Rw6G006790

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002618
Physical Location & Seq
Forward (+)
10859247 .. 10860922
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006790.1

Sequence Viewer

Length: 1296 bp
ATGTGTGCCCCAAGTTTTGTCCCGATAAGTGCACGGTTGAGTGTGTGTCATGTAAACCCATCTGTTCTGGGGGCACAACATCTCCCACTACACCTTCACCAACACCTACACCTACCGCACCAACTCCTACTCCATCACCTCCCAAATATTACTCTCCTCCCCCCTAAAACTCCGACACCACCAACCCCAACCCCAACACCGCCAACTCCAACTCCATCACCTCCCAAATATTACCCTCCTCCTCCTAAAACGCCCACACCGCCTACTCCAACCCCAACACCGCCAACTCCAACTCCCACACCACCAACCCCGACCCCAACACCTCCAACTCCAACTCCCACACCGCCAACCCCTACTCCCTCTCCCCCAACCCCTACTCCCTCACCGCCAACCCCTACTTCTTCACCTCCATCAACTCCCACTCCACCAAAGAAAGGAAAGTGCAAGAACAAGAACTACCCCCAGTGCTACAACATTGAACATGTGGATTGTGTCACTTGTAAGCCAGTCTGTAAGTGTGATCAACCCGGAGCAGTGTGCCAAGACCCTCGTTTCATAGGCGGTGACGGCATTACCTTTGACTTCCACGGCAAGAAAAACCACAATTTCTGCCTCTTATCGGACTCCAACCTTCACATCAATGCCCACTTCATCGGCAAGCGAAATGCCAACATGAAACGCGACTTCACATGGGTCCAATCCATTGCCATCCTCTTTGGAAAACACCAACTCTTCATCGGCGCCCAAAAAACTGCAACATGGGATGACCCCGTTGACCGCCTTGCCCTCTCCTTCGACGGCGAGCCAATCACCCTCCGGGAATCCGAAGGCGCTAGGTGGCAATCCGAGAGCTTCCCACATGTCTCATTCGCAAGGGTGGGTGACACCAACAATGTGATGGTTGAAGTTGAAGGCAAGTTTAGGATCACAGCCAAGGTTGTGCCTATAACTGAAGAAGACTCTAGAGTTCACAACTATGGTGTGACAAAAGATGATGCGTTGGCTCATCTTGATCTTGGGTTTAAGTTCTTCTCTTTGAGCAACCGAGTTAATGGTGTGTTGGGTCAGACTTACAGACCCGATTACGTGAGCCGGGTCAAGATTGGAGCCAACATGCCTGTGATGGGTGGTGACAGGGAGTTCCAAACTTCAGGACTTTTCGCTGCGGATTGCGCCATTGCTAGGTTTAATGGTGCTAGCGACTCTGAGAATGAAGGGTCTGTTGAGGGTTTGGAGTTTCCAAGCTTGAACTGTGCTAGTGGGATTGATGGTCGAGGAGTAGTGTGCAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

431

Amino Acids

46.77

Weight (kDa)

8.37

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 340 - 396 4.6e-30 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 740
AccII CGCG 1 cut(s) 681
AciI CCGC 9 cut(s) 116, 200, 260, 281, 344, 386, 561, 778, 1166
AclWI GGATC 1 cut(s) 932
AcuI CTGAAG 2 cut(s) 972, 1134
AcyI GRCGYC 1 cut(s) 741
AfiI CCNNNNNNNGG 4 cut(s) 434, 619, 1124, 1182
AflIII ACRYGT 2 cut(s) 481, 859
AgsI TTSAA 4 cut(s) 479, 905, 911, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 2 cut(s) 852, 1245
AluI AGCT 2 cut(s) 852, 1245
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 868
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 1 cut(s) 932
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 1163
AspLEI GCGC 3 cut(s) 743, 833, 1175
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 3 cut(s) 528, 818, 1094
AsuHPI GGTGA 9 cut(s) 89, 128, 210, 375, 396, 575, 802, 893, 1142
AsuNHI GCTAGC 1 cut(s) 1196
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 3 cut(s) 10, 34, 76
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 1150
BccI CCATC 8 cut(s) 67, 141, 223, 418, 716, 892, 1117, 1262
BceAI ACGGC 3 cut(s) 583, 604, 814
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 3 cut(s) 528, 818, 1094
BcoDI GTCTC 1 cut(s) 868
BfaI CTAG 5 cut(s) 834, 963, 1182, 1197, 1257
BfoI RGCGCY 2 cut(s) 744, 834
BisI GCNGC 1 cut(s) 1164
BlsI GCNGC 1 cut(s) 1165
Bme1390I CCNGG 3 cut(s) 528, 818, 1094
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 3 cut(s) 695, 742, 1108
BmrFI CCNGG 3 cut(s) 528, 818, 1094
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 1 cut(s) 985
BmtI GCTAGC 1 cut(s) 1200
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 963
BpuMI CCSGG 3 cut(s) 528, 818, 1094
BsaAI YACGTR 1 cut(s) 1087
BsaHI GRCGYC 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 586, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 434, 619, 1124, 1182
Bse1I ACTGG 2 cut(s) 463, 506
Bse3DI GCAATG 2 cut(s) 702, 1176
BseDI CCNNGG 2 cut(s) 586, 933
BseGI GGATG 2 cut(s) 708, 769
BseLI CCNNNNNNNGG 4 cut(s) 434, 619, 1124, 1182
BseMI GCAATG 2 cut(s) 702, 1176
BseMII CTCAG 1 cut(s) 1197
BseNI ACTGG 2 cut(s) 463, 506
BseRI GAGGAG 4 cut(s) 146, 228, 231, 1290
BseSI GKGCMC 3 cut(s) 10, 34, 76
BseXI GCAGC 1 cut(s) 1150
Bsh1236I CGCG 1 cut(s) 681
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 3 cut(s) 528, 817, 1093
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 4 cut(s) 434, 619, 1124, 1182
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 10, 34, 76
Bsp143I GATC 3 cut(s) 520, 924, 1012
BspACI CCGC 9 cut(s) 116, 200, 260, 281, 344, 386, 561, 778, 1166
BspCNI CTCAG 1 cut(s) 1198
BspFNI CGCG 1 cut(s) 681
BspLI GGNNCC 3 cut(s) 695, 742, 1108
BspOI GCTAGC 1 cut(s) 1200
BspPI GGATC 1 cut(s) 932
BspT107I GGYRCC 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 702, 1176
BsrI ACTGG 2 cut(s) 463, 506
BssECI CCNNGG 2 cut(s) 586, 933
BssMI GATC 3 cut(s) 520, 924, 1012
BssNI GRCGYC 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 933
Bst4CI ACNGT 2 cut(s) 36, 1253
Bst6I CTCTTC 1 cut(s) 737
BstACI GRCGYC 1 cut(s) 741
BstBAI YACGTR 1 cut(s) 1087
BstC8I GCNNGC 3 cut(s) 659, 803, 1198
BstDEI CTNAG 1 cut(s) 1206
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 2 cut(s) 708, 769
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 2 cut(s) 744, 834
BstHHI GCGC 3 cut(s) 743, 833, 1175
BstKTI GATC 3 cut(s) 523, 927, 1015
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 3 cut(s) 520, 924, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 259, 567, 1172
BstNSI RCATGY 3 cut(s) 485, 863, 1117
BstSCI CCNGG 3 cut(s) 526, 816, 1092
BstSLI GKGCMC 3 cut(s) 10, 34, 76
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 1 cut(s) 1150
BstV2I GAAGAC 1 cut(s) 963
BtgI CCRYGG 1 cut(s) 586
BtsCI GGATG 2 cut(s) 708, 769
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 2 cut(s) 470, 540
Cac8I GCNNGC 3 cut(s) 659, 803, 1198
CfoI GCGC 3 cut(s) 743, 833, 1175
Cfr13I GGNCC 1 cut(s) 694
CviAII CATG 7 cut(s) 50, 482, 673, 690, 759, 860, 1114
CviJI RGCY 8 cut(s) 505, 805, 852, 932, 1004, 1092, 1109, 1245
CviKI_1 RGCY 8 cut(s) 505, 805, 852, 932, 1004, 1092, 1109, 1245
DdeI CTNAG 1 cut(s) 1206
DinI GGCGCC 1 cut(s) 742
DpnI GATC 3 cut(s) 522, 926, 1014
DpnII GATC 3 cut(s) 520, 924, 1012
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 933
Eco47I GGWCC 1 cut(s) 694
Eco57I CTGAAG 2 cut(s) 972, 1134
EcoT14I CCWWGG 1 cut(s) 933
EgeI GGCGCC 1 cut(s) 742
EheI GGCGCC 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 933
FaeI CATG 7 cut(s) 53, 485, 676, 693, 762, 863, 1117
FaqI GGGAC 1 cut(s) 5
FatI CATG 7 cut(s) 49, 481, 672, 689, 758, 859, 1113
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 1164
FokI GGATG 2 cut(s) 695, 776
Fsp4HI GCNGC 1 cut(s) 1164
FspBI CTAG 5 cut(s) 834, 963, 1182, 1197, 1257
GlaI GCGC 3 cut(s) 742, 832, 1174
GluI GCNGC 1 cut(s) 1164
HaeII RGCGCY 2 cut(s) 744, 834
HapII CCGG 3 cut(s) 528, 817, 1093
HhaI GCGC 3 cut(s) 743, 833, 1175
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 7 cut(s) 53, 485, 676, 693, 762, 863, 1117
Hin6I GCGC 3 cut(s) 741, 831, 1173
HinP1I GCGC 3 cut(s) 741, 831, 1173
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 1243
HinfI GANTC 4 cut(s) 623, 821, 959, 1202
HpaII CCGG 3 cut(s) 528, 817, 1093
HphI GGTGA 9 cut(s) 89, 128, 210, 375, 396, 575, 802, 893, 1142
Hpy166II GTNNAC 4 cut(s) 32, 55, 775, 970
Hpy188I TCNGA 6 cut(s) 174, 622, 826, 847, 1068, 1207
Hpy188III TCNNGA 5 cut(s) 22, 963, 1010, 1099, 1152
Hpy8I GTNNAC 4 cut(s) 32, 55, 775, 970
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 6 cut(s) 104, 641, 802, 821, 905, 1208
HpyCH4III ACNGT 2 cut(s) 36, 1253
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 4 cut(s) 32, 444, 755, 1287
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 567, 1172
HpyF3I CTNAG 1 cut(s) 1206
HpySE526I ACGT 1 cut(s) 1086
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 7 cut(s) 53, 485, 676, 693, 762, 863, 1117
HspAI GCGC 3 cut(s) 741, 831, 1173
KasI GGCGCC 1 cut(s) 740
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 520, 924, 1012
LmnI GCTCC 2 cut(s) 530, 1106
LpnPI CCDG 9 cut(s) 53, 476, 519, 541, 830, 1106, 1120, 1131, 1137
Lsp1109I GCAGC 1 cut(s) 1150
LweI GCATC 1 cut(s) 985
MaeI CTAG 5 cut(s) 834, 963, 1182, 1197, 1257
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 5 cut(s) 493, 563, 881, 982, 1130
MalI GATC 3 cut(s) 522, 926, 1014
MboI GATC 3 cut(s) 520, 924, 1012
MboII GAAGA 5 cut(s) 393, 724, 965, 968, 1021
MhlI GDGCHC 3 cut(s) 10, 34, 76
MluCI AATT 1 cut(s) 604
Mly113I GGCGCC 1 cut(s) 741
MlyI GAGTC 3 cut(s) 617, 953, 1196
MmeI TCCRAC 7 cut(s) 197, 233, 293, 314, 350, 356, 651
MseI TTAA 3 cut(s) 1023, 1050, 1188
MslI CAYNNNNRTG 3 cut(s) 639, 975, 1118
MspI CCGG 3 cut(s) 528, 817, 1093
MspR9I CCNGG 3 cut(s) 528, 818, 1094
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 3 cut(s) 259, 567, 1172
NarI GGCGCC 1 cut(s) 741
NciI CCSGG 3 cut(s) 528, 818, 1094
NdeII GATC 3 cut(s) 520, 924, 1012
NheI GCTAGC 1 cut(s) 1196
NlaIII CATG 7 cut(s) 53, 485, 676, 693, 762, 863, 1117
NlaIV GGNNCC 3 cut(s) 695, 742, 1108
NmuCI GTSAC 5 cut(s) 493, 563, 881, 982, 1130
NspI RCATGY 3 cut(s) 485, 863, 1117
PciI ACATGT 2 cut(s) 481, 859
PfeI GAWTC 1 cut(s) 821
PfoI TCCNGGA 1 cut(s) 816
PkrI GCNGC 1 cut(s) 1165
PleI GAGTC 3 cut(s) 617, 953, 1196
PluTI GGCGCC 1 cut(s) 744
PpsI GAGTC 3 cut(s) 617, 953, 1196
Ppu21I YACGTR 1 cut(s) 1087
PscI ACATGT 2 cut(s) 481, 859
PspN4I GGNNCC 3 cut(s) 695, 742, 1108
PspPI GGNCC 1 cut(s) 694
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
RseI CAYNNNNRTG 3 cut(s) 639, 975, 1118
SaqAI TTAA 3 cut(s) 1023, 1050, 1188
SatI GCNGC 1 cut(s) 1164
Sau3AI GATC 3 cut(s) 520, 924, 1012
Sau96I GGNCC 1 cut(s) 694
SchI GAGTC 3 cut(s) 617, 953, 1196
ScrFI CCNGG 3 cut(s) 528, 818, 1094
SduI GDGCHC 3 cut(s) 10, 34, 76
SfaNI GCATC 1 cut(s) 985
SfoI GGCGCC 1 cut(s) 742
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 3 cut(s) 639, 975, 1118
Sse9I AATT 1 cut(s) 604
SsiI CCGC 9 cut(s) 116, 200, 260, 281, 344, 386, 561, 778, 1166
SspDI GGCGCC 1 cut(s) 740
SspI AATATT 2 cut(s) 148, 230
SspMI CTAG 5 cut(s) 834, 963, 1182, 1197, 1257
StyD4I CCNGG 3 cut(s) 526, 816, 1092
StyI CCWWGG 1 cut(s) 933
TaaI ACNGT 2 cut(s) 36, 1253
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 2 cut(s) 795, 1273
TasI AATT 1 cut(s) 604
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 3 cut(s) 1023, 1050, 1188
Tru9I TTAA 3 cut(s) 1023, 1050, 1188
TscAI CASTG 2 cut(s) 470, 540
TseFI GTSAC 5 cut(s) 493, 563, 881, 982, 1130
TseI GCWGC 1 cut(s) 1163
Tsp45I GTSAC 5 cut(s) 493, 563, 881, 982, 1130
TspDTI ATGAA 5 cut(s) 544, 640, 689, 724, 1227
TspRI CASTG 2 cut(s) 470, 540
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 694
XbaI TCTAGA 1 cut(s) 962
XceI RCATGY 3 cut(s) 485, 863, 1117
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XspI CTAG 5 cut(s) 834, 963, 1182, 1197, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.