Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Reverse (-)

23105755 .. 23108394

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCATTGGCAGCCATAGCCACAGCTTCATCAAATCCCCTGCATTCTTCTTCTCTAGCTTTCACAACTTCCACAGGAAGAGGAGGAGGAGGCAGCTGCTGCACAAGGACAAGGAGGAGGAGCCATTGCCTAAAGATTACTGGGTCCAATCCAGCTCATGACTCTGCTCTTTTCCAAGCAGCCCACCACACTGTGGATACTTACATTAAAAGTGGTATGGTAATTGGATTGGGGTCTGGCCAAGCTTCTGGTATGGCCATACAGTATATAGGTCTGCAACTTGGTGCAGGTGCTTTGAAAGATATAGTCGGGATACCAACGTCCGTAGCATGCGCAAGCGAGGCAGCAAGGGCAGGAATTCCATTGGGTCACTACAAGTATTGTTCTCAAATTGACTTTGCATTTGATGATGCTGATGTATTAGAAGAAAGGACACTTATTGCTGTCATTGGACGATCTAGATTGCAGGCTGAGGAGTCCATAATCCAAGAGAAGGCGATACTAAACGCAGCAGATAAACTTGTGTTCATGACCACAGAAAAACAGTACAAAAGTGGTTCGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGTTGCAAGCTGCTGAAGAAATTGATGACCTTTTTTTAGGCGATGCCGAGGTATGGAGAAGACCATCAGCTGGACTGGCAGGTCCTAATGGGGGTGACTTCCCACTAGTCACCAACGAAGGCCATAATGTTCTTGATATCATATTTACGTCTCCAATCCTAAGCCTCGCTGAAGTATCGAACAGCCTTGATGAAGTTGATGGGGTCGTAGACCACGGAATTATTTCCAAGTTCCCATGCATGGCAGTAATCGCTTCGGAAAGTGGACTGTCTGTTGTTGATAATCTGCCTAAGAATGCCGTGAAGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

304

Amino Acids

31.73

Weight (kDa)

5.13

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	103 - 288	2.3e-32	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
AasI	GACNNNNNNGTC	1 cut(s)	678
Acc16I	TGCGCA	1 cut(s)	334
Acc36I	ACCTGC	2 cut(s)	278, 668
AccB7I	CCANNNNNTGG	2 cut(s)	193, 668
AccI	GTMKAC	1 cut(s)	807
AcoI	YGGCCR	2 cut(s)	238, 255
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	2 cut(s)	633, 789
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	6 cut(s)	193, 493, 651, 668, 689, 838
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	703
AluBI	AGCT	7 cut(s)	26, 59, 96, 155, 245, 608, 668
AluI	AGCT	7 cut(s)	26, 59, 96, 155, 245, 608, 668
Alw26I	GTCTC	1 cut(s)	753
AlwNI	CAGNNNCTG	1 cut(s)	99
AoxI	GGCC	3 cut(s)	238, 255, 718
ApeKI	GCWGC	8 cut(s)	11, 93, 96, 99, 179, 344, 509, 608
ApoI	RAATTY	1 cut(s)	357
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	820
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	144, 680
AsuHPI	GGTGA	3 cut(s)	595, 700, 704
AvaII	GGWCC	2 cut(s)	144, 680
BaeI	ACNNNNGTAYC	2 cut(s)	305, 338
BalI	TGGCCA	2 cut(s)	240, 257
BbsI	GAAGAC	1 cut(s)	664
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	8 cut(s)	23, 83, 86, 105, 191, 356, 521, 595
BccI	CCATC	3 cut(s)	557, 670, 791
BceAI	ACGGC	1 cut(s)	881
BciVI	GTATCC	2 cut(s)	190, 306
BcoDI	GTCTC	1 cut(s)	753
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	3 cut(s)	56, 459, 704
BfuAI	ACCTGC	2 cut(s)	278, 668
BfuI	GTATCC	2 cut(s)	190, 306
BisI	GCNGC	8 cut(s)	12, 94, 97, 100, 180, 345, 510, 609
BlsI	GCNGC	8 cut(s)	13, 95, 98, 101, 181, 346, 511, 610
Bme18I	GGWCC	2 cut(s)	144, 680
BmgT120I	GGNCC	2 cut(s)	144, 680
BmiI	GGNNCC	3 cut(s)	122, 145, 906
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	400, 631
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	664
Bpu10I	CCTNAGC	2 cut(s)	471, 758
BsaJI	CCNNGG	2 cut(s)	645, 811
Bsc4I	CCNNNNNNNGG	6 cut(s)	193, 493, 651, 668, 689, 838
Bse1I	ACTGG	4 cut(s)	145, 575, 602, 678
Bse3DI	GCAATG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	645, 811
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	6 cut(s)	193, 493, 651, 668, 689, 838
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	4 cut(s)	145, 575, 602, 678
BseRI	GAGGAG	6 cut(s)	96, 99, 102, 130, 133, 488
BseXI	GCAGC	8 cut(s)	23, 83, 86, 105, 191, 356, 521, 595
BsgI	GTGCAG	2 cut(s)	85, 306
BshFI	GGCC	3 cut(s)	240, 257, 720
BslI	CCNNNNNNNGG	6 cut(s)	193, 493, 651, 668, 689, 838
BsmAI	GTCTC	1 cut(s)	753
BsmBI	CGTCTC	1 cut(s)	753
BsmI	GAATGC	2 cut(s)	43, 898
BsnI	GGCC	3 cut(s)	240, 257, 720
Bsp143I	GATC	1 cut(s)	455
BspANI	GGCC	3 cut(s)	240, 257, 720
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	2 cut(s)	157, 528
BspLI	GGNNCC	3 cut(s)	122, 145, 906
BspMI	ACCTGC	2 cut(s)	278, 668
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	4 cut(s)	145, 575, 602, 678
BssECI	CCNNGG	2 cut(s)	645, 811
BssMI	GATC	1 cut(s)	455
Bst4CI	ACNGT	4 cut(s)	193, 264, 546, 867
Bst6I	CTCTTC	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	331, 337, 468, 606
BstDEI	CTNAG	3 cut(s)	471, 758, 888
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	458
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 17, 99, 341, 350, 674, 848
BstNSI	RCATGY	1 cut(s)	333
BstV1I	GCAGC	8 cut(s)	23, 83, 86, 105, 191, 356, 521, 595
BstV2I	GAAGAC	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuI	GTATCC	2 cut(s)	190, 306
BsuRI	GGCC	3 cut(s)	240, 257, 720
BtgI	CCRYGG	1 cut(s)	811
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	2 cut(s)	278, 668
Cac8I	GCNNGC	4 cut(s)	331, 337, 468, 606
CaiI	CAGNNNCTG	1 cut(s)	99
CciI	TCATGA	2 cut(s)	157, 528
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	144, 680
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	5 cut(s)	158, 330, 529, 834, 838
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	3 cut(s)	471, 758, 888
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
DraIII	CACNNNGTG	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	678
DseDI	GACNNNNNNGTC	1 cut(s)	678
EaeI	YGGCCR	2 cut(s)	238, 255
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	144, 680
Eco57I	CTGAAG	2 cut(s)	633, 789
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	753
FaeI	CATG	5 cut(s)	161, 333, 532, 837, 841
FatI	CATG	5 cut(s)	157, 329, 528, 833, 837
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	8 cut(s)	12, 94, 97, 100, 180, 345, 510, 609
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	8 cut(s)	12, 94, 97, 100, 180, 345, 510, 609
FspBI	CTAG	3 cut(s)	56, 459, 704
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	8 cut(s)	12, 94, 97, 100, 180, 345, 510, 609
HaeIII	GGCC	3 cut(s)	240, 257, 720
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	5 cut(s)	161, 333, 532, 837, 841
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	3 cut(s)	161, 476, 586
HphI	GGTGA	3 cut(s)	595, 700, 704
Hpy166II	GTNNAC	2 cut(s)	808, 863
Hpy188I	TCNGA	2 cut(s)	562, 856
Hpy188III	TCNNGA	5 cut(s)	158, 310, 459, 529, 731
Hpy8I	GTNNAC	2 cut(s)	808, 863
HpyAV	CCTTC	3 cut(s)	487, 710, 895
HpyCH4III	ACNGT	4 cut(s)	193, 264, 546, 867
HpyCH4IV	ACGT	2 cut(s)	320, 746
HpyCH4V	TGCA	8 cut(s)	43, 102, 277, 287, 401, 466, 604, 837
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 17, 99, 341, 350, 674, 848
HpyF3I	CTNAG	3 cut(s)	471, 758, 888
HpySE526I	ACGT	2 cut(s)	320, 746
Hsp92II	CATG	5 cut(s)	161, 333, 532, 837, 841
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	8 cut(s)	23, 83, 86, 105, 191, 356, 521, 595
LweI	GCATC	2 cut(s)	400, 631
MaeI	CTAG	3 cut(s)	56, 459, 704
MaeII	ACGT	2 cut(s)	320, 746
MaeIII	GTNAC	3 cut(s)	368, 692, 706
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MboII	GAAGA	6 cut(s)	39, 42, 90, 437, 626, 669
MlsI	TGGCCA	2 cut(s)	240, 257
MluCI	AATT	5 cut(s)	222, 357, 390, 618, 816
MluNI	TGGCCA	2 cut(s)	240, 257
MlyI	GAGTC	2 cut(s)	155, 485
Mox20I	TGGCCA	2 cut(s)	240, 257
Mph1103I	ATGCAT	1 cut(s)	839
MroXI	GAANNNNTTC	1 cut(s)	820
MscI	TGGCCA	2 cut(s)	240, 257
MseI	TTAA	2 cut(s)	207, 910
Msp20I	TGGCCA	2 cut(s)	240, 257
MspA1I	CMGCKG	2 cut(s)	96, 668
Mva1269I	GAATGC	2 cut(s)	43, 898
MwoI	GCNNNNNNNGC	7 cut(s)	11, 17, 99, 341, 350, 674, 848
NdeII	GATC	1 cut(s)	455
NlaIII	CATG	5 cut(s)	161, 333, 532, 837, 841
NlaIV	GGNNCC	3 cut(s)	122, 145, 906
NmeAIII	GCCGAG	1 cut(s)	670
NmuCI	GTSAC	3 cut(s)	368, 692, 706
NsbI	TGCGCA	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	839
NspI	RCATGY	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	333
PagI	TCATGA	2 cut(s)	157, 528
PaqCI	CACCTGC	1 cut(s)	278
PctI	GAATGC	2 cut(s)	43, 898
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	1 cut(s)	586
PflMI	CCANNNNNTGG	2 cut(s)	193, 668
PkrI	GCNGC	8 cut(s)	13, 95, 98, 101, 181, 346, 511, 610
PleI	GAGTC	2 cut(s)	155, 484
PpsI	GAGTC	2 cut(s)	155, 484
PpuMI	RGGWCCY	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	680
PspN4I	GGNNCC	3 cut(s)	122, 145, 906
PspPI	GGNCC	2 cut(s)	144, 680
PspPPI	RGGWCCY	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	99
PvuII	CAGCTG	2 cut(s)	96, 668
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	207, 910
SatI	GCNGC	8 cut(s)	12, 94, 97, 100, 180, 345, 510, 609
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	2 cut(s)	144, 680
SchI	GAGTC	2 cut(s)	155, 485
SfaNI	GCATC	2 cut(s)	400, 631
SinI	GGWCC	2 cut(s)	144, 680
SpeI	ACTAGT	1 cut(s)	703
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	5 cut(s)	222, 357, 390, 618, 816
SspMI	CTAG	3 cut(s)	56, 459, 704
TaaI	ACNGT	4 cut(s)	193, 264, 546, 867
TaiI	ACGT	2 cut(s)	323, 749
TaqI	TCGA	1 cut(s)	776
TasI	AATT	5 cut(s)	222, 357, 390, 618, 816
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	207, 910
Tru9I	TTAA	2 cut(s)	207, 910
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	3 cut(s)	368, 692, 706
TseI	GCWGC	8 cut(s)	11, 93, 96, 99, 179, 344, 509, 608
Tsp45I	GTSAC	3 cut(s)	368, 692, 706
TspDTI	ATGAA	3 cut(s)	18, 517, 804
TspGWI	ACGGA	2 cut(s)	313, 828
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	2 cut(s)	193, 668
VpaK11BI	GGWCC	2 cut(s)	144, 680
XapI	RAATTY	1 cut(s)	357
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	3 cut(s)	56, 459, 704
Zsp2I	ATGCAT	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.