RLG00000034951

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002618
Physical Location & Seq
Forward (+)
57537731 .. 57539619
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034951

Sequence Viewer

Length: 1485 bp
ATGGCTCATAAAGCTATGGCACGCCTGGGTGCGGTTTTGGTCCTTCTGTTGATTGCTTTTGTTGTAGCTGAGGGATCTCCTAAACCAAAGGCTAAGAAAGTCAAGTGCCAAGACAAGAAGTTCTACAAGTGTTACCATAAAGATCTCTACTGCCCAGCAGCATGCCTCCGCACTTGTGTTGTGGATTGTAAGAAATGCAAAGCTGTTTGTAAGGCGCCGCCTCCCCCGCCACCACCTCCACCGCCGCCGCCACCCAGACGTAAGTGGCGCTACCCACCCCCTCCTCCCCCAAAGAGTTATCACCGCTCACCGCCTCCTCCTCCCAAGACTTATCCATCACCACCACCTGCCCCTTCACTTGTTCCTACTCCCCCTCCTCCAGCTACAACTCCACCTCCGTCACCCCCTATCTCTACCCCGTCGTCACAACCGATGCCTCCTGCTACTACCCCATCACCACCGCCATCCCCTATTCCTACTCCATCACCACCTTTGTCCACACCATCATCACCGCCACCCCCTACTCCTACTCCATCACCACCGCTGCCCCCTACTTCTACACCACCTTCTTTCTATCCTCCACCACCGCCTTCATCAGAGGCCGCGGGTGAAAAGAGAGTCAAATGCAAGAACAAGAACTACCCTCATTGCTATGGTCTGGAGCTAAGTTGTCCTAGTGGGTGCCCTGAGCAATGTGAAGTTGACTGCGTCACATGCAGTCCCGTTTGTAACTGCAACAAACCAGGTGCTGTTTGCCAAGACCCTAGATTTATTGGTGGTGATGGTATAACCTTCTACTTCCATGGCAAGCGAGACCAAGACTTCTGTCTCGTATCTGATTCCAACATCCACATCAACGCCCATTTCATCGGAAAAAGAGACCAAAATATGAAGAGGGACTTCACTTGGGTCCAATCTCTAGGTATTCTCTTTGACAATCGCAAGCTCTTCATAGGTGCCAAACCAACCTCCACTTGGGATGACACCGTCGACCGCCTAACCCTAGCCATTGACGACGAAACCATTAGCCTTGCCGACAACGAAGGCACATATTGGCAATCGCAAGGACTCAAGATCACAAGGAGCAAGAACACAAATGCTGTAGAAATTGAAGCCGATGGGAACTTCAAGATCAAAGCAGTGGTGGTGCCGATAACGGAGAAAGAGTCGGTGATACACAAGTATGGGATTACACAGGAGGATTGCTTTGCTCACCTTGACTTGAGCTTCAAGTTTTATGCCCTAAGTGGGGAAGTTAATGGCGTGCTAGGACAGACATACGGTGAGAACTATGTTAGTAGGGTCAAGATGGGTGTCATGATGCCTGTTTTGGGTGGCGATAGAGAATTTTCATCGTCTAGCATCTTTGCCTCGGATTGTGCTGTTGCTAGGTTTAGCGGTGAGTCCAGCGAAAAGTCCAAGTATGCTAGTACTATGAATTGTGCTAGTGGGATGGATGGCCTTGGAGTCGTTTGTAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

495

Amino Acids

53.48

Weight (kDa)

8.85

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 409 - 465 3e-27 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 4 cut(s) 214, 681, 956, 1147
AccBSI CCGCTC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 990
AccII CGCG 1 cut(s) 605
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 1346
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 1432
AfiI CCNNNNNNNGG 5 cut(s) 31, 975, 1248, 1249, 1331
AgsI TTSAA 3 cut(s) 1112, 1129, 1231
AjnI CCWGG 2 cut(s) 24, 742
AluBI AGCT 7 cut(s) 14, 68, 203, 383, 664, 946, 1227
AluI AGCT 7 cut(s) 14, 68, 203, 383, 664, 946, 1227
Alw26I GTCTC 3 cut(s) 807, 833, 873
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 2 cut(s) 600, 1459
ApeKI GCWGC 2 cut(s) 158, 544
ApoI RAATTY 1 cut(s) 1346
AspLEI GCGC 2 cut(s) 217, 270
AspS9I GGNCC 2 cut(s) 40, 910
AvaII GGWCC 2 cut(s) 40, 910
BaeGI GKGCMC 1 cut(s) 686
BaeI ACNNNNGTAYC 2 cut(s) 1166, 1199
BanI GGYRCC 4 cut(s) 214, 681, 956, 1147
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 170, 531
BciT130I CCWGG 2 cut(s) 26, 744
BcoDI GTCTC 3 cut(s) 807, 833, 873
BfaI CTAG 9 cut(s) 675, 765, 920, 1004, 1268, 1359, 1389, 1428, 1446
BfmI CTRYAG 1 cut(s) 1101
BfoI RGCGCY 2 cut(s) 218, 271
BfuAI ACCTGC 1 cut(s) 355
BglII AGATCT 1 cut(s) 142
BisI GCNGC 6 cut(s) 159, 218, 245, 248, 545, 603
BlsI GCNGC 6 cut(s) 160, 219, 246, 249, 546, 604
BmcAI AGTACT 1 cut(s) 1432
Bme1390I CCNGG 2 cut(s) 26, 744
Bme18I GGWCC 2 cut(s) 40, 910
BmgT120I GGNCC 2 cut(s) 40, 910
BmiI GGNNCC 5 cut(s) 216, 683, 911, 958, 1149
BmrFI CCNGG 2 cut(s) 26, 744
BmsI GCATC 3 cut(s) 423, 1311, 1371
BoxI GACNNNNGTC 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 363, 680
Bpu10I CCTNAGC 2 cut(s) 69, 687
BpuEI CTTGAG 2 cut(s) 1055, 1243
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 2 cut(s) 807, 873
BsaJI CCNNGG 5 cut(s) 25, 603, 802, 1371, 1462
BsaXI ACNNNNNCTCC 8 cut(s) 358, 379, 388, 409, 514, 544, 1151, 1181
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 975, 1248, 1249, 1331
Bse3DI GCAATG 2 cut(s) 646, 698
BseBI CCWGG 2 cut(s) 26, 744
BseDI CCNNGG 5 cut(s) 25, 603, 802, 1371, 1462
BseGI GGATG 5 cut(s) 464, 846, 985, 1458, 1462
BseLI CCNNNNNNNGG 5 cut(s) 31, 975, 1248, 1249, 1331
BseMI GCAATG 2 cut(s) 646, 698
BseMII CTCAG 2 cut(s) 60, 678
BseRI GAGGAG 4 cut(s) 273, 306, 309, 366
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 2 cut(s) 170, 531
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 994
BshFI GGCC 2 cut(s) 602, 1461
BshNI GGYRCC 4 cut(s) 214, 681, 956, 1147
BsiEI CGRYCG 1 cut(s) 994
BslFI GGGAC 2 cut(s) 705, 911
BslI CCNNNNNNNGG 5 cut(s) 31, 975, 1248, 1249, 1331
BsmAI GTCTC 3 cut(s) 807, 833, 873
BsmFI GGGAC 2 cut(s) 705, 911
BsnI GGCC 2 cut(s) 602, 1461
Bso31I GGTCTC 2 cut(s) 807, 873
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 4 cut(s) 74, 142, 1074, 1131
Bsp19I CCATGG 1 cut(s) 802
BspANI GGCC 2 cut(s) 602, 1461
BspCNI CTCAG 2 cut(s) 61, 679
BspFNI CGCG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 5 cut(s) 216, 683, 911, 958, 1149
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 953
BspT107I GGYRCC 4 cut(s) 214, 681, 956, 1147
BspTNI GGTCTC 2 cut(s) 807, 873
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 646, 698
BssECI CCNNGG 5 cut(s) 25, 603, 802, 1371, 1462
BssMI GATC 4 cut(s) 74, 142, 1074, 1131
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 802, 1462
Bst2UI CCWGG 2 cut(s) 26, 744
Bst4CI ACNGT 2 cut(s) 988, 1283
Bst6I CTCTTC 2 cut(s) 887, 953
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 5 cut(s) 22, 163, 809, 944, 1265
BstDEI CTNAG 5 cut(s) 69, 93, 665, 687, 1244
BstDSI CCRYGG 2 cut(s) 603, 802
BstF5I GGATG 5 cut(s) 464, 846, 985, 1458, 1462
BstFNI CGCG 1 cut(s) 605
BstH2I RGCGCY 2 cut(s) 218, 271
BstHHI GCGC 2 cut(s) 217, 270
BstKTI GATC 4 cut(s) 77, 145, 1077, 1134
BstMAI GTCTC 3 cut(s) 807, 833, 873
BstMBI GATC 4 cut(s) 74, 142, 1074, 1131
BstMCI CGRYCG 1 cut(s) 994
BstMWI GCNNNNNNNGC 3 cut(s) 11, 226, 714
BstNI CCWGG 2 cut(s) 26, 744
BstNSI RCATGY 2 cut(s) 165, 717
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 24, 742
BstSFI CTRYAG 1 cut(s) 1101
BstSLI GKGCMC 1 cut(s) 686
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 2 cut(s) 170, 531
BstX2I RGATCY 2 cut(s) 74, 142
BstYI RGATCY 2 cut(s) 74, 142
BsuRI GGCC 2 cut(s) 602, 1461
BtgI CCRYGG 2 cut(s) 603, 802
BtsCI GGATG 5 cut(s) 464, 846, 985, 1458, 1462
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 1 cut(s) 1146
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 5 cut(s) 22, 163, 809, 944, 1265
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 1 cut(s) 1317
CfoI GCGC 2 cut(s) 217, 270
Cfr13I GGNCC 2 cut(s) 40, 910
Cfr42I CCGCGG 1 cut(s) 606
CseI GACGC 1 cut(s) 697
CsiI ACCWGGT 1 cut(s) 742
Csp6I GTAC 1 cut(s) 1431
CviAII CATG 4 cut(s) 162, 714, 803, 1318
CviQI GTAC 1 cut(s) 1431
DdeI CTNAG 5 cut(s) 69, 93, 665, 687, 1244
DinI GGCGCC 1 cut(s) 216
DpnI GATC 4 cut(s) 76, 144, 1076, 1133
DpnII GATC 4 cut(s) 74, 142, 1074, 1131
Eam1104I CTCTTC 2 cut(s) 887, 953
EarI CTCTTC 2 cut(s) 887, 953
Eco130I CCWWGG 2 cut(s) 802, 1462
Eco31I GGTCTC 2 cut(s) 807, 873
Eco47I GGWCC 2 cut(s) 40, 910
EcoRII CCWGG 2 cut(s) 24, 742
EcoT14I CCWWGG 2 cut(s) 802, 1462
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 802, 1462
FaeI CATG 4 cut(s) 165, 717, 806, 1321
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FaqI GGGAC 2 cut(s) 705, 911
FatI CATG 4 cut(s) 161, 713, 802, 1317
FauI CCCGC 2 cut(s) 234, 598
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 6 cut(s) 159, 218, 245, 248, 545, 603
FokI GGATG 5 cut(s) 451, 833, 992, 1465, 1469
Fsp4HI GCNGC 6 cut(s) 159, 218, 245, 248, 545, 603
FspBI CTAG 9 cut(s) 675, 765, 920, 1004, 1268, 1359, 1389, 1428, 1446
GlaI GCGC 2 cut(s) 216, 269
GluI GCNGC 6 cut(s) 159, 218, 245, 248, 545, 603
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 2 cut(s) 363, 680
HaeII RGCGCY 2 cut(s) 218, 271
HaeIII GGCC 2 cut(s) 602, 1461
HgaI GACGC 1 cut(s) 697
HhaI GCGC 2 cut(s) 217, 270
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 4 cut(s) 165, 717, 806, 1321
Hin6I GCGC 2 cut(s) 215, 268
HinP1I GCGC 2 cut(s) 215, 268
HincII GTYRAC 2 cut(s) 703, 991
HindII GTYRAC 2 cut(s) 703, 991
HinfI GANTC 6 cut(s) 618, 839, 1068, 1166, 1403, 1467
Hpy166II GTNNAC 3 cut(s) 498, 703, 991
Hpy188I TCNGA 4 cut(s) 598, 838, 872, 1375
Hpy188III TCNNGA 5 cut(s) 659, 1072, 1129, 1306, 1318
Hpy8I GTNNAC 3 cut(s) 498, 703, 991
Hpy99I CGWCG 3 cut(s) 424, 992, 1019
HpyAV CCTTC 6 cut(s) 53, 363, 576, 600, 802, 1037
HpyCH4III ACNGT 2 cut(s) 988, 1283
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 198, 627, 717, 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 226, 714
HpyF3I CTNAG 5 cut(s) 69, 93, 665, 687, 1244
HpySE526I ACGT 1 cut(s) 259
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 4 cut(s) 165, 717, 806, 1321
HspAI GCGC 2 cut(s) 215, 268
KasI GGCGCC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 606
Kzo9I GATC 4 cut(s) 74, 142, 1074, 1131
LguI GCTCTTC 1 cut(s) 953
LmnI GCTCC 2 cut(s) 661, 1083
Lsp1109I GCAGC 2 cut(s) 170, 531
LweI GCATC 3 cut(s) 423, 1311, 1371
MabI ACCWGGT 1 cut(s) 742
MaeI CTAG 9 cut(s) 675, 765, 920, 1004, 1268, 1359, 1389, 1428, 1446
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 5 cut(s) 131, 399, 423, 709, 728
MalI GATC 4 cut(s) 76, 144, 1076, 1133
MbiI CCGCTC 1 cut(s) 306
MboI GATC 4 cut(s) 74, 142, 1074, 1131
MboII GAAGA 2 cut(s) 904, 940
MflI RGATCY 2 cut(s) 74, 142
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 3 cut(s) 1107, 1346, 1438
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 5 cut(s) 627, 1062, 1175, 1412, 1476
MmeI TCCRAC 1 cut(s) 867
MseI TTAA 1 cut(s) 1257
MslI CAYNNNNRTG 2 cut(s) 651, 1182
MspA1I CMGCKG 2 cut(s) 544, 605
MspR9I CCNGG 2 cut(s) 26, 744
MvaI CCWGG 2 cut(s) 26, 744
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 11, 226, 714
NarI GGCGCC 1 cut(s) 215
NcoI CCATGG 1 cut(s) 802
NdeII GATC 4 cut(s) 74, 142, 1074, 1131
NlaIII CATG 4 cut(s) 165, 717, 806, 1321
NlaIV GGNNCC 5 cut(s) 216, 683, 911, 958, 1149
NmuCI GTSAC 3 cut(s) 399, 423, 709
NspI RCATGY 2 cut(s) 165, 717
PaeI GCATGC 1 cut(s) 165
PagI TCATGA 1 cut(s) 1317
PaqCI CACCTGC 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 953
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 1 cut(s) 839
PflFI GACNNNGTC 2 cut(s) 707, 986
PkrI GCNGC 6 cut(s) 160, 219, 246, 249, 546, 604
PleI GAGTC 5 cut(s) 626, 1062, 1174, 1411, 1475
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 5 cut(s) 626, 1062, 1174, 1411, 1475
PshAI GACNNNNGTC 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 24, 742
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 24, 742
PspN4I GGNNCC 5 cut(s) 216, 683, 911, 958, 1149
PspPI GGNCC 2 cut(s) 40, 910
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 2 cut(s) 74, 142
PsyI GACNNNGTC 2 cut(s) 707, 986
RsaI GTAC 1 cut(s) 1432
RsaNI GTAC 1 cut(s) 1431
RseI CAYNNNNRTG 2 cut(s) 651, 1182
SacII CCGCGG 1 cut(s) 606
SalI GTCGAC 1 cut(s) 989
SapI GCTCTTC 1 cut(s) 953
SaqAI TTAA 1 cut(s) 1257
SatI GCNGC 6 cut(s) 159, 218, 245, 248, 545, 603
Sau3AI GATC 4 cut(s) 74, 142, 1074, 1131
Sau96I GGNCC 2 cut(s) 40, 910
ScaI AGTACT 1 cut(s) 1432
SchI GAGTC 5 cut(s) 627, 1062, 1175, 1412, 1476
ScrFI CCNGG 2 cut(s) 26, 744
SduI GDGCHC 1 cut(s) 686
SexAI ACCWGGT 1 cut(s) 742
SfaNI GCATC 3 cut(s) 423, 1311, 1371
SfcI CTRYAG 1 cut(s) 1101
SfoI GGCGCC 1 cut(s) 216
Sfr303I CCGCGG 1 cut(s) 606
SgrBI CCGCGG 1 cut(s) 606
SinI GGWCC 2 cut(s) 40, 910
SmiMI CAYNNNNRTG 2 cut(s) 651, 1182
SmlI CTYRAG 2 cut(s) 1070, 1222
SmoI CTYRAG 2 cut(s) 1070, 1222
SphI GCATGC 1 cut(s) 165
Sse9I AATT 3 cut(s) 1107, 1346, 1438
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 9 cut(s) 675, 765, 920, 1004, 1268, 1359, 1389, 1428, 1446
StyD4I CCNGG 2 cut(s) 24, 742
StyI CCWWGG 2 cut(s) 802, 1462
TaaI ACNGT 2 cut(s) 988, 1283
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 990
TasI AATT 3 cut(s) 1107, 1346, 1438
TatI WGTACW 1 cut(s) 1430
TauI GCSGC 4 cut(s) 220, 247, 250, 605
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 1 cut(s) 1257
Tru9I TTAA 1 cut(s) 1257
TscAI CASTG 1 cut(s) 1146
TseFI GTSAC 3 cut(s) 399, 423, 709
TseI GCWGC 2 cut(s) 158, 544
Tsp45I GTSAC 3 cut(s) 399, 423, 709
TspDTI ATGAA 6 cut(s) 582, 856, 905, 940, 1341, 1451
TspGWI ACGGA 2 cut(s) 387, 1172
TspRI CASTG 1 cut(s) 1146
Tth111I GACNNNGTC 2 cut(s) 707, 986
VpaK11BI GGWCC 2 cut(s) 40, 910
XapI RAATTY 1 cut(s) 1346
XceI RCATGY 2 cut(s) 165, 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 972
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 9 cut(s) 675, 765, 920, 1004, 1268, 1359, 1389, 1428, 1446
ZrmI AGTACT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.