Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Forward (+)

9531537 .. 9533200

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTCAAGCTATGATGCGCTTAGGTGTGTTTTTGGTCATCCTCTTGATGCTTGTTGCGGCAGAGGCAGGAACTTCTCATCCAAAGCCTAAGAAAGTCCAGTGCAAGAACCAGGACTACCCTGATTGTTATTGCCTAGAGCTTACATGTCCTAGTGCTTGCCCTGAGCAATGTGAAGTTGACTGCGTCACATGCAGTCCTGTTTGCAACTGCAACAAGCCAGGGGCTGTGTGTCAAGACCCCAGATTCATTGGTGGTGATGGAATAACCTTCTACTTCCATGGCAAGAAAGACCAAGACTTCTGCATAGTTTCTGATTCAAATCTCCACATCAACGCCCACTTCATTGGCAAGAGAAACCAAAACATGAAGAGGGACTTCACTTGGGTGCAGTCTCTAGGGATCCTCTTTGGAAACCACAAACTCTTCATCGGTGCCAAAACCACGTCAACTTGGGATGACTCCAATGACCGTCTCTCCTTATCCATAGACGGCGAACCCATAAACCTCCCGGACAGCGAAGGTGCTAACTGGCAATCAATCTTATCACCAGGAGCACTCAGCATCACAAGGACGAAAAACACAAATTCGATAGAAATTGAAGCTGAAGGGAACTTCAAGATCAAAGCAGTGGTGGTGCCTATAACAGAAAAGGACTCCATGATCCATAAATATGGGGTTACGCAAGAGGATTGCTTTGCTCATCTTGACTTGAGCTTCAAGTTTTATGCCCTAAGTGGGGAAGTGAATGGTGTTTTGGGCCAAACATATGCAAGCAACTACGTGAGTAGGGTTAAGATGGGTGTGGTGATGCCTGTTTTGGGTGGGGACAAAGAATTTGCATCCTCTAGTATCTTTGCCTCTGATTGTGCGGTTTCACGGTTTAGTGGGGAATTTGTTAAGAACAACTCTTCAGACAGCTTCGAGTATATGAATTGTGCTAGTGGGACGGATGGCCGTGGAGTTGTTTGTAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

327

Amino Acids

35.69

Weight (kDa)

5.83

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	434, 637
AciI	CCGC	2 cut(s)	59, 872
AclWI	GGATC	3 cut(s)	397, 410, 658
AcoI	YGGCCR	1 cut(s)	955
AcsI	RAATTY	3 cut(s)	586, 836, 893
AcuI	CTGAAG	2 cut(s)	627, 897
AfiI	CCNNNNNNNGG	3 cut(s)	738, 739, 821
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	321, 602, 619, 721
AjiI	CACGTC	1 cut(s)	447
AjnI	CCWGG	3 cut(s)	111, 220, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AleI	CACNNNNGTG	1 cut(s)	386
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	5 cut(s)	11, 142, 605, 717, 921
AluI	AGCT	5 cut(s)	11, 142, 605, 717, 921
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	399, 479
AlwI	GGATC	3 cut(s)	397, 410, 658
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	760, 955
ApoI	RAATTY	3 cut(s)	586, 836, 893
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	269, 540, 820
BamHI	GGATCC	1 cut(s)	402
BanI	GGYRCC	2 cut(s)	434, 637
Bbv12I	GWGCWC	1 cut(s)	559
BccI	CCATC	3 cut(s)	254, 793, 947
BceAI	ACGGC	2 cut(s)	508, 942
BciT130I	CCWGG	3 cut(s)	113, 222, 552
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	399, 479
BfaI	CTAG	5 cut(s)	137, 153, 398, 849, 942
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	4 cut(s)	113, 222, 512, 552
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	3 cut(s)	404, 436, 639
BmrFI	CCNGG	4 cut(s)	113, 222, 512, 552
BmsI	GCATC	5 cut(s)	6, 39, 573, 801, 851
Bpu10I	CCTNAGC	2 cut(s)	22, 165
BpuEI	CTTGAG	1 cut(s)	733
BpuMI	CCSGG	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	784
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	221, 280, 958
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	738, 739, 821
Bse1I	ACTGG	2 cut(s)	100, 536
Bse3DI	GCAATG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	3 cut(s)	113, 222, 552
BseDI	CCNNGG	3 cut(s)	221, 280, 958
BseGI	GGATG	5 cut(s)	39, 79, 463, 842, 958
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	738, 739, 821
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	156, 574
BseNI	ACTGG	2 cut(s)	100, 536
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	2 cut(s)	762, 957
BshNI	GGYRCC	2 cut(s)	434, 637
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	3 cut(s)	389, 842, 961
BslI	CCNNNNNNNGG	3 cut(s)	738, 739, 821
BsmAI	GTCTC	2 cut(s)	399, 479
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	3 cut(s)	389, 842, 961
BsnI	GGCC	2 cut(s)	762, 957
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	402, 621, 663
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	59, 872
BspANI	GGCC	2 cut(s)	762, 957
BspCNI	CTCAG	2 cut(s)	157, 573
BspLI	GGNNCC	3 cut(s)	404, 436, 639
BspPI	GGATC	3 cut(s)	397, 410, 658
BspT107I	GGYRCC	2 cut(s)	434, 637
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	100, 536
BssECI	CCNNGG	3 cut(s)	221, 280, 958
BssMI	GATC	3 cut(s)	402, 621, 663
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	113, 222, 552
Bst4CI	ACNGT	2 cut(s)	473, 882
Bst6I	CTCTTC	3 cut(s)	365, 431, 916
BstBAI	YACGTR	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	160, 775
BstDEI	CTNAG	5 cut(s)	22, 90, 165, 560, 734
BstDSI	CCRYGG	2 cut(s)	280, 958
BstF5I	GGATG	5 cut(s)	39, 79, 463, 842, 958
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	405, 624, 666
BstMAI	GTCTC	2 cut(s)	399, 479
BstMBI	GATC	3 cut(s)	402, 621, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 192
BstNI	CCWGG	3 cut(s)	113, 222, 552
BstNSI	RCATGY	2 cut(s)	150, 195
BstSCI	CCNGG	4 cut(s)	111, 220, 510, 550
BstX2I	RGATCY	1 cut(s)	402
BstXI	CCANNNNNNTGG	2 cut(s)	347, 674
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	762, 957
BtgI	CCRYGG	2 cut(s)	280, 958
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	5 cut(s)	39, 79, 463, 842, 958
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	107, 636
Cac8I	GCNNGC	2 cut(s)	160, 775
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	760
CseI	GACGC	1 cut(s)	175
CviAII	CATG	5 cut(s)	147, 192, 281, 367, 661
DdeI	CTNAG	5 cut(s)	22, 90, 165, 560, 734
DpnI	GATC	3 cut(s)	404, 623, 665
DpnII	GATC	3 cut(s)	402, 621, 663
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	3 cut(s)	365, 431, 916
EarI	CTCTTC	3 cut(s)	365, 431, 916
Eco130I	CCWWGG	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	627, 897
EcoRII	CCWGG	3 cut(s)	111, 220, 550
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	5 cut(s)	150, 195, 284, 370, 664
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	3 cut(s)	389, 842, 961
FatI	CATG	5 cut(s)	146, 191, 280, 366, 660
FauNDI	CATATG	1 cut(s)	769
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	5 cut(s)	26, 66, 470, 829, 965
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	5 cut(s)	137, 153, 398, 849, 942
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	762, 957
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	150, 195, 284, 370, 664
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	181, 450
HindII	GTYRAC	2 cut(s)	181, 450
HinfI	GANTC	4 cut(s)	246, 317, 461, 656
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	3 cut(s)	269, 540, 820
Hpy166II	GTNNAC	2 cut(s)	181, 450
Hpy188I	TCNGA	3 cut(s)	316, 865, 916
Hpy188III	TCNNGA	4 cut(s)	46, 236, 619, 707
Hpy8I	GTNNAC	2 cut(s)	181, 450
HpyAV	CCTTC	3 cut(s)	280, 515, 602
HpyCH4III	ACNGT	2 cut(s)	473, 882
HpyCH4IV	ACGT	2 cut(s)	446, 783
HpyCH4V	TGCA	8 cut(s)	105, 195, 207, 213, 306, 391, 773, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 192
HpyF3I	CTNAG	5 cut(s)	22, 90, 165, 560, 734
HpySE526I	ACGT	2 cut(s)	446, 783
Hsp92II	CATG	5 cut(s)	150, 195, 284, 370, 664
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	402, 621, 663
LmnI	GCTCC	1 cut(s)	554
LweI	GCATC	5 cut(s)	6, 39, 573, 801, 851
MaeI	CTAG	5 cut(s)	137, 153, 398, 849, 942
MaeII	ACGT	2 cut(s)	446, 783
MaeIII	GTNAC	2 cut(s)	187, 679
MalI	GATC	3 cut(s)	404, 623, 665
MboI	GATC	3 cut(s)	402, 621, 663
MboII	GAAGA	3 cut(s)	382, 418, 903
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	5 cut(s)	586, 597, 836, 893, 934
MlyI	GAGTC	2 cut(s)	455, 650
MnlI	CCTC	9 cut(s)	53, 58, 366, 416, 518, 682, 856, 871, 969
MseI	TTAA	2 cut(s)	795, 900
MslI	CAYNNNNRTG	2 cut(s)	386, 672
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	113, 222, 512, 552
MvaI	CCWGG	3 cut(s)	113, 222, 552
MwoI	GCNNNNNNNGC	2 cut(s)	65, 192
NciI	CCSGG	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	3 cut(s)	402, 621, 663
NlaIII	CATG	5 cut(s)	150, 195, 284, 370, 664
NlaIV	GGNNCC	3 cut(s)	404, 436, 639
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	2 cut(s)	150, 195
OliI	CACNNNNGTG	1 cut(s)	386
PciI	ACATGT	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	246, 317
PflFI	GACNNNGTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	455, 650
PpsI	GAGTC	2 cut(s)	455, 650
Ppu21I	YACGTR	1 cut(s)	784
PscI	ACATGT	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	111, 220, 550
PspGI	CCWGG	3 cut(s)	111, 220, 550
PspN4I	GGNNCC	3 cut(s)	404, 436, 639
PspPI	GGNCC	1 cut(s)	760
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	402
PsyI	GACNNNGTC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	386, 672
SaqAI	TTAA	2 cut(s)	795, 900
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	402, 621, 663
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	2 cut(s)	455, 650
ScrFI	CCNGG	4 cut(s)	113, 222, 512, 552
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	5 cut(s)	6, 39, 573, 801, 851
SmiMI	CAYNNNNRTG	2 cut(s)	386, 672
SmlI	CTYRAG	2 cut(s)	6, 712
SmoI	CTYRAG	2 cut(s)	6, 712
Sse9I	AATT	5 cut(s)	586, 597, 836, 893, 934
SsiI	CCGC	2 cut(s)	59, 872
SspMI	CTAG	5 cut(s)	137, 153, 398, 849, 942
StyD4I	CCNGG	4 cut(s)	111, 220, 510, 550
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	473, 882
TaiI	ACGT	2 cut(s)	449, 786
TaqI	TCGA	2 cut(s)	590, 924
TasI	AATT	5 cut(s)	586, 597, 836, 893, 934
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	246, 317
Tru1I	TTAA	2 cut(s)	795, 900
Tru9I	TTAA	2 cut(s)	795, 900
TscAI	CASTG	2 cut(s)	107, 636
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	5 cut(s)	238, 334, 383, 418, 947
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	2 cut(s)	107, 636
Tth111I	GACNNNGTC	1 cut(s)	185
XapI	RAATTY	3 cut(s)	586, 836, 893
XceI	RCATGY	2 cut(s)	150, 195
XspI	CTAG	5 cut(s)	137, 153, 398, 849, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.