Prupe.7G126700_v2.0.a1

Pectate lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
14799060 .. 14802016
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G126700.1

Sequence Viewer

Length: 1464 bp
ATGGTTCCCAGAACCTGCATTGTCCTGCTCTTTCTTCTCTGCTCATTTTCTTCTCTTGCCACAGCATTCCTCAACCTCACTCTTCCTGGCCAACATCCCAACCCAGAAGAAGTTGTTCAAGAAGTTCATAGGAAGGTTAATGCTTCTTTGGCAAGAAGGCAAATGCTGCAAGGAACCATAAAATACCAGGACTCTTCATGCCTAACAGGAAACCCAATAGATGACTGTTGGAAATGTGACCCAAATTGGCCAAACAACAGGCAGAGCTTAGCAGATTGTGCAATTGGGTTTGGCCAATATGCTCTTGGAGGCAAAGGTGGTGAGTATTATATTGTCACAGACTCTACTGATGATGATGCTGTGAATCCAAGGCCAGGCACACTGAGATATGCTGTGATACAGACTGAGCCTCTCTGGATTGTGTTCCCTGGCAACATGCTCATCAAGCTCTCCCAAGAGCTCATCTTCAACAGCTACAAGACCCTTGATGGCCGTGGAGCCAATGTCCACATTGTGGGTGGTGGCTGCATCACGTTGCAGTTCATAAGCAATGTCATCATCCACAATGTGCATATCCACCACTGTTATCCGTCAGGTGACGCTAATGTGCGTTCAAGCCCAACCCACTACGGCTACCGCACAAAATCAGACGGTGATGGGATCTCCATCTTTGGATCCAAAGACATATGGATAGACCATTGCAGCCTATCACACTGCAAGGATGGTCTGATAGATGCAGTGATGGGGTCCACAGGGATCACAATATCAAACAACTACTTCTCCCACCACAATGAGGTGATGCTTTTGGGACACAGTGATGACTATTTACCTGACACAGGCATGCAAGTGACCATAGCCTTCAATCACTTCGGCGAAGAACTGGTGCAGAGAATGCCAAGGTGCAGAAAAGGCTACATCCATGTGGTCAACAATGACTTTACTCAATGGGAAATGTATGCGATCGGGGGCAGTGGAAATCCTACAATAAATAGCCAAGGCAATAGATATACTGCTCCATCAAACCCTAATGCCAAGGAGGTGACAAAGAGGGTGGAGACAGCGGAAGGGAAGTGGAAGGATTGGAACTGGAGATCAGAGGGGGACATTTTGGTAAACGGAGCATTCTTTGTGGCTTCAGGGAAGGGTGTTGAGTTTAACTATGAGAAGGCCTACAGTGTGGAGCCCAAGTCTGCTGTTCTCATTGACCAGCTCATCATGCATGCTGGTGCCCTTGGAGTTGGTGGCAGGGACAACAACCTGGGGAAGTGGAGCTCTGGATCCAACGGTGACGGAAACGGTTTAGGGTCAGGTCCAGACTATACGGATGACATGTCGGGAAGTAGCAGCAGGAACAATCCACTGCCACTTTCATCCACATCCACCCTCTTCTCCTTTTTTATCTCATTGTCATGCTTGTTATTTTCGTATATTATCCCAGACATGCATTTCACAATGAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

53.58

Weight (kDa)

6.0

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 1226
AccB7I CCANNNNNTGG 1 cut(s) 514
AciI CCGC 2 cut(s) 637, 1061
AclWI GGATC 6 cut(s) 668, 669, 682, 764, 1272, 1285
AcoI YGGCCR 4 cut(s) 88, 248, 292, 490
AcuI CTGAAG 1 cut(s) 1119
AdeI CACNNNGTG 2 cut(s) 514, 568
AfiI CCNNNNNNNGG 4 cut(s) 374, 514, 793, 836
AflIII ACRYGT 1 cut(s) 1329
AgsI TTSAA 4 cut(s) 119, 469, 615, 862
AjnI CCWGG 5 cut(s) 85, 186, 373, 427, 1257
AluBI AGCT 6 cut(s) 267, 448, 460, 474, 1210, 1272
AluI AGCT 6 cut(s) 267, 448, 460, 474, 1210, 1272
Alw21I GWGCWC 2 cut(s) 462, 1274
Alw26I GTCTC 1 cut(s) 1049
AlwI GGATC 6 cut(s) 668, 669, 682, 764, 1272, 1285
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 6 cut(s) 88, 248, 292, 371, 490, 1167
ApeKI GCWGC 4 cut(s) 166, 525, 702, 1344
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 747, 1310
AsuHPI GGTGA 6 cut(s) 332, 608, 665, 808, 1051, 1298
AvaII GGWCC 2 cut(s) 747, 1310
BaeGI GKGCMC 1 cut(s) 1231
BalI TGGCCA 3 cut(s) 90, 250, 294
BamHI GGATCC 2 cut(s) 674, 1277
BanI GGYRCC 1 cut(s) 1226
BanII GRGCYC 3 cut(s) 462, 1185, 1274
Bbv12I GWGCWC 2 cut(s) 462, 1274
BbvI GCAGC 4 cut(s) 153, 512, 714, 1356
BccI CCATC 6 cut(s) 482, 650, 674, 716, 736, 1024
BceAI ACGGC 2 cut(s) 477, 646
BciT130I CCWGG 5 cut(s) 87, 188, 375, 429, 1259
BcoDI GTCTC 1 cut(s) 1049
BfmI CTRYAG 1 cut(s) 1171
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 4 cut(s) 167, 526, 703, 1345
BlpI GCTNAGC 1 cut(s) 268
BlsI GCNGC 4 cut(s) 168, 527, 704, 1346
Bme1390I CCNGG 5 cut(s) 87, 188, 375, 429, 1259
Bme18I GGWCC 2 cut(s) 747, 1310
BmgT120I GGNCC 2 cut(s) 747, 1310
BmiI GGNNCC 8 cut(s) 6, 175, 499, 676, 748, 1182, 1228, 1279
BmrFI CCNGG 5 cut(s) 87, 188, 375, 429, 1259
BmsI GCATC 4 cut(s) 346, 537, 724, 789
BpmI CTGGAG 1 cut(s) 1108
Bpu1102I GCTNAGC 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 665
BsaJI CCNNGG 8 cut(s) 368, 427, 493, 896, 994, 1032, 1231, 1258
BsaXI ACNNNNNCTCC 6 cut(s) 489, 519, 764, 794, 1172, 1202
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 514, 793, 836
Bse1I ACTGG 2 cut(s) 885, 1091
Bse3DI GCAATG 2 cut(s) 556, 697
Bse8I GATNNNNATC 1 cut(s) 665
BseBI CCWGG 5 cut(s) 87, 188, 375, 429, 1259
BseDI CCNNGG 8 cut(s) 368, 427, 493, 896, 994, 1032, 1231, 1258
BseGI GGATG 7 cut(s) 94, 558, 727, 915, 1330, 1370, 1376
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 4 cut(s) 374, 514, 793, 836
BseMI GCAATG 2 cut(s) 556, 697
BseMII CTCAG 2 cut(s) 374, 396
BseNI ACTGG 2 cut(s) 885, 1091
BseSI GKGCMC 1 cut(s) 1231
BseXI GCAGC 4 cut(s) 153, 512, 714, 1356
BsgI GTGCAG 2 cut(s) 905, 922
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 6 cut(s) 90, 250, 294, 373, 492, 1169
BshNI GGYRCC 1 cut(s) 1226
BsiEI CGRYCG 1 cut(s) 963
BsiHKAI GWGCWC 2 cut(s) 462, 1274
BslFI GGGAC 3 cut(s) 822, 1115, 1262
BslI CCNNNNNNNGG 4 cut(s) 374, 514, 793, 836
BsmAI GTCTC 1 cut(s) 1049
BsmFI GGGAC 3 cut(s) 822, 1115, 1262
BsmI GAATGC 3 cut(s) 65, 897, 1121
BsnI GGCC 6 cut(s) 90, 250, 294, 373, 492, 1169
Bsp1286I GDGCHC 4 cut(s) 462, 1185, 1231, 1274
Bsp143I GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
Bsp1720I GCTNAGC 1 cut(s) 268
BspACI CCGC 2 cut(s) 637, 1061
BspANI GGCC 6 cut(s) 90, 250, 294, 373, 492, 1169
BspCNI CTCAG 2 cut(s) 375, 397
BspLI GGNNCC 8 cut(s) 6, 175, 499, 676, 748, 1182, 1228, 1279
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 6 cut(s) 668, 669, 682, 764, 1272, 1285
BspT107I GGYRCC 1 cut(s) 1226
BsrDI GCAATG 2 cut(s) 556, 697
BsrI ACTGG 2 cut(s) 885, 1091
BssECI CCNNGG 8 cut(s) 368, 427, 493, 896, 994, 1032, 1231, 1258
BssMI GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
BssT1I CCWWGG 5 cut(s) 368, 896, 994, 1032, 1231
Bst2UI CCWGG 5 cut(s) 87, 188, 375, 429, 1259
Bst4CI ACNGT 7 cut(s) 227, 584, 653, 815, 1175, 1286, 1298
Bst6I CTCTTC 3 cut(s) 87, 199, 1391
BstAPI GCANNNNNTGC 3 cut(s) 166, 278, 892
BstC8I GCNNGC 2 cut(s) 842, 1221
BstDEI CTNAG 3 cut(s) 268, 383, 405
BstDSI CCRYGG 1 cut(s) 493
BstENI CCTNNNNNAGG 1 cut(s) 834
BstF5I GGATG 7 cut(s) 94, 558, 727, 915, 1330, 1370, 1376
BstKTI GATC 6 cut(s) 663, 677, 759, 963, 1094, 1280
BstMAI GTCTC 1 cut(s) 1049
BstMBI GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
BstMCI CGRYCG 1 cut(s) 963
BstMWI GCNNNNNNNGC 7 cut(s) 149, 166, 278, 445, 892, 909, 1216
BstNI CCWGG 5 cut(s) 87, 188, 375, 429, 1259
BstNSI RCATGY 5 cut(s) 439, 844, 1223, 1333, 1444
BstSCI CCNGG 5 cut(s) 85, 186, 373, 427, 1257
BstSFI CTRYAG 1 cut(s) 1171
BstSLI GKGCMC 1 cut(s) 1231
BstV1I GCAGC 4 cut(s) 153, 512, 714, 1356
BstX2I RGATCY 3 cut(s) 660, 674, 1277
BstYI RGATCY 3 cut(s) 660, 674, 1277
BsuRI GGCC 6 cut(s) 90, 250, 294, 373, 492, 1169
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 7 cut(s) 94, 558, 727, 915, 1330, 1370, 1376
BtsI GCAGTG 4 cut(s) 712, 744, 976, 1358
BtsIMutI CAGTG 8 cut(s) 380, 580, 712, 744, 820, 976, 1180, 1358
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 842, 1221
CaiI CAGNNNCTG 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 747, 1310
CseI GACGC 1 cut(s) 608
CspCI CAANNNNNGTGG 2 cut(s) 1032, 1067
CviAII CATG 9 cut(s) 198, 436, 841, 920, 1216, 1220, 1330, 1410, 1441
DdeI CTNAG 3 cut(s) 268, 383, 405
DpnI GATC 6 cut(s) 662, 676, 758, 962, 1093, 1279
DpnII GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
DraIII CACNNNGTG 2 cut(s) 514, 568
EaeI YGGCCR 4 cut(s) 88, 248, 292, 490
Eam1104I CTCTTC 3 cut(s) 87, 199, 1391
EarI CTCTTC 3 cut(s) 87, 199, 1391
Ecl136II GAGCTC 2 cut(s) 460, 1272
Eco130I CCWWGG 5 cut(s) 368, 896, 994, 1032, 1231
Eco147I AGGCCT 1 cut(s) 1169
Eco24I GRGCYC 3 cut(s) 462, 1185, 1274
Eco47I GGWCC 2 cut(s) 747, 1310
Eco53kI GAGCTC 2 cut(s) 460, 1272
Eco57I CTGAAG 1 cut(s) 1119
EcoICRI GAGCTC 2 cut(s) 460, 1272
EcoNI CCTNNNNNAGG 1 cut(s) 834
EcoRII CCWGG 5 cut(s) 85, 186, 373, 427, 1257
EcoT14I CCWWGG 5 cut(s) 368, 896, 994, 1032, 1231
EcoT22I ATGCAT 2 cut(s) 1221, 1446
EcoT38I GRGCYC 3 cut(s) 462, 1185, 1274
ErhI CCWWGG 5 cut(s) 368, 896, 994, 1032, 1231
FaeI CATG 9 cut(s) 201, 439, 844, 923, 1219, 1223, 1333, 1413, 1444
FaqI GGGAC 3 cut(s) 822, 1115, 1262
FatI CATG 9 cut(s) 197, 435, 840, 919, 1215, 1219, 1329, 1409, 1440
FauNDI CATATG 1 cut(s) 686
Fnu4HI GCNGC 4 cut(s) 167, 526, 703, 1345
FokI GGATG 7 cut(s) 81, 545, 734, 902, 1337, 1357, 1363
FriOI GRGCYC 3 cut(s) 462, 1185, 1274
Fsp4HI GCNGC 4 cut(s) 167, 526, 703, 1345
GluI GCNGC 4 cut(s) 167, 526, 703, 1345
GsuI CTGGAG 1 cut(s) 1108
HaeIII GGCC 6 cut(s) 90, 250, 294, 373, 492, 1169
HgaI GACGC 1 cut(s) 608
Hin1II CATG 9 cut(s) 201, 439, 844, 923, 1219, 1223, 1333, 1413, 1444
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 3 cut(s) 191, 341, 364
HphI GGTGA 6 cut(s) 332, 608, 665, 808, 1051, 1298
Hpy166II GTNNAC 4 cut(s) 508, 750, 928, 1114
Hpy188I TCNGA 3 cut(s) 649, 729, 1096
Hpy188III TCNNGA 5 cut(s) 119, 415, 1275, 1313, 1335
Hpy8I GTNNAC 4 cut(s) 508, 750, 928, 1114
HpyAV CCTTC 7 cut(s) 127, 150, 868, 1058, 1069, 1135, 1159
HpyCH4III ACNGT 7 cut(s) 227, 584, 653, 815, 1175, 1286, 1298
HpyCH4IV ACGT 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 166, 278, 445, 892, 909, 1216
HpyF3I CTNAG 3 cut(s) 268, 383, 405
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 9 cut(s) 201, 439, 844, 923, 1219, 1223, 1333, 1413, 1444
Kzo9I GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
LmnI GCTCC 5 cut(s) 497, 1018, 1118, 1180, 1269
Lsp1109I GCAGC 4 cut(s) 153, 512, 714, 1356
LweI GCATC 4 cut(s) 346, 537, 724, 789
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 6 cut(s) 236, 334, 596, 847, 1039, 1286
MalI GATC 6 cut(s) 662, 676, 758, 962, 1093, 1279
MboI GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
MboII GAAGA 8 cut(s) 26, 42, 74, 119, 186, 457, 887, 1378
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 3 cut(s) 660, 674, 1277
MhlI GDGCHC 4 cut(s) 462, 1185, 1231, 1274
MlsI TGGCCA 3 cut(s) 90, 250, 294
MluCI AATT 2 cut(s) 244, 282
MluNI TGGCCA 3 cut(s) 90, 250, 294
MlyI GAGTC 2 cut(s) 185, 335
MmeI TCCRAC 2 cut(s) 209, 1305
MnlI CCTC 9 cut(s) 80, 86, 302, 420, 787, 1030, 1041, 1090, 1394
Mox20I TGGCCA 3 cut(s) 90, 250, 294
Mph1103I ATGCAT 2 cut(s) 1221, 1446
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 3 cut(s) 90, 250, 294
MseI TTAA 2 cut(s) 138, 1155
MslI CAYNNNNRTG 7 cut(s) 789, 816, 839, 845, 920, 1224, 1408
Msp20I TGGCCA 3 cut(s) 90, 250, 294
MspA1I CMGCKG 1 cut(s) 1061
MspR9I CCNGG 5 cut(s) 87, 188, 375, 429, 1259
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 3 cut(s) 65, 897, 1121
MvaI CCWGG 5 cut(s) 87, 188, 375, 429, 1259
MwoI GCNNNNNNNGC 7 cut(s) 149, 166, 278, 445, 892, 909, 1216
NdeI CATATG 1 cut(s) 686
NdeII GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
NlaIII CATG 9 cut(s) 201, 439, 844, 923, 1219, 1223, 1333, 1413, 1444
NlaIV GGNNCC 8 cut(s) 6, 175, 499, 676, 748, 1182, 1228, 1279
NmuCI GTSAC 6 cut(s) 236, 334, 596, 847, 1039, 1286
NsiI ATGCAT 2 cut(s) 1221, 1446
NspI RCATGY 5 cut(s) 439, 844, 1223, 1333, 1444
PaeI GCATGC 2 cut(s) 844, 1223
PceI AGGCCT 1 cut(s) 1169
PciI ACATGT 1 cut(s) 1329
PctI GAATGC 3 cut(s) 65, 897, 1121
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 364
PflMI CCANNNNNTGG 1 cut(s) 514
PkrI GCNGC 4 cut(s) 168, 527, 704, 1346
Ple19I CGATCG 1 cut(s) 963
PleI GAGTC 2 cut(s) 185, 335
PpsI GAGTC 2 cut(s) 185, 335
PscI ACATGT 1 cut(s) 1329
Psp124BI GAGCTC 2 cut(s) 462, 1274
Psp6I CCWGG 5 cut(s) 85, 186, 373, 427, 1257
PspGI CCWGG 5 cut(s) 85, 186, 373, 427, 1257
PspN4I GGNNCC 8 cut(s) 6, 175, 499, 676, 748, 1182, 1228, 1279
PspPI GGNCC 2 cut(s) 747, 1310
PstNI CAGNNNCTG 1 cut(s) 15
PsuI RGATCY 3 cut(s) 660, 674, 1277
PvuI CGATCG 1 cut(s) 963
RseI CAYNNNNRTG 7 cut(s) 789, 816, 839, 845, 920, 1224, 1408
SacI GAGCTC 2 cut(s) 462, 1274
SaqAI TTAA 2 cut(s) 138, 1155
SatI GCNGC 4 cut(s) 167, 526, 703, 1345
Sau3AI GATC 6 cut(s) 660, 674, 756, 960, 1091, 1277
Sau96I GGNCC 2 cut(s) 747, 1310
SchI GAGTC 2 cut(s) 185, 335
ScrFI CCNGG 5 cut(s) 87, 188, 375, 429, 1259
SduI GDGCHC 4 cut(s) 462, 1185, 1231, 1274
SfaNI GCATC 4 cut(s) 346, 537, 724, 789
SfcI CTRYAG 1 cut(s) 1171
SinI GGWCC 2 cut(s) 747, 1310
SmiMI CAYNNNNRTG 7 cut(s) 789, 816, 839, 845, 920, 1224, 1408
SphI GCATGC 2 cut(s) 844, 1223
Sse9I AATT 2 cut(s) 244, 282
SseBI AGGCCT 1 cut(s) 1169
SsiI CCGC 2 cut(s) 637, 1061
SstI GAGCTC 2 cut(s) 462, 1274
StuI AGGCCT 1 cut(s) 1169
StyD4I CCNGG 5 cut(s) 85, 186, 373, 427, 1257
StyI CCWWGG 5 cut(s) 368, 896, 994, 1032, 1231
TaaI ACNGT 7 cut(s) 227, 584, 653, 815, 1175, 1286, 1298
TaiI ACGT 1 cut(s) 536
TasI AATT 2 cut(s) 244, 282
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 138, 1155
Tru9I TTAA 2 cut(s) 138, 1155
TscAI CASTG 8 cut(s) 387, 587, 719, 744, 820, 976, 1180, 1365
TseFI GTSAC 6 cut(s) 236, 334, 596, 847, 1039, 1286
TseI GCWGC 4 cut(s) 166, 525, 702, 1344
Tsp45I GTSAC 6 cut(s) 236, 334, 596, 847, 1039, 1286
TspDTI ATGAA 4 cut(s) 116, 186, 532, 1359
TspGWI ACGGA 4 cut(s) 579, 1131, 1305, 1337
TspRI CASTG 8 cut(s) 387, 587, 719, 744, 820, 976, 1180, 1365
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 747, 1310
XagI CCTNNNNNAGG 1 cut(s) 834
XceI RCATGY 5 cut(s) 439, 844, 1223, 1333, 1444
XcmI CCANNNNNNNNNTGG 2 cut(s) 302, 515
XmnI GAANNNNTTC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 1221, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.