Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Forward (+)

9367139 .. 9369099

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCTCAAGCTGTGGTACGCTTAGGTGTGTTTTTGGTCATCCTCTTGATGCTTGTTGCGGCAGAGGCAGCAACTTCTCATCCAAAGCCTAAGAAAGTCAAGTGCCAAGACAAAAAGTTCTACAAGTGTTACCACAAAGACCTCTATTGCCCTGCATCATGCCCCCGCACTTGTGTTGTGGATTGTAAGAAATGCAAACCAGTTTGTAAGGCGCCACCGCCGCCGCCACCACCTCCACCGCCGCCACCAAGACATAGGCACCCTCCGCCGCCTCCAAAGAATTATCATCGTTCACCCCCTCCGCCTCCAAAGGCGTACCCCTCACCACCACCTCCACCTTCAGTTGTTCCTACTCCCCCTCCTTCCACTACCACTCCACCTCCACCCCCTACTTCTACTCCTTCATCTCCACCACCTCCTGCTTCCACGCCATCACCTCCACCACCCACTACTTCTACACCACCTTCCTCATATCCTCCACCTCCCCCTTCTTCAGAGACCTCTGGAGAGCAGAGAAAATGCAAGAACAAGAACTACCCTCATTGTTATGGCCTAGAGCATACATGTCCTAGTGCTTGCCCTGAGCAATGTGAAGTTGACTGCGTCACATGCAGTCCTGTTTGCAACTGCAACAGGCCAGGGGCTGTGTGTCAAGACCCCAGATTTATTGGTGGTGATGGAATAACCTTCTACTTCCACGGCAAGAAAGACCAAGACTTCTGCATAGTTTCTGATTCAAATCTCCACATCAACGCCCACTTCATTGGCAAGAGAAACCAAAACATGAAGAGGGACTTCACTTGGGTACAGTCTCTAGGGATCCTCTTTGGAAACCACAAACTCTTCATCGGTGCCAAAACCACGTCAATTTGGGATGACTCCAATGACCGTCTCTCCTTATCCATCGACGGCGAACCCATAAACCTCCTGGACAGCGAAGGTGCTAACTGGCAATCAATCTTATCACCAGGAGCACTCAGCATCACAAGGACGAAAAACACAAATTCGATAGAAATCGAAGCTGAAGGGAACTTCAAGATCAAAGCAGTGGTGGTGCCTATAACAGAAAAGGACTCCAAGATCCATAAATATGGGGTTACGCAAGAGGATTGCTTTGCTCATCTTGACTTGAGCTTCAAGTTTTATGCCCTAAGTGGGGAAGTGAATGGTGTTTTGGGCCAAACATATGCAAGCAACTACGTGAGTAGGGTTAAGATGGGTGTGGTGATGCCTGTTTTGGGTGGGGACAAAGAATTTGCATCCTCTAGTATCTTTGCCTCTGATTGTGCTGTTTCAAGGTTTAGTGGGGAATTTGTTAAGACCAACTCTTCAGAGAGCTTGGAGTATATGAATTGTGCTAGTGGGAAGGATGGCCGTGGAGTTGTTTGTAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

466

Amino Acids

50.45

Weight (kDa)

8.76

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	211, 258, 851, 1054
AclWI	GGATC	3 cut(s)	814, 827, 1075
AcoI	YGGCCR	1 cut(s)	1372
AcsI	RAATTY	3 cut(s)	1003, 1253, 1310
AcuI	CTGAAG	4 cut(s)	324, 477, 1044, 1314
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	3 cut(s)	18, 317, 807
AfiI	CCNNNNNNNGG	3 cut(s)	1155, 1156, 1238
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	738, 1036, 1138, 1296
AjiI	CACGTC	1 cut(s)	864
AjnI	CCWGG	3 cut(s)	637, 927, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	1157, 1189
AluBI	AGCT	4 cut(s)	11, 1022, 1134, 1338
AluI	AGCT	4 cut(s)	11, 1022, 1134, 1338
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	3 cut(s)	491, 816, 896
AlwI	GGATC	3 cut(s)	814, 827, 1075
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	4 cut(s)	550, 635, 1177, 1372
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	3 cut(s)	1003, 1253, 1310
ArsI	GACNNNNNNTTYG	2 cut(s)	1238, 1270
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	1177
AsuHPI	GGTGA	6 cut(s)	285, 315, 426, 686, 957, 1237
BamHI	GGATCC	1 cut(s)	819
BanI	GGYRCC	4 cut(s)	211, 258, 851, 1054
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	5 cut(s)	439, 671, 911, 1210, 1364
BceAI	ACGGC	3 cut(s)	715, 925, 1359
BciT130I	CCWGG	3 cut(s)	639, 929, 969
BcoDI	GTCTC	3 cut(s)	491, 816, 896
BfaI	CTAG	5 cut(s)	554, 570, 815, 1266, 1359
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	6 cut(s)	60, 69, 221, 224, 242, 269
BlsI	GCNGC	6 cut(s)	61, 70, 222, 225, 243, 270
Bme1390I	CCNGG	3 cut(s)	639, 929, 969
BmgBI	CACGTC	1 cut(s)	864
BmgT120I	GGNCC	1 cut(s)	1177
BmiI	GGNNCC	5 cut(s)	213, 260, 821, 853, 1056
BmrFI	CCNGG	3 cut(s)	639, 929, 969
BmsI	GCATC	5 cut(s)	39, 164, 990, 1218, 1268
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	22, 582
BpuEI	CTTGAG	1 cut(s)	1150
BsaAI	YACGTR	1 cut(s)	1201
BsaBI	GATNNNNATC	2 cut(s)	738, 1013
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	638, 697, 1375
Bsc4I	CCNNNNNNNGG	3 cut(s)	1155, 1156, 1238
Bse1I	ACTGG	2 cut(s)	200, 953
Bse3DI	GCAATG	1 cut(s)	593
Bse8I	GATNNNNATC	2 cut(s)	738, 1013
BseBI	CCWGG	3 cut(s)	639, 929, 969
BseDI	CCNNGG	3 cut(s)	638, 697, 1375
BseGI	GGATG	5 cut(s)	39, 79, 880, 1259, 1375
BseJI	GATNNNNATC	2 cut(s)	738, 1013
BseLI	CCNNNNNNNGG	3 cut(s)	1155, 1156, 1238
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	573, 991
BseNI	ACTGG	2 cut(s)	200, 953
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	4 cut(s)	552, 637, 1179, 1374
BshNI	GGYRCC	4 cut(s)	211, 258, 851, 1054
BsiHKAI	GWGCWC	1 cut(s)	976
BslFI	GGGAC	2 cut(s)	806, 1259
BslI	CCNNNNNNNGG	3 cut(s)	1155, 1156, 1238
BsmAI	GTCTC	3 cut(s)	491, 816, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	2 cut(s)	806, 1259
BsnI	GGCC	4 cut(s)	552, 637, 1179, 1374
Bso31I	GGTCTC	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	3 cut(s)	819, 1038, 1080
BspANI	GGCC	4 cut(s)	552, 637, 1179, 1374
BspCNI	CTCAG	2 cut(s)	574, 990
BspLI	GGNNCC	5 cut(s)	213, 260, 821, 853, 1056
BspPI	GGATC	3 cut(s)	814, 827, 1075
BspT107I	GGYRCC	4 cut(s)	211, 258, 851, 1054
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	200, 953
BssECI	CCNNGG	3 cut(s)	638, 697, 1375
BssMI	GATC	3 cut(s)	819, 1038, 1080
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	3 cut(s)	639, 929, 969
Bst4CI	ACNGT	2 cut(s)	810, 890
Bst6I	CTCTTC	3 cut(s)	782, 848, 1333
BstACI	GRCGYC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	1201
BstC8I	GCNNGC	2 cut(s)	577, 1192
BstDEI	CTNAG	5 cut(s)	22, 90, 582, 977, 1151
BstDSI	CCRYGG	2 cut(s)	697, 1375
BstF5I	GGATG	5 cut(s)	39, 79, 880, 1259, 1375
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	822, 1041, 1083
BstMAI	GTCTC	3 cut(s)	491, 816, 896
BstMBI	GATC	3 cut(s)	819, 1038, 1080
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 68, 220, 265, 609
BstNI	CCWGG	3 cut(s)	639, 929, 969
BstNSI	RCATGY	2 cut(s)	567, 612
BstSCI	CCNGG	3 cut(s)	637, 927, 967
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	819, 1080
BstXI	CCANNNNNNTGG	2 cut(s)	764, 1091
BstYI	RGATCY	2 cut(s)	819, 1080
BsuRI	GGCC	4 cut(s)	552, 637, 1179, 1374
BtgI	CCRYGG	2 cut(s)	697, 1375
BtrI	CACGTC	1 cut(s)	864
BtsCI	GGATG	5 cut(s)	39, 79, 880, 1259, 1375
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	1 cut(s)	1053
Cac8I	GCNNGC	2 cut(s)	577, 1192
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	1177
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	17, 316, 806
CviAII	CATG	4 cut(s)	159, 564, 609, 784
CviQI	GTAC	3 cut(s)	17, 316, 806
DdeI	CTNAG	5 cut(s)	22, 90, 582, 977, 1151
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	821, 1040, 1082
DpnII	GATC	3 cut(s)	819, 1038, 1080
EaeI	YGGCCR	1 cut(s)	1372
Eam1104I	CTCTTC	3 cut(s)	782, 848, 1333
EarI	CTCTTC	3 cut(s)	782, 848, 1333
EciI	GGCGGA	2 cut(s)	255, 291
Eco31I	GGTCTC	1 cut(s)	491
Eco57I	CTGAAG	4 cut(s)	324, 477, 1044, 1314
EcoRII	CCWGG	3 cut(s)	637, 927, 967
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	4 cut(s)	162, 567, 612, 787
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	2 cut(s)	806, 1259
FatI	CATG	4 cut(s)	158, 563, 608, 783
FauI	CCCGC	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	1186
Fnu4HI	GCNGC	6 cut(s)	60, 69, 221, 224, 242, 269
FokI	GGATG	5 cut(s)	26, 66, 887, 1246, 1382
Fsp4HI	GCNGC	6 cut(s)	60, 69, 221, 224, 242, 269
FspBI	CTAG	5 cut(s)	554, 570, 815, 1266, 1359
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	6 cut(s)	60, 69, 221, 224, 242, 269
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	552, 637, 1179, 1374
HgaI	GACGC	1 cut(s)	592
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	162, 567, 612, 787
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	734, 878, 1073
HphI	GGTGA	6 cut(s)	285, 315, 426, 686, 957, 1237
Hpy166II	GTNNAC	2 cut(s)	293, 598
Hpy188I	TCNGA	4 cut(s)	496, 733, 1282, 1333
Hpy188III	TCNNGA	5 cut(s)	46, 504, 653, 1036, 1124
Hpy8I	GTNNAC	2 cut(s)	293, 598
Hpy99I	CGWCG	1 cut(s)	911
HpyAV	CCTTC	9 cut(s)	348, 372, 411, 474, 498, 697, 932, 1019, 1360
HpyCH4III	ACNGT	2 cut(s)	810, 890
HpyCH4IV	ACGT	2 cut(s)	863, 1200
HpyCH4V	TGCA	9 cut(s)	155, 195, 522, 612, 624, 630, 723, 1190, 1259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 68, 220, 265, 609
HpyF3I	CTNAG	5 cut(s)	22, 90, 582, 977, 1151
HpySE526I	ACGT	2 cut(s)	863, 1200
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	162, 567, 612, 787
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	819, 1038, 1080
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	5 cut(s)	39, 164, 990, 1218, 1268
MaeI	CTAG	5 cut(s)	554, 570, 815, 1266, 1359
MaeII	ACGT	2 cut(s)	863, 1200
MaeIII	GTNAC	3 cut(s)	128, 604, 1096
MalI	GATC	3 cut(s)	821, 1040, 1082
MboI	GATC	3 cut(s)	819, 1038, 1080
MboII	GAAGA	4 cut(s)	483, 799, 835, 1320
MflI	RGATCY	2 cut(s)	819, 1080
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	6 cut(s)	280, 867, 1003, 1253, 1310, 1351
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	872, 1067
MseI	TTAA	2 cut(s)	1212, 1317
MslI	CAYNNNNRTG	2 cut(s)	546, 1089
MspR9I	CCNGG	3 cut(s)	639, 929, 969
MvaI	CCWGG	3 cut(s)	639, 929, 969
MwoI	GCNNNNNNNGC	5 cut(s)	65, 68, 220, 265, 609
NarI	GGCGCC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	1186
NdeII	GATC	3 cut(s)	819, 1038, 1080
NlaIII	CATG	4 cut(s)	162, 567, 612, 787
NlaIV	GGNNCC	5 cut(s)	213, 260, 821, 853, 1056
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	2 cut(s)	567, 612
PciI	ACATGT	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	734
PflFI	GACNNNGTC	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	927
PkrI	GCNGC	6 cut(s)	61, 70, 222, 225, 243, 270
PleI	GAGTC	2 cut(s)	872, 1067
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	2 cut(s)	872, 1067
Ppu21I	YACGTR	1 cut(s)	1201
PscI	ACATGT	1 cut(s)	563
Psp6I	CCWGG	3 cut(s)	637, 927, 967
PspGI	CCWGG	3 cut(s)	637, 927, 967
PspN4I	GGNNCC	5 cut(s)	213, 260, 821, 853, 1056
PspPI	GGNCC	1 cut(s)	1177
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	819, 1080
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	3 cut(s)	18, 317, 807
RsaNI	GTAC	3 cut(s)	17, 316, 806
RseI	CAYNNNNRTG	2 cut(s)	546, 1089
SaqAI	TTAA	2 cut(s)	1212, 1317
SatI	GCNGC	6 cut(s)	60, 69, 221, 224, 242, 269
Sau3AI	GATC	3 cut(s)	819, 1038, 1080
Sau96I	GGNCC	1 cut(s)	1177
SchI	GAGTC	2 cut(s)	872, 1067
ScrFI	CCNGG	3 cut(s)	639, 929, 969
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	5 cut(s)	39, 164, 990, 1218, 1268
SfoI	GGCGCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	546, 1089
SmlI	CTYRAG	2 cut(s)	6, 1129
SmoI	CTYRAG	2 cut(s)	6, 1129
Sse9I	AATT	6 cut(s)	280, 867, 1003, 1253, 1310, 1351
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	5 cut(s)	554, 570, 815, 1266, 1359
StyD4I	CCNGG	3 cut(s)	637, 927, 967
TaaI	ACNGT	2 cut(s)	810, 890
TaiI	ACGT	2 cut(s)	866, 1203
TaqI	TCGA	3 cut(s)	906, 1007, 1017
TasI	AATT	6 cut(s)	280, 867, 1003, 1253, 1310, 1351
TauI	GCSGC	5 cut(s)	62, 223, 226, 244, 271
TfiI	GAWTC	1 cut(s)	734
Tru1I	TTAA	2 cut(s)	1212, 1317
Tru9I	TTAA	2 cut(s)	1212, 1317
TscAI	CASTG	1 cut(s)	1053
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	5 cut(s)	393, 751, 800, 835, 1364
TspRI	CASTG	1 cut(s)	1053
Tth111I	GACNNNGTC	1 cut(s)	602
XapI	RAATTY	3 cut(s)	1003, 1253, 1310
XceI	RCATGY	2 cut(s)	567, 612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	925
XspI	CTAG	5 cut(s)	554, 570, 815, 1266, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.