Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012065

Physical Location & Seq

Genomic Coordinates Forward (+)

26921452 .. 26922655

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAGTTATTTAAGGTCCCAGAGGAGTCTCGTTTAGTATTCCGTGCCCCTGCATCTTCTTTGGAATGTTGTTGTTTTATTAGCAATGACGAATTCTTATCCGGCTCTGATGATGGAAGTGTTGAGCTTTGGGACATGCTACGGAAGAAGCCTGTTTGCATAGCTAAGAATGCTCATCCTCTGTTGGCTGCACAGAAAAATGCTGAACCAAAGGATGGTGATAGAATCCCAAATGGTCACATAGAAAATGGTAACCACACTTCTGAAAGTTATGATTGTTCATCAACAAATTCTTGGGTTAGTTCAGTCGCTGTTTGTAGTGGCAGCGACCTTGCTGCAACAGGAGCTGGTAACGGCTCTGTTCGATTATGGGCTATTAAAAGTGAAAGCAAAGTGATTCAGCCGTTACACAACATCCCACTGGTTGGATTTGTGAATTCGTTAGCTTTTGCAAAATCTGGACAGTTTCTAGTTGCAGGAGTCGGGAAGGAACCTCGTCTAGGAAGGTGGGGACTTAACCCGGCTGCTCGGAATGGAATCGCAATTTATTCCCTTAAGCTTTCATCAGAAGATGCAAATACTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007275 GO:0008037 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030515 GO:0030684 GO:0031428 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048316 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051704 GO:0060321 GO:0061458 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

196

Amino Acids

20.83

Weight (kDa)

6.42

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05410 AT4G21130
fragaria_vesca	FvH4_3g09990
malus_domestica	MD05G1274300.v1.1 MD10G1254000.v1.1
prunus_persica	Prupe.4G089600_v2.0.a1
pyrus_communis	pycom05g25570 pycom05g25580 pycom10g20960 pycom10g20970
rosa_chinensis	RchiOBHm_Chr5g0015871
rosa_laevigata	RLG00000032227
rosa_roxburghii	Rroxscaffold_1G00060730
rosa_rugosa	Rorug05G0029700
rosa_samantha	Rh5AG123300 Rh5BG122200 Rh5CG133400 Rh5DG121600
rosa_wichuraiana	Rw5G010640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	215, 425
AcsI	RAATTY	3 cut(s)	92, 289, 436
AfiI	CCNNNNNNNGG	3 cut(s)	215, 425, 500
AflII	CTTAAG	1 cut(s)	554
AluBI	AGCT	5 cut(s)	127, 164, 347, 446, 559
AluI	AGCT	5 cut(s)	127, 164, 347, 446, 559
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	2 cut(s)	311, 347
ApeKI	GCWGC	4 cut(s)	188, 324, 335, 524
ApoI	RAATTY	3 cut(s)	92, 289, 436
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BbvI	GCAGC	4 cut(s)	175, 322, 336, 511
BccI	CCATC	2 cut(s)	107, 209
BceAI	ACGGC	2 cut(s)	370, 388
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	470, 500
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	4 cut(s)	189, 325, 336, 525
BlsI	GCNGC	4 cut(s)	190, 326, 337, 526
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 492
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	62, 562
BpuMI	CCSGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 425, 500
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	175, 220, 414
BseLI	CCNNNNNNNGG	3 cut(s)	215, 425, 500
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	4 cut(s)	175, 322, 336, 511
BsgI	GTGCAG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	102, 521
BslFI	GGGAC	3 cut(s)	2, 146, 525
BslI	CCNNNNNNNGG	3 cut(s)	215, 425, 500
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	3 cut(s)	2, 146, 525
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	18, 492
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	465
BstAFI	CTTAAG	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	175, 220, 414
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 344
BstNSI	RCATGY	1 cut(s)	139
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	175, 322, 336, 511
BtsCI	GGATG	3 cut(s)	175, 220, 414
BtsIMutI	CAGTG	1 cut(s)	419
CaiI	CAGNNNCTG	2 cut(s)	311, 347
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	2 cut(s)	92, 436
FaeI	CATG	1 cut(s)	139
FaiI	YATR	5 cut(s)	137, 161, 242, 273, 370
FaqI	GGGAC	3 cut(s)	2, 146, 525
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	189, 325, 336, 525
FokI	GGATG	3 cut(s)	162, 227, 401
Fsp4HI	GCNGC	4 cut(s)	189, 325, 336, 525
FspBI	CTAG	2 cut(s)	470, 500
GluI	GCNGC	4 cut(s)	189, 325, 336, 525
HapII	CCGG	2 cut(s)	102, 521
Hin1II	CATG	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	26, 225, 397, 480, 537
HpaII	CCGG	2 cut(s)	102, 521
HphI	GGTGA	1 cut(s)	230
Hpy188I	TCNGA	4 cut(s)	109, 265, 531, 568
Hpy188III	TCNNGA	2 cut(s)	459, 484
HpyAV	CCTTC	2 cut(s)	481, 498
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	8 cut(s)	4, 53, 159, 191, 338, 452, 476, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 344
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	4 cut(s)	175, 322, 336, 511
LweI	GCATC	2 cut(s)	62, 562
MaeI	CTAG	2 cut(s)	470, 500
MaeIII	GTNAC	4 cut(s)	236, 251, 350, 405
MboII	GAAGA	3 cut(s)	48, 157, 581
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	4 cut(s)	92, 289, 436, 543
MlyI	GAGTC	2 cut(s)	35, 489
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	3 cut(s)	16, 189, 504
MseI	TTAA	4 cut(s)	12, 378, 516, 555
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	102, 521
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	170, 344
NciI	CCSGG	1 cut(s)	521
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	2 cut(s)	18, 492
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	139
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	225, 397, 537
PflMI	CCANNNNNTGG	2 cut(s)	215, 425
PkrI	GCNGC	4 cut(s)	190, 326, 337, 526
PleI	GAGTC	2 cut(s)	34, 488
PpsI	GAGTC	2 cut(s)	34, 488
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	18, 492
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	311, 347
SaqAI	TTAA	4 cut(s)	12, 378, 516, 555
SatI	GCNGC	4 cut(s)	189, 325, 336, 525
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	35, 489
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	9 cut(s)	18, 129, 166, 333, 349, 448, 496, 509, 561
SfaNI	GCATC	2 cut(s)	62, 562
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	92, 289, 436, 543
SspMI	CTAG	2 cut(s)	470, 500
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	364
TasI	AATT	4 cut(s)	92, 289, 436, 543
TfiI	GAWTC	3 cut(s)	225, 397, 537
Tru1I	TTAA	4 cut(s)	12, 378, 516, 555
Tru9I	TTAA	4 cut(s)	12, 378, 516, 555
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	4 cut(s)	188, 324, 335, 524
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	270, 552
TspGWI	ACGGA	2 cut(s)	32, 157
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	2 cut(s)	215, 425
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	3 cut(s)	92, 289, 436
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	2 cut(s)	470, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.