Rh5CG146900

Ribose-5-phosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006749
Physical Location & Seq
Forward (+)
13217387 .. 13221284
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG146900.1

Sequence Viewer

Length: 915 bp
ATGGCACTGGCAATGGCAGCCATAGCAATAGCTTCACCAAATCCCCTGCATTCATCTCTAACTTTATCAAATGCCAGGGGCAGAAGAGCCTTCTGCACAAGACCAAGAAGAAGAAGAAGAACCCATTCTCTGATGAAGATTACTGGGTCCAGTCTTGCTGATGGCTCTGCTCTTTTTCAAGCAGCCCATTACACTGTGGATACCTACATCAAAAGTGGTATGGTGATTGGGTTGGGGTCTGGTATAGCTTCTGGTATGGCCATGCAGTATATAGGTCTGCAACTTGGAGCAGGTGCTTTAAAGGATATAGTGGGGATACCAACGTCTGTAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACCATGAGGATGGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGGTCGCAGGGTGAGGAGTCAATCATCCAAGAGAAGACTATATTAAACGCAGCCAATAAAGTTGTCTTCATAGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGATCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCAGTTTCCTCTAGTCACCAGAGAAGGCCATAACGTTATTGATGTCATATTTACATCTCCAATTCTAAGCCTTGCTGAAGTATCAATGAGCCTTGATAATATTGATGGAGTCATAGAGCATGGAATCATTTCCAAGTTCCCATGTACTGCAGTAATTGCTTCGGAAAGTGGGCCGTCTGTTGTTGATAATGTGCCAAAGAATTCAGTAAAGGAACCTTAA

Protein Analysis

304

Amino Acids

32.3

Weight (kDa)

5.62

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 104 - 289 8.9e-36 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 281
AclI AACGTT 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 360, 895
AcuI CTGAAG 2 cut(s) 636, 792
AfaI GTAC 1 cut(s) 841
AfiI CCNNNNNNNGG 3 cut(s) 671, 672, 692
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 32, 248
AluI AGCT 2 cut(s) 32, 248
Alw26I GTCTC 1 cut(s) 655
AoxI GGCC 4 cut(s) 258, 683, 721, 866
ApeKI GCWGC 4 cut(s) 17, 182, 347, 512
ApoI RAATTY 2 cut(s) 360, 895
Asp700I GAANNNNTTC 2 cut(s) 124, 823
AspS9I GGNCC 3 cut(s) 147, 683, 866
AsuHPI GGTGA 7 cut(s) 27, 235, 365, 485, 598, 653, 703
AvaII GGWCC 1 cut(s) 147
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BalI TGGCCA 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 503, 520
BbvI GCAGC 4 cut(s) 29, 194, 359, 524
BccI CCATC 5 cut(s) 155, 377, 560, 598, 794
BceAI ACGGC 1 cut(s) 853
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 2 cut(s) 193, 309
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 2 cut(s) 327, 843
BfuAI ACCTGC 1 cut(s) 281
BfuI GTATCC 2 cut(s) 193, 309
BisI GCNGC 4 cut(s) 18, 183, 348, 513
BlsI GCNGC 4 cut(s) 19, 184, 349, 514
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 3 cut(s) 147, 683, 866
BmiI GGNNCC 2 cut(s) 148, 909
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 341, 403, 634
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 503, 520
BsaI GGTCTC 1 cut(s) 655
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 671, 672, 692
Bse1I ACTGG 6 cut(s) 12, 148, 150, 547, 578, 605
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 388, 486, 571, 609
BseLI CCNNNNNNNGG 3 cut(s) 671, 672, 692
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 6 cut(s) 12, 148, 150, 547, 578, 605
BseRI GAGGAG 2 cut(s) 491, 673
BseXI GCAGC 4 cut(s) 29, 194, 359, 524
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 4 cut(s) 260, 685, 723, 868
BslI CCNNNNNNNGG 3 cut(s) 671, 672, 692
BsmAI GTCTC 1 cut(s) 655
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 4 cut(s) 260, 685, 723, 868
Bso31I GGTCTC 1 cut(s) 655
Bsp143I GATC 1 cut(s) 628
BspANI GGCC 4 cut(s) 260, 685, 723, 868
BspCNI CTCAG 1 cut(s) 680
BspLI GGNNCC 2 cut(s) 148, 909
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 281
BspQI GCTCTTC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 6 cut(s) 12, 148, 150, 547, 578, 605
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 79, 612
BstAPI GCANNNNNTGC 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 2 cut(s) 667, 761
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 4 cut(s) 388, 486, 571, 609
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 6 cut(s) 17, 23, 344, 353, 682, 851
BstNI CCWGG 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 327, 843
BstV1I GCAGC 4 cut(s) 29, 194, 359, 524
BstV2I GAAGAC 2 cut(s) 503, 520
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuI GTATCC 2 cut(s) 193, 309
BsuRI GGCC 4 cut(s) 260, 685, 723, 868
BtsCI GGATG 4 cut(s) 388, 486, 571, 609
BtsIMutI CAGTG 2 cut(s) 5, 192
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 678
Cfr13I GGNCC 3 cut(s) 147, 683, 866
Csp6I GTAC 1 cut(s) 840
CviAII CATG 5 cut(s) 262, 377, 689, 815, 837
CviQI GTAC 1 cut(s) 840
DdeI CTNAG 2 cut(s) 667, 761
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DraI TTTAAA 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 79, 612
EarI CTCTTC 2 cut(s) 79, 612
Eco31I GGTCTC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 636, 792
Eco91I GGTNACC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 683
EcoO65I GGTNACC 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 360, 895
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 5 cut(s) 265, 380, 692, 818, 840
FatI CATG 5 cut(s) 261, 376, 688, 814, 836
Fnu4HI GCNGC 4 cut(s) 18, 183, 348, 513
FokI GGATG 4 cut(s) 395, 473, 578, 616
Fsp4HI GCNGC 4 cut(s) 18, 183, 348, 513
FspBI CTAG 1 cut(s) 707
GluI GCNGC 4 cut(s) 18, 183, 348, 513
HaeIII GGCC 4 cut(s) 260, 685, 723, 868
Hin1II CATG 5 cut(s) 265, 380, 692, 818, 840
HinfI GANTC 4 cut(s) 479, 589, 804, 819
HphI GGTGA 7 cut(s) 27, 235, 365, 485, 598, 653, 703
Hpy188I TCNGA 3 cut(s) 132, 539, 859
HpyAV CCTTC 2 cut(s) 100, 713
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 323, 729
HpyCH4V TGCA 8 cut(s) 49, 96, 265, 280, 338, 404, 647, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 23, 344, 353, 682, 851
HpyF3I CTNAG 2 cut(s) 667, 761
HpySE526I ACGT 2 cut(s) 323, 729
Hsp92II CATG 5 cut(s) 265, 380, 692, 818, 840
Kzo9I GATC 1 cut(s) 628
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 4 cut(s) 29, 194, 359, 524
LweI GCATC 3 cut(s) 341, 403, 634
MaeI CTAG 1 cut(s) 707
MaeII ACGT 2 cut(s) 323, 729
MaeIII GTNAC 2 cut(s) 371, 709
MalI GATC 1 cut(s) 630
MboI GATC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 5 cut(s) 360, 393, 756, 849, 895
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 488, 813
MnlI CCTC 9 cut(s) 337, 373, 469, 603, 643, 651, 676, 696, 714
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 2 cut(s) 124, 823
MscI TGGCCA 1 cut(s) 260
MseI TTAA 3 cut(s) 299, 506, 913
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 6 cut(s) 17, 23, 344, 353, 682, 851
NdeII GATC 1 cut(s) 628
NlaIII CATG 5 cut(s) 265, 380, 692, 818, 840
NlaIV GGNNCC 2 cut(s) 148, 909
NmuCI GTSAC 2 cut(s) 371, 709
PaqCI CACCTGC 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 79
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 2 cut(s) 124, 823
PfeI GAWTC 2 cut(s) 589, 819
PkrI GCNGC 4 cut(s) 19, 184, 349, 514
PleI GAGTC 2 cut(s) 487, 812
PpsI GAGTC 2 cut(s) 487, 812
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 148, 909
PspPI GGNCC 3 cut(s) 147, 683, 866
PsrI GAACNNNNNNTAC 2 cut(s) 553, 585
PstI CTGCAG 1 cut(s) 847
RsaI GTAC 1 cut(s) 841
RsaNI GTAC 1 cut(s) 840
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 3 cut(s) 299, 506, 913
SatI GCNGC 4 cut(s) 18, 183, 348, 513
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 3 cut(s) 147, 683, 866
SchI GAGTC 2 cut(s) 488, 813
ScrFI CCNGG 1 cut(s) 76
SfaNI GCATC 3 cut(s) 341, 403, 634
SfcI CTRYAG 2 cut(s) 327, 843
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 5 cut(s) 360, 393, 756, 849, 895
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 326, 732
TasI AATT 5 cut(s) 360, 393, 756, 849, 895
TatI WGTACW 1 cut(s) 839
TfiI GAWTC 2 cut(s) 589, 819
Tru1I TTAA 3 cut(s) 299, 506, 913
Tru9I TTAA 3 cut(s) 299, 506, 913
TscAI CASTG 2 cut(s) 12, 199
TseFI GTSAC 2 cut(s) 371, 709
TseI GCWGC 4 cut(s) 17, 182, 347, 512
Tsp45I GTSAC 2 cut(s) 371, 709
TspDTI ATGAA 3 cut(s) 42, 149, 520
TspRI CASTG 2 cut(s) 12, 199
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 2 cut(s) 360, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XmnI GAANNNNTTC 2 cut(s) 124, 823
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.