Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Forward (+)

14080186 .. 14084481

Gene Structure 4296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCACTGGCAATGGCAGCCATAGCAATAGCTTCACCAAATCCCCTGCATTCATCTCTAACTTTATCAAATGCCAGAGGCAGAAGAACCTTCTGCACAAGAACAAGAAGAAGAACCCATTCTCTGAAGATTACTGGGTCCAGTCTTGCTGATGGCTCTGCTCTTTTTCAAGCAGCCCATTACACTGTGGATACCTACATCAAAAGTGGTATGGTGATTGGGTTGGGGTCTGGTATAGCTTCTGGTATGGCCATGCAGTATATAGGTCTGCAACTTGGAGCAGGTGCTTTAAAGGATATAGTGGGGATACCAACGTCTGTAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACTATGAGGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGATCGCAGGGTGAGGAGTCGATCATCCAAGAGAAGACTATATTAAACGCAGCCAATAAAGTTGTCTTCATAGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCAGTTTCCTCTAGTCACCAGAGAAGGCCATAACGTTATTGATGTCATATTTACATCTCCAATTCTAAGCCTCGCTGAAGTATCAATGAGCCTTGATAATATTGATGGAGTCATAGAGCATGGAATCATTTCCAAGTTCCCATGCACTGCGGTAATTGCTTCGGAAAGTGGGCCGTCTGTTGTTGATAATGTGCCAAAGAATTCAGTAAAGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

301

Amino Acids

31.95

Weight (kDa)

5.27

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	101 - 286	3.4e-36	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	1 cut(s)	836
AclI	AACGTT	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	351, 886
AcuI	CTGAAG	3 cut(s)	146, 627, 783
AfiI	CCNNNNNNNGG	3 cut(s)	662, 663, 683
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	32, 239
AluI	AGCT	2 cut(s)	32, 239
Alw26I	GTCTC	1 cut(s)	646
AoxI	GGCC	4 cut(s)	249, 674, 712, 857
ApeKI	GCWGC	4 cut(s)	17, 173, 338, 503
ApoI	RAATTY	2 cut(s)	351, 886
Asp700I	GAANNNNTTC	2 cut(s)	118, 814
AspS9I	GGNCC	3 cut(s)	138, 674, 857
AsuHPI	GGTGA	6 cut(s)	27, 226, 476, 589, 644, 694
AvaII	GGWCC	1 cut(s)	138
BaeI	ACNNNNGTAYC	2 cut(s)	299, 332
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	494, 511
BbvI	GCAGC	4 cut(s)	29, 185, 350, 515
BccI	CCATC	4 cut(s)	146, 551, 589, 785
BceAI	ACGGC	1 cut(s)	844
BciVI	GTATCC	2 cut(s)	184, 300
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	2 cut(s)	184, 300
BisI	GCNGC	4 cut(s)	18, 174, 339, 504
BlsI	GCNGC	4 cut(s)	19, 175, 340, 505
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	3 cut(s)	138, 674, 857
BmiI	GGNNCC	2 cut(s)	139, 900
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	332, 394, 625
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	2 cut(s)	494, 511
BsaI	GGTCTC	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	3 cut(s)	662, 663, 683
Bse1I	ACTGG	6 cut(s)	12, 139, 141, 538, 569, 596
Bse3DI	GCAATG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	477, 562, 600
BseLI	CCNNNNNNNGG	3 cut(s)	662, 663, 683
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	6 cut(s)	12, 139, 141, 538, 569, 596
BseRI	GAGGAG	2 cut(s)	482, 664
BseXI	GCAGC	4 cut(s)	29, 185, 350, 515
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	251, 676, 714, 859
BslI	CCNNNNNNNGG	3 cut(s)	662, 663, 683
BsmAI	GTCTC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	251, 676, 714, 859
Bso31I	GGTCTC	1 cut(s)	646
Bsp143I	GATC	2 cut(s)	455, 474
BspACI	CCGC	1 cut(s)	836
BspANI	GGCC	4 cut(s)	251, 676, 714, 859
BspCNI	CTCAG	1 cut(s)	671
BspLI	GGNNCC	2 cut(s)	139, 900
BspMI	ACCTGC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	6 cut(s)	12, 139, 141, 538, 569, 596
BssMI	GATC	2 cut(s)	455, 474
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	2 cut(s)	658, 752
BstF5I	GGATG	3 cut(s)	477, 562, 600
BstKTI	GATC	2 cut(s)	458, 477
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	2 cut(s)	455, 474
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 23, 335, 344, 673, 842
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	29, 185, 350, 515
BstV2I	GAAGAC	2 cut(s)	494, 511
BsuI	GTATCC	2 cut(s)	184, 300
BsuRI	GGCC	4 cut(s)	251, 676, 714, 859
BtsCI	GGATG	3 cut(s)	477, 562, 600
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	5, 183, 831
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	669
Cfr13I	GGNCC	3 cut(s)	138, 674, 857
CviAII	CATG	4 cut(s)	253, 680, 806, 828
DdeI	CTNAG	2 cut(s)	658, 752
DpnI	GATC	2 cut(s)	457, 476
DpnII	GATC	2 cut(s)	455, 474
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	3 cut(s)	146, 627, 783
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRI	GAATTC	2 cut(s)	351, 886
FaeI	CATG	4 cut(s)	256, 683, 809, 831
FatI	CATG	4 cut(s)	252, 679, 805, 827
Fnu4HI	GCNGC	4 cut(s)	18, 174, 339, 504
FokI	GGATG	3 cut(s)	464, 569, 607
Fsp4HI	GCNGC	4 cut(s)	18, 174, 339, 504
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	4 cut(s)	18, 174, 339, 504
HaeIII	GGCC	4 cut(s)	251, 676, 714, 859
Hin1II	CATG	4 cut(s)	256, 683, 809, 831
HinfI	GANTC	4 cut(s)	470, 580, 795, 810
HphI	GGTGA	6 cut(s)	27, 226, 476, 589, 644, 694
Hpy188I	TCNGA	3 cut(s)	126, 530, 850
HpyAV	CCTTC	2 cut(s)	100, 704
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	314, 720
HpyCH4V	TGCA	8 cut(s)	49, 96, 256, 271, 329, 395, 638, 831
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 23, 335, 344, 673, 842
HpyF3I	CTNAG	2 cut(s)	658, 752
HpySE526I	ACGT	2 cut(s)	314, 720
Hsp92II	CATG	4 cut(s)	256, 683, 809, 831
Kzo9I	GATC	2 cut(s)	455, 474
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	4 cut(s)	29, 185, 350, 515
LweI	GCATC	3 cut(s)	332, 394, 625
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	2 cut(s)	314, 720
MaeIII	GTNAC	2 cut(s)	362, 700
MalI	GATC	2 cut(s)	457, 476
MboI	GATC	2 cut(s)	455, 474
MboII	GAAGA	8 cut(s)	96, 120, 123, 139, 431, 499, 511, 620
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	5 cut(s)	351, 384, 747, 840, 886
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	479, 804
Mox20I	TGGCCA	1 cut(s)	251
MroXI	GAANNNNTTC	2 cut(s)	118, 814
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	3 cut(s)	290, 497, 904
Msp20I	TGGCCA	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	6 cut(s)	17, 23, 335, 344, 673, 842
NdeII	GATC	2 cut(s)	455, 474
NlaIII	CATG	4 cut(s)	256, 683, 809, 831
NlaIV	GGNNCC	2 cut(s)	139, 900
NmuCI	GTSAC	2 cut(s)	362, 700
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	118, 814
PfeI	GAWTC	2 cut(s)	580, 810
PkrI	GCNGC	4 cut(s)	19, 175, 340, 505
PleI	GAGTC	2 cut(s)	478, 803
PpsI	GAGTC	2 cut(s)	478, 803
Psp1406I	AACGTT	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	139, 900
PspPI	GGNCC	3 cut(s)	138, 674, 857
PsrI	GAACNNNNNNTAC	2 cut(s)	544, 576
SaqAI	TTAA	3 cut(s)	290, 497, 904
SatI	GCNGC	4 cut(s)	18, 174, 339, 504
Sau3AI	GATC	2 cut(s)	455, 474
Sau96I	GGNCC	3 cut(s)	138, 674, 857
SchI	GAGTC	2 cut(s)	479, 804
SfaNI	GCATC	3 cut(s)	332, 394, 625
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	5 cut(s)	351, 384, 747, 840, 886
SsiI	CCGC	1 cut(s)	836
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	1 cut(s)	698
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	317, 723
TaqI	TCGA	1 cut(s)	473
TasI	AATT	5 cut(s)	351, 384, 747, 840, 886
TfiI	GAWTC	2 cut(s)	580, 810
Tru1I	TTAA	3 cut(s)	290, 497, 904
Tru9I	TTAA	3 cut(s)	290, 497, 904
TscAI	CASTG	3 cut(s)	12, 190, 838
TseFI	GTSAC	2 cut(s)	362, 700
TseI	GCWGC	4 cut(s)	17, 173, 338, 503
Tsp45I	GTSAC	2 cut(s)	362, 700
TspDTI	ATGAA	2 cut(s)	42, 511
TspRI	CASTG	3 cut(s)	12, 190, 838
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	351, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmnI	GAANNNNTTC	2 cut(s)	118, 814
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.