Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004354.1

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Reverse (-)

42619 .. 44194

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004354.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgaagttgtccaacctcaaagcatatctttcaccaccacctgccccttcagttgttcctactccccctcctccagctacaactccacctccgtcaccccctatctctaccccgtcgtcacaaccgatgcctcctgctactaccccatcaccaccgccatcccctattactactccatcaccacctttgtccacaccatcatcaccgccaccccctactcctactccatcaccaccttctacaccaccttctttctatcctccaccaccgccttcatcagaggccgcgggtgaaaagagagtcaaatgcaagaataagaactaccctcattgctatggtctggagctaagttgtcctagtgggtgccctgagcaatgtgaagttgactgcgtcacatgcagtcccgtttgtaactgcaacaaaccaggtgctgtttgccaagaccctagatttattggtggtgatggtataaccttctacttccatggcaagcgagaccaagacttctgtctcgtatctgattccaacatccacatcaacgcccatttcatcggaaaaagagaccaaaatatgaagagggacttcacttgggtccaatctgtaggtatcctctttgacaatcgcaagctcttcataggtgccaaaccaacctccacttgggatgacaccgtcgaccgcctaaccctagccattgacgacgaaaccattagccttgccgacaacgaaggcgcatattggcaatcacaaggactcaagatcagaaggagcaagaacacaaatgctgtagaaattgaagctgaagggaacttcaagatcaaagcagtggtggtgccgataacggagaaagagtcggtgatacacaggtatgggattacacaggaggattgctttgctcaccttgacttgagcttcaagttttatgccctaagtggggaagttaatggcgtgctaggacagacatacgctgagaactacgttagtagggtcaagatgggtgtcgtgatgcctgttttgggtggcgatagagaattttcatcgtctagcatctttgcctcggattgtgctgttgctaggtttagcggtgagtctagtgaaaagtccaagtatgctagtactatgaattgcgctagtgggatggatggccgtggagttgtttgtaagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

388

Amino Acids

41.85

Weight (kDa)

6.6

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AccB1I	GGYRCC	3 cut(s)	363, 638, 829
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	287
AciI	CCGC	7 cut(s)	155, 206, 269, 285, 287, 676, 1080
AcoI	YGGCCR	1 cut(s)	1141
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	2 cut(s)	33, 819
AfaI	GTAC	1 cut(s)	1114
AfiI	CCNNNNNNNGG	4 cut(s)	657, 930, 931, 1013
AgsI	TTSAA	3 cut(s)	794, 811, 913
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	5 cut(s)	77, 346, 628, 797, 909
AluI	AGCT	5 cut(s)	77, 346, 628, 797, 909
Alw26I	GTCTC	3 cut(s)	489, 515, 555
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	282, 1141
ApoI	RAATTY	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	731, 1127
AspS9I	GGNCC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	368
BaeI	ACNNNNGTAYC	2 cut(s)	848, 881
BanI	GGYRCC	3 cut(s)	363, 638, 829
BccI	CCATC	9 cut(s)	154, 166, 184, 205, 235, 458, 985, 1129, 1133
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	617
BcoDI	GTCTC	3 cut(s)	489, 515, 555
BfaI	CTAG	9 cut(s)	357, 447, 686, 950, 1041, 1071, 1089, 1110, 1128
BfmI	CTRYAG	2 cut(s)	600, 783
BfuAI	ACCTGC	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	1114
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	4 cut(s)	365, 593, 640, 831
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	117, 993, 1053
BoxI	GACNNNNGTC	1 cut(s)	507
BpmI	CTGGAG	2 cut(s)	57, 362
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	737, 925
BsaI	GGTCTC	2 cut(s)	489, 555
BsaJI	CCNNGG	4 cut(s)	285, 484, 1053, 1144
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 73, 82, 103, 208, 238, 833, 863
Bsc4I	CCNNNNNNNGG	4 cut(s)	657, 930, 931, 1013
Bse3DI	GCAATG	2 cut(s)	328, 380
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	285, 484, 1053, 1144
BseGI	GGATG	5 cut(s)	158, 528, 667, 1140, 1144
BseLI	CCNNNNNNNGG	4 cut(s)	657, 930, 931, 1013
BseMI	GCAATG	2 cut(s)	328, 380
BseMII	CTCAG	2 cut(s)	360, 957
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	2 cut(s)	284, 1143
BshNI	GGYRCC	3 cut(s)	363, 638, 829
BsiEI	CGRYCG	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	387, 593
BslI	CCNNNNNNNGG	4 cut(s)	657, 930, 931, 1013
BsmAI	GTCTC	3 cut(s)	489, 515, 555
BsmFI	GGGAC	2 cut(s)	387, 593
BsnI	GGCC	2 cut(s)	284, 1143
Bso31I	GGTCTC	2 cut(s)	489, 555
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	756, 813
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	7 cut(s)	155, 206, 269, 285, 287, 676, 1080
BspANI	GGCC	2 cut(s)	284, 1143
BspCNI	CTCAG	2 cut(s)	361, 958
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	4 cut(s)	365, 593, 640, 831
BspMI	ACCTGC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	635
BspT107I	GGYRCC	3 cut(s)	363, 638, 829
BspTNI	GGTCTC	2 cut(s)	489, 555
BsrDI	GCAATG	2 cut(s)	328, 380
BssECI	CCNNGG	4 cut(s)	285, 484, 1053, 1144
BssMI	GATC	2 cut(s)	756, 813
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	2 cut(s)	569, 635
BstC8I	GCNNGC	3 cut(s)	491, 626, 947
BstDEI	CTNAG	4 cut(s)	347, 369, 926, 966
BstDSI	CCRYGG	3 cut(s)	285, 484, 1144
BstF5I	GGATG	5 cut(s)	158, 528, 667, 1140, 1144
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	731, 1127
BstKTI	GATC	2 cut(s)	759, 816
BstMAI	GTCTC	3 cut(s)	489, 515, 555
BstMBI	GATC	2 cut(s)	756, 813
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	399
BstPAI	GACNNNNGTC	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	2 cut(s)	600, 783
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	284, 1143
BtgI	CCRYGG	3 cut(s)	285, 484, 1144
BtsCI	GGATG	5 cut(s)	158, 528, 667, 1140, 1144
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	491, 626, 947
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	2 cut(s)	731, 1127
Cfr13I	GGNCC	1 cut(s)	592
Cfr42I	CCGCGG	1 cut(s)	288
CseI	GACGC	1 cut(s)	379
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	1113
CviAII	CATG	2 cut(s)	396, 485
CviJI	RGCY	9 cut(s)	77, 284, 346, 628, 689, 711, 797, 909, 1143
CviKI_1	RGCY	9 cut(s)	77, 284, 346, 628, 689, 711, 797, 909, 1143
CviQI	GTAC	1 cut(s)	1113
DdeI	CTNAG	4 cut(s)	347, 369, 926, 966
DpnI	GATC	2 cut(s)	758, 815
DpnII	GATC	2 cut(s)	756, 813
EaeI	YGGCCR	1 cut(s)	1141
Eam1104I	CTCTTC	2 cut(s)	569, 635
EarI	CTCTTC	2 cut(s)	569, 635
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	489, 555
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	2 cut(s)	33, 819
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	399, 488
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 566, 598
FaqI	GGGAC	2 cut(s)	387, 593
FatI	CATG	2 cut(s)	395, 484
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	5 cut(s)	145, 515, 674, 1147, 1151
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	9 cut(s)	357, 447, 686, 950, 1041, 1071, 1089, 1110, 1128
GlaI	GCGC	2 cut(s)	730, 1126
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	57, 362
HaeIII	GGCC	2 cut(s)	284, 1143
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	731, 1127
Hin1II	CATG	2 cut(s)	399, 488
Hin6I	GCGC	2 cut(s)	729, 1125
HinP1I	GCGC	2 cut(s)	729, 1125
HincII	GTYRAC	2 cut(s)	385, 673
HindII	GTYRAC	2 cut(s)	385, 673
HinfI	GANTC	5 cut(s)	300, 521, 750, 848, 1085
Hpy166II	GTNNAC	3 cut(s)	192, 385, 673
Hpy188I	TCNGA	5 cut(s)	280, 520, 554, 761, 1057
Hpy188III	TCNNGA	5 cut(s)	341, 754, 811, 988, 1000
Hpy8I	GTNNAC	3 cut(s)	192, 385, 673
Hpy99I	CGWCG	3 cut(s)	118, 674, 701
HpyAV	CCTTC	8 cut(s)	57, 246, 258, 282, 484, 719, 756, 794
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	975
HpyCH4V	TGCA	3 cut(s)	309, 399, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	4 cut(s)	347, 369, 926, 966
HpySE526I	ACGT	1 cut(s)	975
Hsp92II	CATG	2 cut(s)	399, 488
HspAI	GCGC	2 cut(s)	729, 1125
KspI	CCGCGG	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	756, 813
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	343, 765
LweI	GCATC	3 cut(s)	117, 993, 1053
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	9 cut(s)	357, 447, 686, 950, 1041, 1071, 1089, 1110, 1128
MaeII	ACGT	1 cut(s)	975
MaeIII	GTNAC	4 cut(s)	93, 117, 391, 410
MalI	GATC	2 cut(s)	758, 815
MboI	GATC	2 cut(s)	756, 813
MboII	GAAGA	2 cut(s)	586, 622
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	3 cut(s)	789, 1028, 1120
MlyI	GAGTC	4 cut(s)	309, 744, 857, 1094
MmeI	TCCRAC	2 cut(s)	36, 549
MseI	TTAA	1 cut(s)	939
MslI	CAYNNNNRTG	2 cut(s)	333, 864
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	756, 813
NlaIII	CATG	2 cut(s)	399, 488
NlaIV	GGNNCC	4 cut(s)	365, 593, 640, 831
NmuCI	GTSAC	3 cut(s)	93, 117, 391
NspI	RCATGY	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	521
PflFI	GACNNNGTC	2 cut(s)	389, 668
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	4 cut(s)	308, 744, 856, 1093
PpsI	GAGTC	4 cut(s)	308, 744, 856, 1093
PshAI	GACNNNNGTC	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	4 cut(s)	365, 593, 640, 831
PspPI	GGNCC	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	431
PsyI	GACNNNGTC	2 cut(s)	389, 668
RsaI	GTAC	1 cut(s)	1114
RsaNI	GTAC	1 cut(s)	1113
RseI	CAYNNNNRTG	2 cut(s)	333, 864
SacII	CCGCGG	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	939
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	756, 813
Sau96I	GGNCC	1 cut(s)	592
ScaI	AGTACT	1 cut(s)	1114
SchI	GAGTC	4 cut(s)	309, 744, 857, 1094
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	368
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	117, 993, 1053
SfcI	CTRYAG	2 cut(s)	600, 783
Sfr303I	CCGCGG	1 cut(s)	288
SgrBI	CCGCGG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	2 cut(s)	333, 864
SmlI	CTYRAG	2 cut(s)	752, 904
SmoI	CTYRAG	2 cut(s)	752, 904
Sse9I	AATT	3 cut(s)	789, 1028, 1120
SsiI	CCGC	7 cut(s)	155, 206, 269, 285, 287, 676, 1080
SspMI	CTAG	9 cut(s)	357, 447, 686, 950, 1041, 1071, 1089, 1110, 1128
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	1 cut(s)	672
TasI	AATT	3 cut(s)	789, 1028, 1120
TatI	WGTACW	1 cut(s)	1112
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	939
Tru9I	TTAA	1 cut(s)	939
TscAI	CASTG	1 cut(s)	828
TseFI	GTSAC	3 cut(s)	93, 117, 391
Tsp45I	GTSAC	3 cut(s)	93, 117, 391
TspDTI	ATGAA	7 cut(s)	17, 264, 538, 587, 622, 1023, 1133
TspGWI	ACGGA	2 cut(s)	81, 854
TspRI	CASTG	1 cut(s)	828
Tth111I	GACNNNGTC	2 cut(s)	389, 668
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	1028
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	9 cut(s)	357, 447, 686, 950, 1041, 1071, 1089, 1110, 1128
ZrmI	AGTACT	1 cut(s)	1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.