Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Reverse (-)

81218717 .. 81245249

Gene Structure 26533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCAGCCATAGCAATAGCTTCACCAAATCCCCTGCATTCATCTCTAACTTTATCAAATGCCAGAGGCAGAAGAGCCTTCTGCACAGGAAGAAGAAGAACCCATTCTCTGAAGATTACTGGGTCCAGTCTTGCAGATGGCTCTGCTCTTTTTCAAGCAGCCCATTACACTGTGGATACCTACATTAAAAGTGGTATGGTGATTGGGTTGGGGTCTGGTATAGCTTCTGGTATGGCCATGCAGTATATAGGTCTGCAACTTGGAGCAGGTGCTTTAAAGGATATAGTGGGGATACCGACGTCTGTAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACTATGAGGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGATCGCAGGGTGAGGAGTCAATCATCCAAGAGAAGACTATATTAAACGCAGCCAATAAAGTTGTCTTCATAGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCAGTTTCCTCTAGTCACCAGAGAAGGCCATAACGTTATTGATGTCATATTTACATCTCCAATTCTTAGCCTTGCTGAAGTATCAATGAGCCTTGATAATATTGATGGAGTCATAGAGCATGGAATCATTTCCAAGTTCCCATGCACTGCAGTAATTGCTTCGGAAAGTGGGCCGTCTGTTGTTGATAATGTGCCAAAGAATTCAGTAAAGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

296

Amino Acids

31.33

Weight (kDa)

5.16

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	96 - 281	3.3e-36	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	705
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	336, 871
AcuI	CTGAAG	3 cut(s)	131, 612, 768
AcyI	GRCGYC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	647, 648, 668
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	2 cut(s)	20, 224
AluI	AGCT	2 cut(s)	20, 224
Alw26I	GTCTC	1 cut(s)	631
AoxI	GGCC	4 cut(s)	234, 659, 697, 842
ApeKI	GCWGC	4 cut(s)	5, 158, 323, 488
ApoI	RAATTY	2 cut(s)	336, 871
Asp700I	GAANNNNTTC	2 cut(s)	103, 799
AspS9I	GGNCC	3 cut(s)	123, 659, 842
AsuHPI	GGTGA	6 cut(s)	15, 211, 461, 574, 629, 679
AvaII	GGWCC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BalI	TGGCCA	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	479, 496
BbvI	GCAGC	4 cut(s)	17, 170, 335, 500
BccI	CCATC	4 cut(s)	131, 536, 574, 770
BceAI	ACGGC	1 cut(s)	829
BciVI	GTATCC	2 cut(s)	169, 285
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	2 cut(s)	303, 819
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	2 cut(s)	169, 285
BisI	GCNGC	4 cut(s)	6, 159, 324, 489
BlsI	GCNGC	4 cut(s)	7, 160, 325, 490
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	123, 659, 842
BmiI	GGNNCC	2 cut(s)	124, 885
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	317, 379, 610
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	479, 496
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	3 cut(s)	647, 648, 668
Bse1I	ACTGG	5 cut(s)	124, 126, 523, 554, 581
BseGI	GGATG	3 cut(s)	462, 547, 585
BseLI	CCNNNNNNNGG	3 cut(s)	647, 648, 668
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	5 cut(s)	124, 126, 523, 554, 581
BseRI	GAGGAG	2 cut(s)	467, 649
BseXI	GCAGC	4 cut(s)	17, 170, 335, 500
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	4 cut(s)	236, 661, 699, 844
BslI	CCNNNNNNNGG	3 cut(s)	647, 648, 668
BsmAI	GTCTC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	236, 661, 699, 844
Bso31I	GGTCTC	1 cut(s)	631
Bsp143I	GATC	1 cut(s)	440
BspANI	GGCC	4 cut(s)	236, 661, 699, 844
BspCNI	CTCAG	1 cut(s)	656
BspLI	GGNNCC	2 cut(s)	124, 885
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	631
BsrI	ACTGG	5 cut(s)	124, 126, 523, 554, 581
BssMI	GATC	1 cut(s)	440
BssNI	GRCGYC	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	67, 588
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	2 cut(s)	643, 737
BstF5I	GGATG	3 cut(s)	462, 547, 585
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 320, 329, 658, 827
BstSFI	CTRYAG	2 cut(s)	303, 819
BstV1I	GCAGC	4 cut(s)	17, 170, 335, 500
BstV2I	GAAGAC	2 cut(s)	479, 496
BsuI	GTATCC	2 cut(s)	169, 285
BsuRI	GGCC	4 cut(s)	236, 661, 699, 844
BtsCI	GGATG	3 cut(s)	462, 547, 585
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	168, 816
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	654
Cfr13I	GGNCC	3 cut(s)	123, 659, 842
CviAII	CATG	4 cut(s)	238, 665, 791, 813
DdeI	CTNAG	2 cut(s)	643, 737
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraI	TTTAAA	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	67, 588
EarI	CTCTTC	2 cut(s)	67, 588
Eco31I	GGTCTC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	131, 612, 768
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRI	GAATTC	2 cut(s)	336, 871
FaeI	CATG	4 cut(s)	241, 668, 794, 816
FatI	CATG	4 cut(s)	237, 664, 790, 812
Fnu4HI	GCNGC	4 cut(s)	6, 159, 324, 489
FokI	GGATG	3 cut(s)	449, 554, 592
Fsp4HI	GCNGC	4 cut(s)	6, 159, 324, 489
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	4 cut(s)	6, 159, 324, 489
HaeIII	GGCC	4 cut(s)	236, 661, 699, 844
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	241, 668, 794, 816
HinfI	GANTC	4 cut(s)	455, 565, 780, 795
HphI	GGTGA	6 cut(s)	15, 211, 461, 574, 629, 679
Hpy188I	TCNGA	3 cut(s)	111, 515, 835
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	88, 689
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	299, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 320, 329, 658, 827
HpyF3I	CTNAG	2 cut(s)	643, 737
HpySE526I	ACGT	2 cut(s)	299, 705
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	241, 668, 794, 816
Kzo9I	GATC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	4 cut(s)	17, 170, 335, 500
LweI	GCATC	3 cut(s)	317, 379, 610
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	2 cut(s)	299, 705
MaeIII	GTNAC	2 cut(s)	347, 685
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	9 cut(s)	84, 102, 105, 108, 124, 416, 484, 496, 605
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	5 cut(s)	336, 369, 732, 825, 871
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	464, 789
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	2 cut(s)	103, 799
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	4 cut(s)	186, 275, 482, 889
Msp20I	TGGCCA	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	5 cut(s)	11, 320, 329, 658, 827
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	241, 668, 794, 816
NlaIV	GGNNCC	2 cut(s)	124, 885
NmuCI	GTSAC	2 cut(s)	347, 685
PaqCI	CACCTGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	103, 799
PfeI	GAWTC	2 cut(s)	565, 795
PkrI	GCNGC	4 cut(s)	7, 160, 325, 490
PleI	GAGTC	2 cut(s)	463, 788
PpsI	GAGTC	2 cut(s)	463, 788
Psp1406I	AACGTT	1 cut(s)	705
PspN4I	GGNNCC	2 cut(s)	124, 885
PspPI	GGNCC	3 cut(s)	123, 659, 842
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PstI	CTGCAG	1 cut(s)	823
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	186, 275, 482, 889
SatI	GCNGC	4 cut(s)	6, 159, 324, 489
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	3 cut(s)	123, 659, 842
SchI	GAGTC	2 cut(s)	464, 789
SfaNI	GCATC	3 cut(s)	317, 379, 610
SfcI	CTRYAG	2 cut(s)	303, 819
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	5 cut(s)	336, 369, 732, 825, 871
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	1 cut(s)	683
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	2 cut(s)	302, 708
TasI	AATT	5 cut(s)	336, 369, 732, 825, 871
TfiI	GAWTC	2 cut(s)	565, 795
Tru1I	TTAA	4 cut(s)	186, 275, 482, 889
Tru9I	TTAA	4 cut(s)	186, 275, 482, 889
TscAI	CASTG	2 cut(s)	175, 823
TseFI	GTSAC	2 cut(s)	347, 685
TseI	GCWGC	4 cut(s)	5, 158, 323, 488
Tsp45I	GTSAC	2 cut(s)	347, 685
TspDTI	ATGAA	2 cut(s)	30, 496
TspRI	CASTG	2 cut(s)	175, 823
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	336, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XmnI	GAANNNNTTC	2 cut(s)	103, 799
XspI	CTAG	1 cut(s)	683
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.