RLG00000032372

Ribose-5-phosphate isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006749
Physical Location & Seq
Forward (+)
14096543 .. 14099676
3134 bp
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UTR
Exon/CDS
Intron
RLM00000032372

Sequence Viewer

Length: 426 bp
ATGATCGAATACATTGTCTTCACAATCAATGTTCCTCCCGAGTCTATAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACCATGAGGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATCGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGATCGCAGGGTGAGGAGTCGATAATCCAAGAGAAGACTATATTAAATGCAGCCAATAAGGTTGTCTTCATCGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCAGTTCCTCTAG

Protein Analysis

142

Amino Acids

15.47

Weight (kDa)

4.42

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 13 - 128 5.6e-20 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 354
AfiI CCNNNNNNNGG 3 cut(s) 389, 390, 410
Alw26I GTCTC 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 65, 230
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 4 cut(s) 83, 203, 316, 371
AvaI CYCGRG 1 cut(s) 38
BbsI GAAGAC 3 cut(s) 10, 221, 238
BbvI GCAGC 2 cut(s) 77, 242
BccI CCATC 2 cut(s) 278, 316
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 66, 231
BlsI GCNGC 2 cut(s) 67, 232
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 401
BmsI GCATC 3 cut(s) 59, 121, 352
BpiI GAAGAC 3 cut(s) 10, 221, 238
BsaI GGTCTC 1 cut(s) 373
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 390, 410
Bse1I ACTGG 3 cut(s) 265, 296, 323
BseGI GGATG 2 cut(s) 289, 327
BseLI CCNNNNNNNGG 3 cut(s) 389, 390, 410
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 3 cut(s) 265, 296, 323
BseRI GAGGAG 2 cut(s) 209, 391
BseXI GCAGC 2 cut(s) 77, 242
BshFI GGCC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 389, 390, 410
BsmAI GTCTC 1 cut(s) 373
BsnI GGCC 1 cut(s) 403
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 2 cut(s) 3, 182
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 373
BsrI ACTGG 3 cut(s) 265, 296, 323
BssMI GATC 2 cut(s) 3, 182
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 385
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 289, 327
BstKTI GATC 2 cut(s) 6, 185
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 3, 182
BstMWI GCNNNNNNNGC 3 cut(s) 62, 71, 400
BstPI GGTNACC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 77, 242
BstV2I GAAGAC 3 cut(s) 10, 221, 238
BsuRI GGCC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 289, 327
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 2 cut(s) 95, 407
CviJI RGCY 3 cut(s) 233, 394, 403
CviKI_1 RGCY 3 cut(s) 233, 394, 403
DdeI CTNAG 1 cut(s) 385
DpnI GATC 2 cut(s) 5, 184
DpnII GATC 2 cut(s) 3, 182
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 78
FaeI CATG 2 cut(s) 98, 410
FaiI YATR 7 cut(s) 47, 96, 221, 270, 281, 373, 408
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 2 cut(s) 94, 406
Fnu4HI GCNGC 2 cut(s) 66, 231
FokI GGATG 2 cut(s) 296, 334
Fsp4HI GCNGC 2 cut(s) 66, 231
FspBI CTAG 1 cut(s) 424
GluI GCNGC 2 cut(s) 66, 231
HaeIII GGCC 1 cut(s) 403
Hin1II CATG 2 cut(s) 98, 410
HinfI GANTC 3 cut(s) 41, 197, 307
HphI GGTGA 4 cut(s) 83, 203, 316, 371
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 56, 122, 230, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 71, 400
HpyF3I CTNAG 1 cut(s) 385
Hsp92II CATG 2 cut(s) 98, 410
Kzo9I GATC 2 cut(s) 3, 182
LpnPI CCDG 8 cut(s) 60, 173, 278, 304, 309, 362, 380, 384
Lsp1109I GCAGC 2 cut(s) 77, 242
LweI GCATC 3 cut(s) 59, 121, 352
MaeI CTAG 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 5, 184
MboI GATC 2 cut(s) 3, 182
MboII GAAGA 5 cut(s) 10, 158, 226, 238, 347
MluCI AATT 2 cut(s) 78, 111
MlyI GAGTC 2 cut(s) 50, 206
MnlI CCTC 9 cut(s) 45, 55, 91, 187, 321, 361, 369, 394, 414
MseI TTAA 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 62, 71, 400
NdeII GATC 2 cut(s) 3, 182
NlaIII CATG 2 cut(s) 98, 410
NmuCI GTSAC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 67, 232
PleI GAGTC 2 cut(s) 49, 205
PpsI GAGTC 2 cut(s) 49, 205
PspEI GGTNACC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 401
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 66, 231
Sau3AI GATC 2 cut(s) 3, 182
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 2 cut(s) 50, 206
SetI ASST 4 cut(s) 243, 351, 361, 372
SfaNI GCATC 3 cut(s) 59, 121, 352
SfcI CTRYAG 1 cut(s) 45
Sse9I AATT 2 cut(s) 78, 111
SspMI CTAG 1 cut(s) 424
TaqI TCGA 3 cut(s) 6, 144, 200
TasI AATT 2 cut(s) 78, 111
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 65, 230
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 238
XapI RAATTY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.