Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006749

Physical Location & Seq

Genomic Coordinates Forward (+)

13926259 .. 13930285

Gene Structure 4027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCACTGGCAATGGCAGCCATAGCAATAGCTTCACCAAATCCCCTGCATTCATCTCTAACTTTATCAAATGCCAGAGGCAGAAGAGCCTTCTGCACAAGAACAAGAACAAGAAGAAGAACCCATTCTCTGAAGATTACTGGGTCCAGTCTTGCTGATGGCTCTGCTCTTTTTCAAGCAGCCCATTACACTGTGGATACCTACATTAAAAGTGGTATGGTGATTGGGTTGGGGTCTGGTATAGCTTCTGGTATGGCCATGCAGTATATAGGTCTGCAACTTGGAGCAGGTGCTTTAAAGGATATAGTGGGGATACCAACGTCTGTAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACTATGAGGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGATCGCAGGGTGAGGAGTCGATCATCCAAGAGAAGACTATATTAAACGCAGCCAATAAAGTTGTCTTCATTGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCAGTTTCCTCTAGTCACCAGAGAGGGCCATAACGTTATTGATGTCATATTTACATCTCCAATTCTAAGCCTCGCTGAAGTATCAATGAGCCTTGATAATATTGATGGAGTCATAGAGCATGGAATCATTTCCAAGTTCCCATGCACTGCAGTAATTGCTTCGGAAAGTGGGCCGTCTGTTGTTGATAATGTGCCAAAGAATTCAGTAAAGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

303

Amino Acids

32.17

Weight (kDa)

5.39

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	103 - 288	3.5e-36	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44520 AT5G44520
fragaria_vesca	FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560 FvH4_3g11560
malus_domestica	MD10G1240700.v1.1
prunus_persica	Prupe.4G102900_v2.0.a1
pyrus_communis	pycom10g20140
rosa_chinensis	RchiOBHm_Chr5g0018511
rosa_laevigata	RLG00000032372 RLG00000032374
rosa_multiflora	Rmu_sc0002579.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059230
rosa_rugosa	Rorug05G0044800 Rorug05G0044900.1 Rorug05G0045000
rosa_samantha	Rh5AG135900 Rh5BG134800 Rh5CG146900 Rh5DG136000
rosa_wichuraiana	Rw5G012040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	726
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	357, 892
AcuI	CTGAAG	3 cut(s)	152, 633, 789
AfiI	CCNNNNNNNGG	3 cut(s)	668, 669, 689
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	32, 245
AluI	AGCT	2 cut(s)	32, 245
Alw26I	GTCTC	1 cut(s)	652
AoxI	GGCC	4 cut(s)	255, 680, 718, 863
ApeKI	GCWGC	4 cut(s)	17, 179, 344, 509
ApoI	RAATTY	2 cut(s)	357, 892
Asp700I	GAANNNNTTC	2 cut(s)	124, 820
AspS9I	GGNCC	4 cut(s)	144, 680, 718, 863
AsuHPI	GGTGA	6 cut(s)	27, 232, 482, 595, 650, 700
AvaII	GGWCC	1 cut(s)	144
BaeI	ACNNNNGTAYC	2 cut(s)	305, 338
BalI	TGGCCA	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	500, 517
BbvI	GCAGC	4 cut(s)	29, 191, 356, 521
BccI	CCATC	4 cut(s)	152, 557, 595, 791
BceAI	ACGGC	1 cut(s)	850
BciVI	GTATCC	2 cut(s)	190, 306
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	2 cut(s)	324, 840
BfuAI	ACCTGC	1 cut(s)	278
BfuI	GTATCC	2 cut(s)	190, 306
BisI	GCNGC	4 cut(s)	18, 180, 345, 510
BlsI	GCNGC	4 cut(s)	19, 181, 346, 511
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	4 cut(s)	144, 680, 718, 863
BmiI	GGNNCC	2 cut(s)	145, 906
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	3 cut(s)	338, 400, 631
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	2 cut(s)	500, 517
BsaI	GGTCTC	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	3 cut(s)	668, 669, 689
Bse1I	ACTGG	6 cut(s)	12, 145, 147, 544, 575, 602
Bse3DI	GCAATG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	483, 568, 606
BseLI	CCNNNNNNNGG	3 cut(s)	668, 669, 689
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	6 cut(s)	12, 145, 147, 544, 575, 602
BseRI	GAGGAG	2 cut(s)	488, 670
BseXI	GCAGC	4 cut(s)	29, 191, 356, 521
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	257, 682, 720, 865
BslI	CCNNNNNNNGG	3 cut(s)	668, 669, 689
BsmAI	GTCTC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	257, 682, 720, 865
Bso31I	GGTCTC	1 cut(s)	652
Bsp143I	GATC	2 cut(s)	461, 480
BspANI	GGCC	4 cut(s)	257, 682, 720, 865
BspCNI	CTCAG	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	145, 906
BspMAI	CTGCAG	1 cut(s)	844
BspMI	ACCTGC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	6 cut(s)	12, 145, 147, 544, 575, 602
BssMI	GATC	2 cut(s)	461, 480
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	79, 609
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	2 cut(s)	664, 758
BstF5I	GGATG	3 cut(s)	483, 568, 606
BstKTI	GATC	2 cut(s)	464, 483
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	2 cut(s)	461, 480
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 23, 341, 350, 679, 848
BstSFI	CTRYAG	2 cut(s)	324, 840
BstV1I	GCAGC	4 cut(s)	29, 191, 356, 521
BstV2I	GAAGAC	2 cut(s)	500, 517
BsuI	GTATCC	2 cut(s)	190, 306
BsuRI	GGCC	4 cut(s)	257, 682, 720, 865
BtsCI	GGATG	3 cut(s)	483, 568, 606
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	5, 189, 837
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	675
Cfr13I	GGNCC	4 cut(s)	144, 680, 718, 863
CviAII	CATG	4 cut(s)	259, 686, 812, 834
DdeI	CTNAG	2 cut(s)	664, 758
DpnI	GATC	2 cut(s)	463, 482
DpnII	GATC	2 cut(s)	461, 480
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	79, 609
EarI	CTCTTC	2 cut(s)	79, 609
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	3 cut(s)	152, 633, 789
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRI	GAATTC	2 cut(s)	357, 892
FaeI	CATG	4 cut(s)	262, 689, 815, 837
FatI	CATG	4 cut(s)	258, 685, 811, 833
Fnu4HI	GCNGC	4 cut(s)	18, 180, 345, 510
FokI	GGATG	3 cut(s)	470, 575, 613
Fsp4HI	GCNGC	4 cut(s)	18, 180, 345, 510
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	4 cut(s)	18, 180, 345, 510
HaeIII	GGCC	4 cut(s)	257, 682, 720, 865
Hin1II	CATG	4 cut(s)	262, 689, 815, 837
HinfI	GANTC	4 cut(s)	476, 586, 801, 816
HphI	GGTGA	6 cut(s)	27, 232, 482, 595, 650, 700
Hpy188I	TCNGA	3 cut(s)	132, 536, 856
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	320, 726
HpyCH4V	TGCA	9 cut(s)	49, 96, 262, 277, 335, 401, 644, 837, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 23, 341, 350, 679, 848
HpyF3I	CTNAG	2 cut(s)	664, 758
HpySE526I	ACGT	2 cut(s)	320, 726
Hsp92II	CATG	4 cut(s)	262, 689, 815, 837
Kzo9I	GATC	2 cut(s)	461, 480
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	4 cut(s)	29, 191, 356, 521
LweI	GCATC	3 cut(s)	338, 400, 631
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	2 cut(s)	320, 726
MaeIII	GTNAC	2 cut(s)	368, 706
MalI	GATC	2 cut(s)	463, 482
MboI	GATC	2 cut(s)	461, 480
MboII	GAAGA	8 cut(s)	96, 126, 129, 145, 437, 505, 517, 626
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	5 cut(s)	357, 390, 753, 846, 892
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	485, 810
Mox20I	TGGCCA	1 cut(s)	257
MroXI	GAANNNNTTC	2 cut(s)	124, 820
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	4 cut(s)	207, 296, 503, 910
Msp20I	TGGCCA	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	6 cut(s)	17, 23, 341, 350, 679, 848
NdeII	GATC	2 cut(s)	461, 480
NlaIII	CATG	4 cut(s)	262, 689, 815, 837
NlaIV	GGNNCC	2 cut(s)	145, 906
NmuCI	GTSAC	2 cut(s)	368, 706
PaqCI	CACCTGC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	124, 820
PfeI	GAWTC	2 cut(s)	586, 816
PkrI	GCNGC	4 cut(s)	19, 181, 346, 511
PleI	GAGTC	2 cut(s)	484, 809
PpsI	GAGTC	2 cut(s)	484, 809
Psp1406I	AACGTT	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	145, 906
PspPI	GGNCC	4 cut(s)	144, 680, 718, 863
PsrI	GAACNNNNNNTAC	2 cut(s)	550, 582
PstI	CTGCAG	1 cut(s)	844
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	4 cut(s)	207, 296, 503, 910
SatI	GCNGC	4 cut(s)	18, 180, 345, 510
Sau3AI	GATC	2 cut(s)	461, 480
Sau96I	GGNCC	4 cut(s)	144, 680, 718, 863
SchI	GAGTC	2 cut(s)	485, 810
SfaNI	GCATC	3 cut(s)	338, 400, 631
SfcI	CTRYAG	2 cut(s)	324, 840
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	5 cut(s)	357, 390, 753, 846, 892
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	704
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	323, 729
TaqI	TCGA	1 cut(s)	479
TasI	AATT	5 cut(s)	357, 390, 753, 846, 892
TfiI	GAWTC	2 cut(s)	586, 816
Tru1I	TTAA	4 cut(s)	207, 296, 503, 910
Tru9I	TTAA	4 cut(s)	207, 296, 503, 910
TscAI	CASTG	3 cut(s)	12, 196, 844
TseFI	GTSAC	2 cut(s)	368, 706
TseI	GCWGC	4 cut(s)	17, 179, 344, 509
Tsp45I	GTSAC	2 cut(s)	368, 706
TspDTI	ATGAA	2 cut(s)	42, 517
TspRI	CASTG	3 cut(s)	12, 196, 844
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	357, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmnI	GAANNNNTTC	2 cut(s)	124, 820
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.