Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007003.1

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Reverse (-)

1297 .. 3242

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

atgggaatgatgaccgaggcagccactcctccgggaattgcgaagaatcctagcaatgcaaggtgtttgataaagaagtacaagcattgttacaatttggtgcatgtgtgccccaagttttgtcccgataagtgcacagttgagtgtgtgtcatgtaaacccatctgttctgggggcacaacatctcccactacaccttcaccaacacctacacctacgccaccaactcctattccatcacctcccaaatattacccttctcctcctcctaaaactccgacaccaccaaccccaaccccaacaccgccaactccaactccatcacctcccaaatattatcctcctcctcctaaaacgcccacaccgcctactccaaccccaacaccaccaactccatcaccaccaactccaactcccacacccccaaccccgaccccaacacctccaactcccacatcgccaacccctactccctcacccccaacccccactccctcaccgccaaccccaaccccaagcccaactccctcacccccaacccctactccctcaccgccaacccctactccttcacctccatcaactcctactccaccaaagaaaggaaagtgcaagaacaagaactacccccagtgctacaacattgaacatgcatgccctagctcctgccctggtggatgtgaggtggattgtgtcacttgcaagccagtctgtaagtgcgatcaacccggagcagtgtgccaagaccctcgtttcataggcggtgacggcattaccttttacttccacggcaagaaaaaccacaatttctgcctcttatccgactccaaccttcacatcaatgcccacttcatcggcaagcgaaatgccaacatgaaacgcgacttcacatgggttcaatccatcgccatcctctttggaaaacaccaactcttcatcggcgcccaaaaaactgctgtatgggatgactccgttgaccgccttgccctctccttcgacggtgagccaatcaccctccgggaatacgaaggcgctaggtggcaatccgagagcttcccacatgtctcattcgtaagggtgggtgacaccaacaatgtgatggttgaagttgaaggcaagtttaggatcacagccaaggttgtgcctataactgaagaagactctagagttcacaactatggtgtgacaaaagatgatgcgttggctcatcttgatcttgggtttaagttcttctctttgagcaaccgagttaatggtgtgttgggtcagacttacagacccgattacgtgagccgggtcaagattggagccaacatgcctgtgatgggtggtgacagggagttccaaacttcaggacttttcgctgcggattgcgccattgctaggtttaatggtgctagcgactctgagaatgaagggtctgttgagggtttggtgtttccaagtttgaactgtgctagtgggattgatggtcgaggagttgtgtgcaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

498

Amino Acids

53.35

Weight (kDa)

8.68

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	941
AccII	CGCG	1 cut(s)	882
AciI	CCGC	7 cut(s)	305, 365, 500, 554, 762, 979, 1367
AclWI	GGATC	1 cut(s)	1133
AcuI	CTGAAG	2 cut(s)	1173, 1335
AcyI	GRCGYC	1 cut(s)	942
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	602, 1325, 1383
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	5 cut(s)	647, 899, 1106, 1112, 1450
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	2 cut(s)	663, 1053
AluI	AGCT	2 cut(s)	663, 1053
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	1069
Alw44I	GTGCAC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	1133
ApaLI	GTGCAC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	20, 1364
AspLEI	GCGC	3 cut(s)	944, 1034, 1376
AsuC2I	CCSGG	4 cut(s)	33, 729, 1019, 1295
AsuNHI	GCTAGC	1 cut(s)	1397
BaeGI	GKGCMC	3 cut(s)	113, 137, 179
BanI	GGYRCC	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	1164
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	32, 1351
BceAI	ACGGC	2 cut(s)	784, 805
BciT130I	CCWGG	1 cut(s)	672
BcnI	CCSGG	4 cut(s)	33, 729, 1019, 1295
BcoDI	GTCTC	1 cut(s)	1069
BfaI	CTAG	7 cut(s)	51, 660, 1035, 1164, 1383, 1398, 1458
BfoI	RGCGCY	2 cut(s)	945, 1035
BisI	GCNGC	2 cut(s)	21, 1365
BlsI	GCNGC	2 cut(s)	22, 1366
Bme1390I	CCNGG	5 cut(s)	33, 672, 729, 1019, 1295
BmiI	GGNNCC	2 cut(s)	943, 1309
BmrFI	CCNGG	5 cut(s)	33, 672, 729, 1019, 1295
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	1 cut(s)	1186
BmtI	GCTAGC	1 cut(s)	1401
BmuI	ACTGGG	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	1164
BpuMI	CCSGG	4 cut(s)	33, 729, 1019, 1295
BsaAI	YACGTR	1 cut(s)	1288
BsaHI	GRCGYC	1 cut(s)	942
BsaJI	CCNNGG	4 cut(s)	15, 670, 787, 1134
Bsc4I	CCNNNNNNNGG	3 cut(s)	602, 1325, 1383
Bse1I	ACTGG	2 cut(s)	631, 707
Bse3DI	GCAATG	2 cut(s)	61, 1377
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	4 cut(s)	15, 670, 787, 1134
BseGI	GGATG	3 cut(s)	683, 909, 970
BseLI	CCNNNNNNNGG	3 cut(s)	602, 1325, 1383
BseMI	GCAATG	2 cut(s)	61, 1377
BseMII	CTCAG	1 cut(s)	1398
BseNI	ACTGG	2 cut(s)	631, 707
BseRI	GAGGAG	6 cut(s)	18, 252, 255, 333, 336, 1491
BseSI	GKGCMC	3 cut(s)	113, 137, 179
BseXI	GCAGC	2 cut(s)	32, 1351
Bsh1236I	CGCG	1 cut(s)	882
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	32, 729, 1018, 1294
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	602, 1325, 1383
BsmAI	GTCTC	1 cut(s)	1069
BsmFI	GGGAC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	113, 137, 179
Bsp143I	GATC	3 cut(s)	721, 1125, 1213
BspACI	CCGC	7 cut(s)	305, 365, 500, 554, 762, 979, 1367
BspCNI	CTCAG	1 cut(s)	1399
BspFNI	CGCG	1 cut(s)	882
BspLI	GGNNCC	2 cut(s)	943, 1309
BspOI	GCTAGC	1 cut(s)	1401
BspPI	GGATC	1 cut(s)	1133
BspT107I	GGYRCC	1 cut(s)	941
BsrDI	GCAATG	2 cut(s)	61, 1377
BsrI	ACTGG	2 cut(s)	631, 707
BssECI	CCNNGG	4 cut(s)	15, 670, 787, 1134
BssMI	GATC	3 cut(s)	721, 1125, 1213
BssNI	GRCGYC	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	1134
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	139, 1001, 1454
Bst6I	CTCTTC	1 cut(s)	938
BstACI	GRCGYC	1 cut(s)	942
BstBAI	YACGTR	1 cut(s)	1288
BstC8I	GCNNGC	4 cut(s)	655, 704, 860, 1399
BstDEI	CTNAG	1 cut(s)	1407
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	3 cut(s)	683, 909, 970
BstFNI	CGCG	1 cut(s)	882
BstH2I	RGCGCY	2 cut(s)	945, 1035
BstHHI	GCGC	3 cut(s)	944, 1034, 1376
BstKTI	GATC	3 cut(s)	724, 1128, 1216
BstMAI	GTCTC	1 cut(s)	1069
BstMBI	GATC	3 cut(s)	721, 1125, 1213
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 768, 1373
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	5 cut(s)	107, 653, 657, 1064, 1318
BstSCI	CCNGG	5 cut(s)	31, 670, 727, 1017, 1293
BstSLI	GKGCMC	3 cut(s)	113, 137, 179
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	2 cut(s)	32, 1351
BstV2I	GAAGAC	1 cut(s)	1164
BtgI	CCRYGG	1 cut(s)	787
BtgZI	GCGATG	2 cut(s)	441, 889
BtsCI	GGATG	3 cut(s)	683, 909, 970
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	2 cut(s)	638, 741
Cac8I	GCNNGC	4 cut(s)	655, 704, 860, 1399
CfoI	GCGC	3 cut(s)	944, 1034, 1376
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	8 cut(s)	104, 153, 650, 654, 874, 891, 1061, 1315
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	1407
DinI	GGCGCC	1 cut(s)	943
DpnI	GATC	3 cut(s)	723, 1127, 1215
DpnII	GATC	3 cut(s)	721, 1125, 1213
Eam1104I	CTCTTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	938
Eco130I	CCWWGG	1 cut(s)	1134
Eco57I	CTGAAG	2 cut(s)	1173, 1335
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	1134
EcoT22I	ATGCAT	1 cut(s)	655
EgeI	GGCGCC	1 cut(s)	943
EheI	GGCGCC	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	1134
FaeI	CATG	8 cut(s)	107, 156, 653, 657, 877, 894, 1064, 1318
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	8 cut(s)	103, 152, 649, 653, 873, 890, 1060, 1314
Fnu4HI	GCNGC	2 cut(s)	21, 1365
FokI	GGATG	3 cut(s)	690, 896, 977
Fsp4HI	GCNGC	2 cut(s)	21, 1365
FspBI	CTAG	7 cut(s)	51, 660, 1035, 1164, 1383, 1398, 1458
GlaI	GCGC	3 cut(s)	943, 1033, 1375
GluI	GCNGC	2 cut(s)	21, 1365
HaeII	RGCGCY	2 cut(s)	945, 1035
HapII	CCGG	4 cut(s)	32, 729, 1018, 1294
HhaI	GCGC	3 cut(s)	944, 1034, 1376
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	8 cut(s)	107, 156, 653, 657, 877, 894, 1064, 1318
Hin6I	GCGC	3 cut(s)	942, 1032, 1374
HinP1I	GCGC	3 cut(s)	942, 1032, 1374
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	5 cut(s)	46, 824, 968, 1160, 1403
HpaII	CCGG	4 cut(s)	32, 729, 1018, 1294
Hpy166II	GTNNAC	4 cut(s)	135, 158, 976, 1171
Hpy188I	TCNGA	5 cut(s)	279, 823, 1048, 1269, 1408
Hpy188III	TCNNGA	5 cut(s)	125, 1164, 1211, 1300, 1353
Hpy8I	GTNNAC	4 cut(s)	135, 158, 976, 1171
Hpy99I	CGWCG	1 cut(s)	1001
HpyAV	CCTTC	8 cut(s)	207, 267, 579, 842, 1003, 1022, 1106, 1409
HpyCH4III	ACNGT	3 cut(s)	139, 1001, 1454
HpyCH4IV	ACGT	1 cut(s)	1287
HpyCH4V	TGCA	7 cut(s)	59, 103, 135, 612, 653, 702, 1488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 768, 1373
HpyF3I	CTNAG	1 cut(s)	1407
HpySE526I	ACGT	1 cut(s)	1287
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	8 cut(s)	107, 156, 653, 657, 877, 894, 1064, 1318
HspAI	GCGC	3 cut(s)	942, 1032, 1374
KasI	GGCGCC	1 cut(s)	941
Kzo9I	GATC	3 cut(s)	721, 1125, 1213
LmnI	GCTCC	3 cut(s)	668, 731, 1307
Lsp1109I	GCAGC	2 cut(s)	32, 1351
LweI	GCATC	1 cut(s)	1186
MaeI	CTAG	7 cut(s)	51, 660, 1035, 1164, 1383, 1398, 1458
MaeII	ACGT	1 cut(s)	1287
MaeIII	GTNAC	6 cut(s)	89, 694, 764, 1082, 1183, 1331
MalI	GATC	3 cut(s)	723, 1127, 1215
MboI	GATC	3 cut(s)	721, 1125, 1213
MboII	GAAGA	5 cut(s)	55, 925, 1166, 1169, 1222
MhlI	GDGCHC	3 cut(s)	113, 137, 179
MluCI	AATT	3 cut(s)	36, 94, 805
Mly113I	GGCGCC	1 cut(s)	942
MlyI	GAGTC	4 cut(s)	818, 962, 1154, 1397
MmeI	TCCRAC	7 cut(s)	302, 338, 398, 434, 470, 846, 852
Mph1103I	ATGCAT	1 cut(s)	655
MseI	TTAA	3 cut(s)	1224, 1251, 1389
MslI	CAYNNNNRTG	3 cut(s)	840, 1176, 1319
MspI	CCGG	4 cut(s)	32, 729, 1018, 1294
MspR9I	CCNGG	5 cut(s)	33, 672, 729, 1019, 1295
MvaI	CCWGG	1 cut(s)	672
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	3 cut(s)	364, 768, 1373
NarI	GGCGCC	1 cut(s)	942
NciI	CCSGG	4 cut(s)	33, 729, 1019, 1295
NdeII	GATC	3 cut(s)	721, 1125, 1213
NheI	GCTAGC	1 cut(s)	1397
NlaIII	CATG	8 cut(s)	107, 156, 653, 657, 877, 894, 1064, 1318
NlaIV	GGNNCC	2 cut(s)	943, 1309
NmuCI	GTSAC	5 cut(s)	694, 764, 1082, 1183, 1331
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	5 cut(s)	107, 653, 657, 1064, 1318
PaeI	GCATGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	1060
PfeI	GAWTC	1 cut(s)	46
PfoI	TCCNGGA	2 cut(s)	31, 1017
PkrI	GCNGC	2 cut(s)	22, 1366
PleI	GAGTC	4 cut(s)	818, 962, 1154, 1397
PluTI	GGCGCC	1 cut(s)	945
PpsI	GAGTC	4 cut(s)	818, 962, 1154, 1397
Ppu21I	YACGTR	1 cut(s)	1288
PscI	ACATGT	1 cut(s)	1060
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	943, 1309
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	3 cut(s)	840, 1176, 1319
SaqAI	TTAA	3 cut(s)	1224, 1251, 1389
SatI	GCNGC	2 cut(s)	21, 1365
Sau3AI	GATC	3 cut(s)	721, 1125, 1213
SchI	GAGTC	4 cut(s)	818, 962, 1154, 1397
ScrFI	CCNGG	5 cut(s)	33, 672, 729, 1019, 1295
SduI	GDGCHC	3 cut(s)	113, 137, 179
SfaNI	GCATC	1 cut(s)	1186
SfoI	GGCGCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	3 cut(s)	840, 1176, 1319
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	3 cut(s)	36, 94, 805
SsiI	CCGC	7 cut(s)	305, 365, 500, 554, 762, 979, 1367
SspDI	GGCGCC	1 cut(s)	941
SspI	AATATT	2 cut(s)	251, 335
SspMI	CTAG	7 cut(s)	51, 660, 1035, 1164, 1383, 1398, 1458
StyD4I	CCNGG	5 cut(s)	31, 670, 727, 1017, 1293
StyI	CCWWGG	1 cut(s)	1134
TaaI	ACNGT	3 cut(s)	139, 1001, 1454
TaiI	ACGT	1 cut(s)	1290
TaqI	TCGA	2 cut(s)	996, 1474
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	36, 94, 805
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	1224, 1251, 1389
Tru9I	TTAA	3 cut(s)	1224, 1251, 1389
TscAI	CASTG	2 cut(s)	638, 741
TseFI	GTSAC	5 cut(s)	694, 764, 1082, 1183, 1331
TseI	GCWGC	2 cut(s)	20, 1364
Tsp45I	GTSAC	5 cut(s)	694, 764, 1082, 1183, 1331
TspDTI	ATGAA	5 cut(s)	745, 841, 890, 925, 1428
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	2 cut(s)	638, 741
VneI	GTGCAC	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	1163
XceI	RCATGY	5 cut(s)	107, 653, 657, 1064, 1318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1096
XspI	CTAG	7 cut(s)	51, 660, 1035, 1164, 1383, 1398, 1458
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.