Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002579.1

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Forward (+)

6301 .. 9617

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002579.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggcagccatagcaatagcttcaccaaatcccctgcattcatctctaactttatcaaatgccagaggcagaagagccttctgcacaagaacaagaacaagaacccattctctgaagattactgggtccagtctggctgatggctctgctctttttcaagcagcccattacactgtggatacctacattaaaagtggtatggtgattgggttggggtctggtatagcttctggtatggccatgcagtatataggtctgcaacttggagcaggtgctttaaaggatatagtggggataccgacgtctgtagcatctgcaagtgaggcagcaaaggcaggaattccattgggtcaccatgaggatagttctcaaattgattttgcatttgatgatgctgatattatagaagaaaggacacttattgctgtcattgggagaacaagatcgcagggtgaggagtcgatcatccaagagaagactatattaaacgcagccaataaagttgtcttcatagtcagagaaaaccagtataaatgtggtatggatggttctattccagttttggtgaatcctctcaactggatggaaactgctgaagagattgatgacctgtttttaggtgatgcagaggtatggaggagaccctcagttgggctggcagggcctcatggtggtcagtttcctctagtcaccagagaaggccataacgttattgatgtcatatttacatctccaattctaagccttgctgaagtatcaatgagccttgataatattgatggagtcatagagcatggaatcatttccaagttcccgttaagtattttgatccctatcacttttgcttgtacagagatgacatgccttttgctttatacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

293

Amino Acids

31.28

Weight (kDa)

5.23

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
AatII	GACGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	260
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	1 cut(s)	823
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	3 cut(s)	134, 615, 771
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	3 cut(s)	650, 651, 671
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	2 cut(s)	20, 227
AluI	AGCT	2 cut(s)	20, 227
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	823
AoxI	GGCC	3 cut(s)	237, 662, 700
ApeKI	GCWGC	4 cut(s)	5, 161, 326, 491
ApoI	RAATTY	1 cut(s)	339
ArsI	GACNNNNNNTTYG	2 cut(s)	850, 882
Asp700I	GAANNNNTTC	2 cut(s)	106, 802
AspS9I	GGNCC	2 cut(s)	126, 662
AsuHPI	GGTGA	7 cut(s)	15, 214, 344, 464, 577, 632, 682
AvaII	GGWCC	1 cut(s)	126
BaeI	ACNNNNGTAYC	2 cut(s)	287, 320
BalI	TGGCCA	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	482, 499
BbvI	GCAGC	4 cut(s)	17, 173, 338, 503
BccI	CCATC	4 cut(s)	134, 539, 577, 773
BciVI	GTATCC	2 cut(s)	172, 288
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	260
BfuI	GTATCC	2 cut(s)	172, 288
BisI	GCNGC	4 cut(s)	6, 162, 327, 492
BlsI	GCNGC	4 cut(s)	7, 163, 328, 493
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	126, 662
BmiI	GGNNCC	1 cut(s)	127
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	3 cut(s)	320, 382, 613
BmuI	ACTGGG	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	482, 499
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	3 cut(s)	650, 651, 671
Bse1I	ACTGG	5 cut(s)	127, 129, 526, 557, 584
Bse8I	GATNNNNATC	1 cut(s)	833
BseGI	GGATG	3 cut(s)	465, 550, 588
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	3 cut(s)	650, 651, 671
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	5 cut(s)	127, 129, 526, 557, 584
BseRI	GAGGAG	2 cut(s)	470, 652
BseXI	GCAGC	4 cut(s)	17, 173, 338, 503
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	239, 664, 702
BslI	CCNNNNNNNGG	3 cut(s)	650, 651, 671
BsmAI	GTCTC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	239, 664, 702
Bso31I	GGTCTC	1 cut(s)	634
Bsp1407I	TGTACA	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	443, 462, 828
BspANI	GGCC	3 cut(s)	239, 664, 702
BspCNI	CTCAG	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	823
BspQI	GCTCTTC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	848
BsrI	ACTGG	5 cut(s)	127, 129, 526, 557, 584
BssMI	GATC	3 cut(s)	443, 462, 828
BssNI	GRCGYC	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	67, 591
BstACI	GRCGYC	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	646, 740
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	465, 550, 588
BstKTI	GATC	3 cut(s)	446, 465, 831
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	3 cut(s)	443, 462, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 323, 332, 661
BstNSI	RCATGY	1 cut(s)	864
BstPI	GGTNACC	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	17, 173, 338, 503
BstV2I	GAAGAC	2 cut(s)	482, 499
BsuI	GTATCC	2 cut(s)	172, 288
BsuRI	GGCC	3 cut(s)	239, 664, 702
BtsCI	GGATG	3 cut(s)	465, 550, 588
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	657
Cfr13I	GGNCC	2 cut(s)	126, 662
Csp6I	GTAC	1 cut(s)	849
CviAII	CATG	5 cut(s)	241, 356, 668, 794, 861
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	2 cut(s)	646, 740
DpnI	GATC	3 cut(s)	445, 464, 830
DpnII	GATC	3 cut(s)	443, 462, 828
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	67, 591
EarI	CTCTTC	2 cut(s)	67, 591
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	3 cut(s)	134, 615, 771
Eco91I	GGTNACC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	339
FaeI	CATG	5 cut(s)	244, 359, 671, 797, 864
FatI	CATG	5 cut(s)	240, 355, 667, 793, 860
Fnu4HI	GCNGC	4 cut(s)	6, 162, 327, 492
FokI	GGATG	3 cut(s)	452, 557, 595
Fsp4HI	GCNGC	4 cut(s)	6, 162, 327, 492
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	4 cut(s)	6, 162, 327, 492
HaeIII	GGCC	3 cut(s)	239, 664, 702
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	244, 359, 671, 797, 864
HinfI	GANTC	4 cut(s)	458, 568, 783, 798
HphI	GGTGA	7 cut(s)	15, 214, 344, 464, 577, 632, 682
Hpy188I	TCNGA	2 cut(s)	114, 518
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	88, 692
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	302, 708
HpyCH4V	TGCA	7 cut(s)	37, 84, 244, 259, 317, 383, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 323, 332, 661
HpyF3I	CTNAG	2 cut(s)	646, 740
HpySE526I	ACGT	2 cut(s)	302, 708
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	244, 359, 671, 797, 864
Kzo9I	GATC	3 cut(s)	443, 462, 828
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	4 cut(s)	17, 173, 338, 503
LweI	GCATC	3 cut(s)	320, 382, 613
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	2 cut(s)	302, 708
MaeIII	GTNAC	2 cut(s)	350, 688
MalI	GATC	3 cut(s)	445, 464, 830
MboI	GATC	3 cut(s)	443, 462, 828
MboII	GAAGA	6 cut(s)	84, 127, 419, 487, 499, 608
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	339, 372, 735
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	467, 792
Mox20I	TGGCCA	1 cut(s)	239
MroXI	GAANNNNTTC	2 cut(s)	106, 802
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	4 cut(s)	189, 278, 485, 818
Msp20I	TGGCCA	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	37
MwoI	GCNNNNNNNGC	4 cut(s)	11, 323, 332, 661
NdeII	GATC	3 cut(s)	443, 462, 828
NlaIII	CATG	5 cut(s)	244, 359, 671, 797, 864
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	350, 688
NspI	RCATGY	1 cut(s)	864
PaqCI	CACCTGC	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	67
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	2 cut(s)	106, 802
PfeI	GAWTC	2 cut(s)	568, 798
PkrI	GCNGC	4 cut(s)	7, 163, 328, 493
PleI	GAGTC	2 cut(s)	466, 791
PpsI	GAGTC	2 cut(s)	466, 791
Psp1406I	AACGTT	1 cut(s)	708
PspEI	GGTNACC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	126, 662
PsrI	GAACNNNNNNTAC	2 cut(s)	532, 564
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	189, 278, 485, 818
SatI	GCNGC	4 cut(s)	6, 162, 327, 492
Sau3AI	GATC	3 cut(s)	443, 462, 828
Sau96I	GGNCC	2 cut(s)	126, 662
SchI	GAGTC	2 cut(s)	467, 792
SfaNI	GCATC	3 cut(s)	320, 382, 613
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	3 cut(s)	339, 372, 735
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	1 cut(s)	686
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	305, 711
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	339, 372, 735
TatI	WGTACW	1 cut(s)	848
TfiI	GAWTC	2 cut(s)	568, 798
Tru1I	TTAA	4 cut(s)	189, 278, 485, 818
Tru9I	TTAA	4 cut(s)	189, 278, 485, 818
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	350, 688
TseI	GCWGC	4 cut(s)	5, 161, 326, 491
Tsp45I	GTSAC	2 cut(s)	350, 688
TspDTI	ATGAA	2 cut(s)	30, 499
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	106, 802
XspI	CTAG	1 cut(s)	686
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.