWCG	5 cut(s)	74, 149, 152, 167, 203
HpyAV	CCTTC	3 cut(s)	91, 334, 338
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	5 cut(s)	183, 385, 388, 411, 416
HpyF3I	CTNAG	2 cut(s)	28, 287
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	106, 121
KflI	GGGWCCC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	37, 280
LpnPI	CCDG	2 cut(s)	122, 236
Lsp1109I	GCAGC	5 cut(s)	270, 391, 394, 397, 400
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	429
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	8 cut(s)	16, 25, 76, 86, 250, 314, 341, 382
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	150, 168
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	5 cut(s)	183, 385, 388, 411, 416
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	4 cut(s)	42, 43, 91, 160
NmeAIII	GCCGAG	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	95, 140
PkrI	GCNGC	9 cut(s)	23, 26, 185, 285, 381, 384, 387, 390, 404
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	42, 43, 91, 160
PspPI	GGNCC	3 cut(s)	41, 159, 294
PspPPI	RGGWCCY	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	9 cut(s)	22, 25, 184, 284, 380, 383, 386, 389, 403
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	3 cut(s)	41, 159, 294
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	4 cut(s)	34, 285, 393, 412
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	6 cut(s)	21, 24, 183, 186, 324, 402
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	36, 297
TaqI	TCGA	3 cut(s)	69, 117, 393
TauI	GCSGC	4 cut(s)	24, 27, 186, 405
TfiI	GAWTC	2 cut(s)	95, 140
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	5 cut(s)	283, 379, 382, 385, 388
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.