Prupe.4G097600_v2.0.a1

Pectate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0007639
Physical Location & Seq
Forward (+)
4924615 .. 4925297
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G097600.1

Sequence Viewer

Length: 348 bp
AAAGGTGGTGAGTATTATATTGTCACAGACTCTTCTAATGATGATGCTGTGAATCCAAGGCGGGGCACTCTGAGTTATGCTGTGATACAGACTGAGCCTCTCTGGATTGTGTTCCCTGGCAACATGCTCATCAAGCTCTCCCAAGAGCTCATCTTCAACAGCTACAAAACCCTTGATGGCCGTGGAGCCAATGTCCACATTGTGGGTGGTGGCTGCACCACATTGCAGTTCATAAGCAATGTCATCATCCACAATGTGCATATCCACAACTGTTATCCGTCAGGTGGCACTAACATGCGTTCAAGCCCAACCCACTACGGCTACCGCACAAAATCAGACGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko02024 map00040 map02024
Pfam Domains
Protein Families
Pec_lyase_C

Protein Analysis

116

Amino Acids

12.7

Weight (kDa)

8.0

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AciI CCGC 2 cut(s) 61, 325
AcoI YGGCCR 1 cut(s) 178
AdeI CACNNNGTG 2 cut(s) 202, 256
AfiI CCNNNNNNNGG 3 cut(s) 62, 202, 284
AgsI TTSAA 2 cut(s) 157, 303
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 136, 148, 162
AluI AGCT 3 cut(s) 136, 148, 162
Alw21I GWGCWC 1 cut(s) 150
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 165, 334
BciT130I CCWGG 1 cut(s) 117
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 34
BsaJI CCNNGG 3 cut(s) 56, 115, 181
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 202, 284
Bse3DI GCAATG 2 cut(s) 221, 244
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 56, 115, 181
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 3 cut(s) 62, 202, 284
BseMI GCAATG 2 cut(s) 221, 244
BseMII CTCAG 2 cut(s) 62, 84
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 199
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 3 cut(s) 62, 202, 284
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 68, 150
BspACI CCGC 2 cut(s) 61, 325
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 63, 85
BspLI GGNNCC 1 cut(s) 187
BsrDI GCAATG 2 cut(s) 221, 244
BssECI CCNNGG 3 cut(s) 56, 115, 181
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 71, 93
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 2 cut(s) 127, 298
BstSCI CCNGG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 246
CviAII CATG 2 cut(s) 124, 295
CviJI RGCY 9 cut(s) 97, 136, 148, 162, 180, 188, 213, 306, 321
CviKI_1 RGCY 9 cut(s) 97, 136, 148, 162, 180, 188, 213, 306, 321
DdeI CTNAG 2 cut(s) 71, 93
DraIII CACNNNGTG 2 cut(s) 202, 256
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 127, 298
FaiI YATR 6 cut(s) 18, 78, 125, 233, 261, 296
FatI CATG 2 cut(s) 123, 294
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 2 cut(s) 127, 298
HinfI GANTC 2 cut(s) 29, 52
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 72, 337
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 216, 226, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 71, 93
Hsp92II CATG 2 cut(s) 127, 298
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 88, 102, 129, 267
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 2 cut(s) 24, 145
MhlI GDGCHC 2 cut(s) 68, 150
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 127, 298
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 2 cut(s) 127, 298
PfeI GAWTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 1 cut(s) 214
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 68, 150
SetI ASST 5 cut(s) 7, 138, 150, 164, 286
SfaNI GCATC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 293
SsiI CCGC 2 cut(s) 61, 325
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 272
TfiI GAWTC 1 cut(s) 52
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 202
XceI RCATGY 2 cut(s) 127, 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.