Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Forward (+)

24241116 .. 24241677

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G282900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTCAAGCTATGATGCCGCTTAGGTGTGTTTTTGGTCATCCTCTTGATGCTTGTTGCGGCAGGCAGAGGCAGGAACTTCTCATCCAAAGCCTAAGAAAGTCCAGGGGGGTGCCTATAACAGAAAAGGACTCCATGATCCATAAATATGGGGTTACACAAGAGAATTGCTTTGCTCATCTTGACTTGAGCTTCAAGTTTTATGCCCTAAGTGGGGAAGTGAATGGTGTTTTGGGCCAAACATATGCAAGCAACTATGTGAGTAAGATTAAGATGGGTGTGGTGATGCCTGTTTTGGGTGGGGACAAAGAATTTGCATCCTCTAGTATCTTTGCCTCTGATTGTGCTGTTTCAAGGTTAAGTGGGGAATTTGTTAAGAACAACTCTTCAGACAGCTTTGAGTATATGAATTGTGCTAGTGGGACGGATGGCCGTGGAGTTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

150

Amino Acids

16.24

Weight (kDa)

7.6

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	2 cut(s)	20, 60
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	311, 368
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	3 cut(s)	213, 214, 296
AgsI	TTSAA	2 cut(s)	196, 354
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	11, 192, 396
AluI	AGCT	3 cut(s)	11, 192, 396
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	2 cut(s)	235, 430
ApoI	RAATTY	2 cut(s)	311, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	112
BccI	CCATC	2 cut(s)	268, 422
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	106
BfaI	CTAG	2 cut(s)	324, 417
BisI	GCNGC	2 cut(s)	20, 61
BlsI	GCNGC	2 cut(s)	21, 62
Bme1390I	CCNGG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	4 cut(s)	6, 40, 276, 326
Bpu10I	CCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	105, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 214, 296
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	105, 433
BseGI	GGATG	4 cut(s)	40, 84, 317, 433
BseLI	CCNNNNNNNGG	3 cut(s)	213, 214, 296
BshFI	GGCC	2 cut(s)	237, 432
BshNI	GGYRCC	1 cut(s)	112
BslFI	GGGAC	2 cut(s)	317, 436
BslI	CCNNNNNNNGG	3 cut(s)	213, 214, 296
BsmFI	GGGAC	2 cut(s)	317, 436
BsnI	GGCC	2 cut(s)	237, 432
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	2 cut(s)	20, 60
BspANI	GGCC	2 cut(s)	237, 432
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	105, 433
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	65, 250
BstDEI	CTNAG	3 cut(s)	23, 95, 209
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	40, 84, 317, 433
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	237, 432
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	40, 84, 317, 433
Cac8I	GCNNGC	2 cut(s)	65, 250
Cfr13I	GGNCC	1 cut(s)	235
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	7 cut(s)	5, 11, 93, 192, 237, 396, 432
CviKI_1	RGCY	7 cut(s)	5, 11, 93, 192, 237, 396, 432
DdeI	CTNAG	3 cut(s)	23, 95, 209
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	139
FaqI	GGGAC	2 cut(s)	317, 436
FatI	CATG	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	20, 61
FokI	GGATG	4 cut(s)	27, 71, 304, 440
Fsp4HI	GCNGC	2 cut(s)	20, 61
FspBI	CTAG	2 cut(s)	324, 417
GluI	GCNGC	2 cut(s)	20, 61
HaeIII	GGCC	2 cut(s)	237, 432
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	340, 391
Hpy188III	TCNNGA	2 cut(s)	47, 182
HpyCH4V	TGCA	2 cut(s)	248, 317
HpyF3I	CTNAG	3 cut(s)	23, 95, 209
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	49, 59, 91, 118, 303
LweI	GCATC	4 cut(s)	6, 40, 276, 326
MaeI	CTAG	2 cut(s)	324, 417
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	378
MluCI	AATT	4 cut(s)	166, 311, 368, 409
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	54, 63, 331, 346
MseI	TTAA	3 cut(s)	270, 359, 375
MslI	CAYNNNNRTG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	21, 62
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	270, 359, 375
SatI	GCNGC	2 cut(s)	20, 61
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	106
SetI	ASST	5 cut(s)	13, 29, 194, 359, 398
SfaNI	GCATC	4 cut(s)	6, 40, 276, 326
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	6, 187
SmoI	CTYRAG	2 cut(s)	6, 187
Sse9I	AATT	4 cut(s)	166, 311, 368, 409
SsiI	CCGC	2 cut(s)	20, 60
SspMI	CTAG	2 cut(s)	324, 417
StyD4I	CCNGG	1 cut(s)	104
TasI	AATT	4 cut(s)	166, 311, 368, 409
TauI	GCSGC	2 cut(s)	22, 63
Tru1I	TTAA	3 cut(s)	270, 359, 375
Tru9I	TTAA	3 cut(s)	270, 359, 375
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	440
XapI	RAATTY	2 cut(s)	311, 368
XspI	CTAG	2 cut(s)	324, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.