Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002618

Physical Location & Seq

Genomic Coordinates Forward (+)

33225478 .. 33230938

Gene Structure 5461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0289600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGCAGGAAGAAGTGGAAGCAGGAAGCCTTACTTGGTCGTTATTGTGATACAAACAATATATGCAGGCATGTTCTTGCTCTCCAAGGCTGCATTGAATGGTGGCATGAACACTTATGTGTTTGTGTTTTATAGACAGGCTGCTGCAACTCTCTTTTTAGTTCCTCTTGCTCTTTTTCTCGAATGGAAAACGGCGCCACCGCTGTCTTTCATGACCTTCTGCAAGATTTTTCTGCTTTCATTTTTCGGGATTACTGTAAGCTTGGACTTCTGTGGCGTTGGCCTTCTTTATACCTCGGCGACTTTGTCTGCTGCAATCAGAAACAGCCTTCCTGTCATTACTTTTCTCTTGGCACTTCTACTCAGGATGGAAGTATTGAAGCTAAGGACAACCTCAGGTGTGGCTAAGCTTGCAGGCATATTATTTTGCACGGCAGGGGTGGTGACCCTGGCCGTATACAAAGGCCCCCGTTTGAATCTCCTGGGGCATCATAATCTCTTTCATCACCATAACATCCAAGAACATGAAGGCCATGTTCCATCTGGAAAAACATGGATAAAGGGTTGCTTCCTCGTGCTGATGTGCCACATCTTTTGGGGCTTGTGGCTTGTGTTGCAGGCAGGAGTTATGAAAAGCTACCCTTCAATGCTTCTCTTCACAACTCTACAATGCTTTCTAAGTTCAATCCAGACGTTTGTCATTGCCATCGCTGTTGAGAGAAACCCCTATCAATGGAAGCTCGGATGGAATCTCAAACTTGTGGCAGTAGCTTACAGCGGAATTGTTGTTACCGGCATTACTTTCCATTTACAAGCGTGGGTAATCGAGAAGAAGGATCCAGTTTTCTTGGCTATGTCGACACCATTGGCTTCTATCATCACACTCTTTGCTTCTGCAATTCTCTTGGGAGAAATCATTAGTCTGGGAAGTATCTTAGGTGGGCTCTTATTGGTTGGAGGGCTTTATAGTGTTTTATGGGCGAAGAGCAGAGAGCAAAGTATAGTTGATGAGAGTTGCTTAAGAGCTGAAGCAAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

347

Amino Acids

38.14

Weight (kDa)

9.47

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 136	1.3e-08	EamA-like transporter family
EamA	PF00892	188 - 326	2.6e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19430 AT3G19430
fragaria_vesca	FvH4_2g05430 FvH4_3g29630 FvH4_5g10780
malus_domestica	MD05G1087500.v1.1 MD11G1162000.v1.1
prunus_persica	Prupe.4G282900_v2.0.a1 Prupe.6G124900_v2.0.a1 Prupe.6G125100_v2.0.a1 Prupe.6G125200_v2.0.a1 Prupe.6G125400_v2.0.a1 Prupe.8G132700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0054971 RchiOBHm_Chr6g0255721
rosa_laevigata	RLG00000014819 RLG00000034951
rosa_multiflora	Rmu_sc0003653.1_g000016 Rmu_sc0003653.1_g000019 Rmu_sc0004354.1_g000011 Rmu_sc0007003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025530 Rroxscaffold_1G00025550 Rroxscaffold_1G00025610 Rroxscaffold_7G00209740
rosa_rugosa	Rorug05G0289500.1 Rorug05G0289600 Rorug05G0560700
rosa_samantha	Rh5AG359400 Rh5AG359700 Rh5BG370700 Rh5CG393000 Rh5DG384200 Rh5DG384300 Rh5DG384500 Rh6AG078800 Rh6BG071900 Rh6CG070000 Rh6DG067200
rosa_wichuraiana	Rw6G006790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	2 cut(s)	459, 860
AciI	CCGC	2 cut(s)	203, 780
AclWI	GGATC	2 cut(s)	833, 846
AcoI	YGGCCR	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflII	CTTAAG	1 cut(s)	1021
AgsI	TTSAA	5 cut(s)	100, 382, 478, 648, 687
AjnI	CCWGG	2 cut(s)	450, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	7 cut(s)	264, 385, 412, 639, 742, 773, 1028
AluI	AGCT	7 cut(s)	264, 385, 412, 639, 742, 773, 1028
AlwI	GGATC	2 cut(s)	833, 846
AoxI	GGCC	4 cut(s)	283, 453, 466, 532
ApeKI	GCWGC	4 cut(s)	92, 143, 146, 314
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	457, 500
AxyI	CCTNAGG	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	948
BauI	CACGAG	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	79, 130, 133, 301
BccI	CCATC	4 cut(s)	364, 550, 716, 741
BceAI	ACGGC	3 cut(s)	210, 440, 450
BciT130I	CCWGG	2 cut(s)	452, 485
BfoI	RGCGCY	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	1021
BisI	GCNGC	4 cut(s)	93, 144, 147, 315
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	4 cut(s)	94, 145, 148, 316
Bme1390I	CCNGG	2 cut(s)	452, 485
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	3 cut(s)	198, 469, 840
BmrFI	CCNGG	2 cut(s)	452, 485
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	87, 297, 450, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	842
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	452, 485
BseDI	CCNNGG	4 cut(s)	87, 297, 450, 484
BseGI	GGATG	3 cut(s)	375, 516, 752
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	379, 411
BseNI	ACTGG	1 cut(s)	842
BseXI	GCAGC	4 cut(s)	79, 130, 133, 301
BshFI	GGCC	4 cut(s)	285, 455, 468, 534
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	795
BslI	CCNNNNNNNGG	1 cut(s)	735
BsnI	GGCC	4 cut(s)	285, 455, 468, 534
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp143I	GATC	1 cut(s)	838
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	203, 780
BspANI	GGCC	4 cut(s)	285, 455, 468, 534
BspCNI	CTCAG	2 cut(s)	378, 410
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	198, 469, 840
BspPI	GGATC	2 cut(s)	833, 846
BspQI	GCTCTTC	1 cut(s)	980
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	4 cut(s)	87, 297, 450, 484
BssMI	GATC	1 cut(s)	838
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	2 cut(s)	452, 485
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	662, 980
BstACI	GRCGYC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	1021
BstC8I	GCNNGC	4 cut(s)	70, 414, 418, 621
BstDEI	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	3 cut(s)	375, 516, 752
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	841
BstMBI	GATC	1 cut(s)	838
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 616
BstNI	CCWGG	2 cut(s)	452, 485
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	698
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	450, 483
BstV1I	GCAGC	4 cut(s)	79, 130, 133, 301
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	285, 455, 468, 534
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	375, 516, 752
Cac8I	GCNNGC	4 cut(s)	70, 414, 418, 621
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	6 cut(s)	73, 109, 214, 527, 536, 555
DdeI	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	1 cut(s)	840
DpnII	GATC	1 cut(s)	838
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	662, 980
EarI	CTCTTC	2 cut(s)	662, 980
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	948
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	450, 483
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	948
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 554, 586, 628, 660
FatI	CATG	6 cut(s)	72, 108, 213, 526, 535, 554
FblI	GTMKAC	2 cut(s)	459, 860
Fnu4HI	GCNGC	4 cut(s)	93, 144, 147, 315
FokI	GGATG	3 cut(s)	382, 503, 759
FriOI	GRGCYC	1 cut(s)	948
Fsp4HI	GCNGC	4 cut(s)	93, 144, 147, 315
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	93, 144, 147, 315
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	285, 455, 468, 534
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HindIII	AAGCTT	2 cut(s)	262, 410
HinfI	GANTC	2 cut(s)	478, 751
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	2 cut(s)	457, 500
Hpy166II	GTNNAC	2 cut(s)	460, 861
Hpy188I	TCNGA	2 cut(s)	323, 746
Hpy188III	TCNNGA	7 cut(s)	182, 214, 250, 367, 546, 691, 829
Hpy8I	GTNNAC	2 cut(s)	460, 861
HpyAV	CCTTC	6 cut(s)	229, 296, 341, 524, 654, 829
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	9 cut(s)	68, 95, 149, 225, 317, 416, 432, 619, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 616
HpyF3I	CTNAG	6 cut(s)	365, 386, 397, 408, 680, 937
HpySE526I	ACGT	1 cut(s)	695
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	838
LguI	GCTCTTC	1 cut(s)	980
Lsp1109I	GCAGC	4 cut(s)	79, 130, 133, 301
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	2 cut(s)	445, 790
MalI	GATC	1 cut(s)	840
MboI	GATC	1 cut(s)	838
MboII	GAAGA	4 cut(s)	24, 649, 844, 997
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	2 cut(s)	783, 900
Mly113I	GGCGCC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	937
MnlI	CCTC	5 cut(s)	177, 307, 406, 584, 953
MseI	TTAA	1 cut(s)	1022
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	205, 780
MspCI	CTTAAG	1 cut(s)	1021
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	2 cut(s)	452, 485
MvaI	CCWGG	2 cut(s)	452, 485
MwoI	GCNNNNNNNGC	2 cut(s)	413, 616
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	1 cut(s)	838
NlaIII	CATG	6 cut(s)	76, 112, 217, 530, 539, 558
NlaIV	GGNNCC	3 cut(s)	198, 469, 840
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	980
PfeI	GAWTC	2 cut(s)	478, 751
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	94, 145, 148, 316
PluTI	GGCGCC	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	450, 483
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	2 cut(s)	450, 483
PspN4I	GGNNCC	3 cut(s)	198, 469, 840
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	859
SapI	GCTCTTC	1 cut(s)	980
SaqAI	TTAA	1 cut(s)	1022
SatI	GCNGC	4 cut(s)	93, 144, 147, 315
Sau3AI	GATC	1 cut(s)	838
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	452, 485
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	1021
SmoI	CTYRAG	1 cut(s)	1021
Sse9I	AATT	2 cut(s)	783, 900
SsiI	CCGC	2 cut(s)	203, 780
SspDI	GGCGCC	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	450, 483
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	3 cut(s)	183, 828, 860
TasI	AATT	2 cut(s)	783, 900
TfiI	GAWTC	2 cut(s)	478, 751
Tru1I	TTAA	1 cut(s)	1022
Tru9I	TTAA	1 cut(s)	1022
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	92, 143, 146, 314
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	125, 202, 231, 494, 543, 647
Tth111I	GACNNNGTC	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	2 cut(s)	459, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.