Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012065

Physical Location & Seq

Genomic Coordinates Forward (+)

23709923 .. 23712363

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAGTACTTAAGTCCCATGGGGTCAAGGATCGATCCACAAGGTCGAGCTAAAAAGCATAGTAAACACGTGTTAGCACTAGCAGTTAGCTCTGATGGTCGGTATTTGGCAAGCGGGGGCTTAGATCGCCATGTTCATTTGTGGGATACTCGTACACGAGAGCATATTCTGGCTTTTCCAGGTCACAGGGGCCCCGTTTCATGTTTAACTTTCAGGCAAGGGTCTTCAGAACTTTTTTCTGGTTCATATGATCGATCAGTTAAGATATGGAATGTAGAAGATAGAGCTTACATAAACACATTATTTGGTCATCAAGGGGAAGTATTAAGTATTGATTGCCTACGGAAAGAAAGGGTATTGACTGTTGGACATGATCGAAGCATGCAGTTATTTAAGGTCCCAGAGGAGTCACGTTTAGTATTCCGTGCCCCTGCATCTTCGTTGGAATGTTGTTGTTTTATCAGCAATGACGAATTCTTATCCGGCTCTGATGATGGAAGTGTTGAGCTTTGGAACATGGTGCGGAAGAAGCCTGTTTGCATAGTTAAGAATGCTCATCCTTTATTGGCTGCACACAAAGAAGTCGAACAAAAGGATGGTGATAGAATCCCAAATGGTCACATAGAAAATGGTGACCACACTTCTGAAAGCTTTGATTGTTCATCAACCAATTCTTGGATCAGTTCAGTCACTGTTTGTAGAGGCAGTGACCTCGCTGCATCAGGAGCTGGGAATGGCTCTGTTCGATTATGGGCTATTGAAAGTGAGAGCAGAGTGCTTCGGCCGTTACACAACATCCCATTGGTTGGATTTGTGAATTCTTTAGCTTCTGCAAAATCTGGACGGTTTCTGGTTGCAGGAGTTGGGAAGGAACCTCGTCTAGGAAGGTGGGGACATAACCCAGCTGCTCGTAACGGAATCGCAATCCATTCCATTAAGCTTTCATCAGAAGATACAAACACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030515 GO:0030684 GO:0031428 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048316 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051704 GO:0060321 GO:0061458 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

323

Amino Acids

35.39

Weight (kDa)

8.77

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05410 AT4G21130
fragaria_vesca	FvH4_3g09990
malus_domestica	MD05G1274300.v1.1 MD10G1254000.v1.1
prunus_persica	Prupe.4G089600_v2.0.a1
pyrus_communis	pycom05g25570 pycom05g25580 pycom10g20960 pycom10g20970
rosa_chinensis	RchiOBHm_Chr5g0015871
rosa_laevigata	RLG00000032227
rosa_roxburghii	Rroxscaffold_1G00060730
rosa_rugosa	Rorug05G0029700
rosa_samantha	Rh5AG123300 Rh5BG122200 Rh5CG133400 Rh5DG121600
rosa_wichuraiana	Rw5G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	675, 806
AciI	CCGC	2 cut(s)	114, 523
AclWI	GGATC	3 cut(s)	29, 38, 686
AcoI	YGGCCR	1 cut(s)	782
AcsI	RAATTY	2 cut(s)	473, 817
AcuI	CTGAAG	1 cut(s)	210
AcvI	CACGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	8, 154
AfiI	CCNNNNNNNGG	3 cut(s)	675, 806, 881
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	2 cut(s)	67, 69
AgsI	TTSAA	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	9 cut(s)	50, 90, 287, 508, 651, 728, 827, 905, 940
AluI	AGCT	9 cut(s)	50, 90, 287, 508, 651, 728, 827, 905, 940
AlwI	GGATC	3 cut(s)	29, 38, 686
AlwNI	CAGNNNCTG	2 cut(s)	692, 728
AoxI	GGCC	2 cut(s)	190, 782
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	3 cut(s)	569, 716, 905
ApoI	RAATTY	2 cut(s)	473, 817
AspS9I	GGNCC	3 cut(s)	190, 191, 397
AsuHPI	GGTGA	2 cut(s)	611, 644
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	2 cut(s)	194, 430
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	556, 703, 892
BccI	CCATC	3 cut(s)	89, 488, 590
BceAI	ACGGC	1 cut(s)	769
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	80, 881
BfrI	CTTAAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	570, 717, 906
BlsI	GCNGC	3 cut(s)	571, 718, 907
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	190, 191, 397
BmiI	GGNNCC	5 cut(s)	191, 192, 193, 399, 873
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	443, 728
BpiI	GAAGAC	1 cut(s)	216
Bsa29I	ATCGAT	2 cut(s)	33, 253
BsaAI	YACGTR	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	3 cut(s)	675, 806, 881
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	2 cut(s)	33, 253
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	556, 601, 795
BseLI	CCNNNNNNNGG	3 cut(s)	675, 806, 881
BseMI	GCAATG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	2 cut(s)	194, 430
BseX3I	CGGCCG	1 cut(s)	782
BseXI	GCAGC	3 cut(s)	556, 703, 892
BseYI	CCCAGC	2 cut(s)	728, 901
BsgI	GTGCAG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	785
BshFI	GGCC	2 cut(s)	192, 784
BshVI	ATCGAT	2 cut(s)	33, 253
BsiEI	CGRYCG	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	383, 906
BslI	CCNNNNNNNGG	3 cut(s)	675, 806, 881
BsmFI	GGGAC	2 cut(s)	383, 906
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	192, 784
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	194, 430
Bsp143I	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	114, 523
BspANI	GGCC	2 cut(s)	192, 784
BspDI	ATCGAT	2 cut(s)	33, 253
BspLI	GGNNCC	5 cut(s)	191, 192, 193, 399, 873
BspPI	GGATC	3 cut(s)	29, 38, 686
BspTI	CTTAAG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	364, 694, 846
BstAFI	CTTAAG	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	112, 383
BstDEI	CTNAG	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	632
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstF5I	GGATG	3 cut(s)	556, 601, 795
BstKTI	GATC	7 cut(s)	33, 37, 127, 253, 257, 376, 681
BstMBI	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
BstMCI	CGRYCG	1 cut(s)	785
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 529, 725
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	194, 430
BstV1I	GCAGC	3 cut(s)	556, 703, 892
BstV2I	GAAGAC	1 cut(s)	216
BstZI	CGGCCG	1 cut(s)	782
Bsu15I	ATCGAT	2 cut(s)	33, 253
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	192, 784
BsuTUI	ATCGAT	2 cut(s)	33, 253
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	556, 601, 795
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	2 cut(s)	690, 712
Cac8I	GCNNGC	2 cut(s)	112, 383
CaiI	CAGNNNCTG	2 cut(s)	692, 728
Cfr13I	GGNCC	3 cut(s)	190, 191, 397
ClaI	ATCGAT	2 cut(s)	33, 253
Csp6I	GTAC	2 cut(s)	7, 153
CviAII	CATG	6 cut(s)	19, 131, 201, 371, 382, 517
CviQI	GTAC	2 cut(s)	7, 153
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	7 cut(s)	32, 36, 126, 252, 256, 375, 680
DpnII	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
EaeI	YGGCCR	1 cut(s)	782
EagI	CGGCCG	1 cut(s)	782
EclXI	CGGCCG	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	210
Eco72I	CACGTG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	632
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoO109I	RGGNCCY	3 cut(s)	190, 191, 397
EcoO65I	GGTNACC	1 cut(s)	632
EcoRI	GAATTC	2 cut(s)	473, 817
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	6 cut(s)	22, 134, 204, 374, 385, 520
FaqI	GGGAC	2 cut(s)	383, 906
FatI	CATG	6 cut(s)	18, 130, 200, 370, 381, 516
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	570, 717, 906
FokI	GGATG	3 cut(s)	543, 608, 782
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	570, 717, 906
FspBI	CTAG	2 cut(s)	80, 881
GluI	GCNGC	3 cut(s)	570, 717, 906
GsaI	CCCAGC	2 cut(s)	732, 905
HaeIII	GGCC	2 cut(s)	192, 784
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	6 cut(s)	22, 134, 204, 374, 385, 520
HindIII	AAGCTT	2 cut(s)	649, 938
HinfI	GANTC	3 cut(s)	407, 606, 918
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	611, 644
Hpy166II	GTNNAC	2 cut(s)	65, 155
Hpy188I	TCNGA	5 cut(s)	94, 229, 490, 646, 949
Hpy188III	TCNNGA	2 cut(s)	723, 840
Hpy8I	GTNNAC	2 cut(s)	65, 155
HpyAV	CCTTC	2 cut(s)	862, 879
HpyCH4III	ACNGT	3 cut(s)	364, 694, 846
HpyCH4IV	ACGT	2 cut(s)	69, 412
HpyCH4V	TGCA	7 cut(s)	385, 434, 540, 572, 719, 833, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 529, 725
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	2 cut(s)	69, 412
Hsp92II	CATG	6 cut(s)	22, 134, 204, 374, 385, 520
Kzo9I	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	3 cut(s)	556, 703, 892
LweI	GCATC	2 cut(s)	443, 728
MaeI	CTAG	2 cut(s)	80, 881
MaeII	ACGT	2 cut(s)	69, 412
MaeIII	GTNAC	8 cut(s)	182, 408, 617, 632, 688, 707, 786, 911
MalI	GATC	7 cut(s)	32, 36, 126, 252, 256, 375, 680
MboI	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
MboII	GAAGA	5 cut(s)	216, 290, 429, 538, 962
MhlI	GDGCHC	2 cut(s)	194, 430
MluCI	AATT	3 cut(s)	473, 670, 817
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	3 cut(s)	346, 423, 787
MnlI	CCTC	4 cut(s)	397, 695, 722, 885
MseI	TTAA	7 cut(s)	11, 206, 261, 326, 393, 546, 936
MspA1I	CMGCKG	1 cut(s)	905
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	126, 529, 725
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
NlaIII	CATG	6 cut(s)	22, 134, 204, 374, 385, 520
NlaIV	GGNNCC	5 cut(s)	191, 192, 193, 399, 873
NmuCI	GTSAC	6 cut(s)	182, 408, 617, 632, 688, 707
NspI	RCATGY	1 cut(s)	385
PaeI	GCATGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	606, 918
PflMI	CCANNNNNTGG	2 cut(s)	675, 806
PkrI	GCNGC	3 cut(s)	571, 718, 907
PleI	GAGTC	1 cut(s)	415
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	70
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	2 cut(s)	728, 901
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	5 cut(s)	191, 192, 193, 399, 873
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	190, 191, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	2 cut(s)	692, 728
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	2 cut(s)	8, 154
RsaNI	GTAC	2 cut(s)	7, 153
SaqAI	TTAA	7 cut(s)	11, 206, 261, 326, 393, 546, 936
SatI	GCNGC	3 cut(s)	570, 717, 906
Sau3AI	GATC	7 cut(s)	30, 34, 124, 250, 254, 373, 678
Sau96I	GGNCC	3 cut(s)	190, 191, 397
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	194, 430
SfaNI	GCATC	2 cut(s)	443, 728
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	3 cut(s)	473, 670, 817
SsiI	CCGC	2 cut(s)	114, 523
SspMI	CTAG	2 cut(s)	80, 881
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	364, 694, 846
TaiI	ACGT	2 cut(s)	72, 415
TaqI	TCGA	6 cut(s)	33, 46, 253, 376, 585, 745
TasI	AATT	3 cut(s)	473, 670, 817
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	606, 918
Tru1I	TTAA	7 cut(s)	11, 206, 261, 326, 393, 546, 936
Tru9I	TTAA	7 cut(s)	11, 206, 261, 326, 393, 546, 936
TscAI	CASTG	2 cut(s)	697, 712
TseFI	GTSAC	6 cut(s)	182, 408, 617, 632, 688, 707
TseI	GCWGC	3 cut(s)	569, 716, 905
Tsp45I	GTSAC	6 cut(s)	182, 408, 617, 632, 688, 707
TspDTI	ATGAA	6 cut(s)	17, 125, 189, 234, 651, 933
TspGWI	ACGGA	3 cut(s)	358, 413, 930
TspRI	CASTG	2 cut(s)	697, 712
Van91I	CCANNNNNTGG	2 cut(s)	675, 806
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	879
XapI	RAATTY	2 cut(s)	473, 817
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	2 cut(s)	80, 881
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.