Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Forward (+)

5257521 .. 5260722

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCACTGGCATCCATAGCCATAGCATCATCAAATCCCCTGTACTCTTCTCTAACTTTACCAACTTCCAGAGGAAGAGGAGGAGGCAGCAGCACAAGGAGAAGAAGGACCCATTGTCTAAAGATTACTGGGTCCAGTCTCGCTGGTGGCTCTGCTCTTTTCCAAGCAGCCCACCATACTGTGGATACATACATTAAAAGTGGTATGGTTATTGGGTTGGGGTCTGGTCAAGCTTCTGATATGGCCATACAGTATATAGGTCTGCAACTTGGTGCAGGTGCTCTAAAAGATATAGTGGGGATACCAATGTCCATAGCATGTGCAAGTGAGGCGGCAAAGGCAGGAATTCCATTGGGTCACTATGAGTATTGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAGGAACACTTATATCTGTCATTGGGCGAACAATAAATCAGGGAGAGGAGTCCATAATCCAAGAGAAGTCTATACTAAACGCAGCCAATAAGCTTGTGTTCATGATCACAGAAAACCAGTACAAAAGTGGTCCGGATGGTTCTATTCCAGTTTTAGTGAATTCTCTCAACTGGATGCAAGCTGCTGAAGAGATAGATGACCTTTTTTTAGGTGATGCAGAGGTATGGAGAAGACCATCAATTGGGATCGCGGGTCCTAATGGGGGTGAGTTCCCACTAGTCACCAAAGAAGGCCATAATGTTCTTGATGTCATATTTACATCTCCAATACTAAGCCTGAATGAAGTATCGAAGAGCCTTGATGAAGTTGATGGGGTCATAGACCATGGAATCATTTCCAAGTTCCCATGCACAGCAGTAATTGCTTCAGAAAGTGGGCTGTCTGTTGTTGATAATCTGCCAAAGAATGCTGTAAAGGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

300

Amino Acids

31.43

Weight (kDa)

4.9

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccB7I	CCANNNNNTGG	2 cut(s)	181, 656
AccII	CGCG	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	2 cut(s)	332, 665
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	345, 574
AcuI	CTGAAG	2 cut(s)	621, 825
AfaI	GTAC	2 cut(s)	44, 536
AfiI	CCNNNNNNNGG	3 cut(s)	181, 656, 677
AhdI	GACNNNNNGTC	1 cut(s)	114
AhlI	ACTAGT	1 cut(s)	691
AluBI	AGCT	3 cut(s)	233, 508, 596
AluI	AGCT	3 cut(s)	233, 508, 596
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	668
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	2 cut(s)	243, 706
ApeKI	GCWGC	5 cut(s)	87, 90, 167, 497, 596
ApoI	RAATTY	2 cut(s)	345, 574
Asp700I	GAANNNNTTC	1 cut(s)	808
AspS9I	GGNCC	4 cut(s)	108, 132, 545, 668
AsuHPI	GGTGA	3 cut(s)	638, 688, 692
AvaII	GGWCC	4 cut(s)	108, 132, 545, 668
BaeI	ACNNNNGTAYC	2 cut(s)	293, 326
BalI	TGGCCA	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	99, 102, 179, 509, 583
BccI	CCATC	3 cut(s)	545, 658, 779
BciVI	GTATCC	2 cut(s)	178, 294
BclI	TGATCA	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	266
BfuI	GTATCC	2 cut(s)	178, 294
BisI	GCNGC	6 cut(s)	88, 91, 168, 333, 498, 597
BlsI	GCNGC	6 cut(s)	89, 92, 169, 334, 499, 598
Bme18I	GGWCC	4 cut(s)	108, 132, 545, 668
BmeRI	GACNNNNNGTC	1 cut(s)	114
BmgT120I	GGNCC	4 cut(s)	108, 132, 545, 668
BmiI	GGNNCC	4 cut(s)	110, 133, 669, 894
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	5 cut(s)	20, 35, 388, 579, 619
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	799
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 656, 677
Bse1I	ACTGG	6 cut(s)	12, 133, 135, 532, 563, 590
BseAI	TCCGGA	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	799
BseGI	GGATG	3 cut(s)	11, 556, 594
BseLI	CCNNNNNNNGG	3 cut(s)	181, 656, 677
BseNI	ACTGG	6 cut(s)	12, 133, 135, 532, 563, 590
BseRI	GAGGAG	3 cut(s)	93, 96, 476
BseXI	GCAGC	5 cut(s)	99, 102, 179, 509, 583
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	2 cut(s)	245, 708
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	181, 656, 677
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	2 cut(s)	245, 708
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	519, 660
Bsp19I	CCATGG	1 cut(s)	799
BspACI	CCGC	2 cut(s)	332, 665
BspANI	GGCC	2 cut(s)	245, 708
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	4 cut(s)	110, 133, 669, 894
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	668
BspQI	GCTCTTC	1 cut(s)	761
BsrI	ACTGG	6 cut(s)	12, 133, 135, 532, 563, 590
BssECI	CCNNGG	1 cut(s)	799
BssMI	GATC	2 cut(s)	519, 660
BssT1I	CCWWGG	1 cut(s)	799
Bst4CI	ACNGT	2 cut(s)	181, 252
Bst6I	CTCTTC	4 cut(s)	52, 70, 597, 761
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	746
BstDSI	CCRYGG	1 cut(s)	799
BstF5I	GGATG	3 cut(s)	11, 556, 594
BstFNI	CGCG	1 cut(s)	665
BstKTI	GATC	2 cut(s)	522, 663
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	519, 660
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 329, 338, 836
BstNSI	RCATGY	1 cut(s)	321
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	5 cut(s)	99, 102, 179, 509, 583
BstV2I	GAAGAC	1 cut(s)	652
BsuI	GTATCC	2 cut(s)	178, 294
BsuRI	GGCC	2 cut(s)	245, 708
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	3 cut(s)	11, 556, 594
BtsIMutI	CAGTG	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	4 cut(s)	108, 132, 545, 668
Csp6I	GTAC	2 cut(s)	43, 535
CviAII	CATG	4 cut(s)	318, 517, 800, 822
CviQI	GTAC	2 cut(s)	43, 535
DdeI	CTNAG	1 cut(s)	746
DpnI	GATC	2 cut(s)	521, 662
DpnII	GATC	2 cut(s)	519, 660
DriI	GACNNNNNGTC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	4 cut(s)	52, 70, 597, 761
Eam1105I	GACNNNNNGTC	1 cut(s)	114
EarI	CTCTTC	4 cut(s)	52, 70, 597, 761
Eco130I	CCWWGG	1 cut(s)	799
Eco47I	GGWCC	4 cut(s)	108, 132, 545, 668
Eco57I	CTGAAG	2 cut(s)	621, 825
EcoO109I	RGGNCCY	2 cut(s)	108, 668
EcoRI	GAATTC	2 cut(s)	345, 574
EcoT14I	CCWWGG	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	4 cut(s)	321, 520, 803, 825
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	4 cut(s)	317, 516, 799, 821
FauI	CCCGC	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	6 cut(s)	88, 91, 168, 333, 498, 597
FokI	GGATG	2 cut(s)	563, 601
Fsp4HI	GCNGC	6 cut(s)	88, 91, 168, 333, 498, 597
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	6 cut(s)	88, 91, 168, 333, 498, 597
HaeIII	GGCC	2 cut(s)	245, 708
HapII	CCGG	1 cut(s)	548
Hin1II	CATG	4 cut(s)	321, 520, 803, 825
HindIII	AAGCTT	2 cut(s)	231, 506
HinfI	GANTC	2 cut(s)	464, 804
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	3 cut(s)	638, 688, 692
Hpy188I	TCNGA	2 cut(s)	238, 844
Hpy188III	TCNNGA	4 cut(s)	69, 517, 548, 719
HpyAV	CCTTC	3 cut(s)	99, 410, 698
HpyCH4III	ACNGT	2 cut(s)	181, 252
HpyCH4V	TGCA	7 cut(s)	265, 275, 323, 389, 592, 632, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 329, 338, 836
HpyF3I	CTNAG	1 cut(s)	746
Hsp92II	CATG	4 cut(s)	321, 520, 803, 825
Kpn2I	TCCGGA	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	519, 660
LguI	GCTCTTC	1 cut(s)	761
Lsp1109I	GCAGC	5 cut(s)	99, 102, 179, 509, 583
LweI	GCATC	5 cut(s)	20, 35, 388, 579, 619
MaeI	CTAG	1 cut(s)	692
MaeIII	GTNAC	2 cut(s)	356, 694
MalI	GATC	2 cut(s)	521, 662
MboI	GATC	2 cut(s)	519, 660
MboII	GAAGA	7 cut(s)	39, 87, 114, 425, 614, 657, 778
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	5 cut(s)	345, 378, 574, 654, 834
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	7 cut(s)	65, 71, 74, 77, 322, 454, 628
Mox20I	TGGCCA	1 cut(s)	245
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	1 cut(s)	886
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	4 cut(s)	17, 329, 338, 836
NcoI	CCATGG	1 cut(s)	799
NdeII	GATC	2 cut(s)	519, 660
NlaIII	CATG	4 cut(s)	321, 520, 803, 825
NlaIV	GGNNCC	4 cut(s)	110, 133, 669, 894
NmuCI	GTSAC	2 cut(s)	356, 694
NspI	RCATGY	1 cut(s)	321
PagI	TCATGA	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	761
PctI	GAATGC	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	804
PflMI	CCANNNNNTGG	2 cut(s)	181, 656
PkrI	GCNGC	6 cut(s)	89, 92, 169, 334, 499, 598
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	2 cut(s)	108, 668
Psp5II	RGGWCCY	2 cut(s)	108, 668
PspN4I	GGNNCC	4 cut(s)	110, 133, 669, 894
PspPI	GGNCC	4 cut(s)	108, 132, 545, 668
PspPPI	RGGWCCY	2 cut(s)	108, 668
RsaI	GTAC	2 cut(s)	44, 536
RsaNI	GTAC	2 cut(s)	43, 535
SapI	GCTCTTC	1 cut(s)	761
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	6 cut(s)	88, 91, 168, 333, 498, 597
Sau3AI	GATC	2 cut(s)	519, 660
Sau96I	GGNCC	4 cut(s)	108, 132, 545, 668
SchI	GAGTC	1 cut(s)	473
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	8 cut(s)	235, 262, 280, 510, 598, 618, 628, 639
SfaNI	GCATC	5 cut(s)	20, 35, 388, 579, 619
SinI	GGWCC	4 cut(s)	108, 132, 545, 668
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	5 cut(s)	345, 378, 574, 654, 834
SsiI	CCGC	2 cut(s)	332, 665
SspMI	CTAG	1 cut(s)	692
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	181, 252
TaqI	TCGA	1 cut(s)	764
TasI	AATT	5 cut(s)	345, 378, 574, 654, 834
TatI	WGTACW	2 cut(s)	42, 534
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	804
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	356, 694
TseI	GCWGC	5 cut(s)	87, 90, 167, 497, 596
Tsp45I	GTSAC	2 cut(s)	356, 694
TspDTI	ATGAA	3 cut(s)	505, 771, 792
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	2 cut(s)	181, 656
VpaK11BI	GGWCC	4 cut(s)	108, 132, 545, 668
XapI	RAATTY	2 cut(s)	345, 574
XceI	RCATGY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.