RchiOBHm_Chr6g0255721

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002618
Physical Location & Seq
Forward (+)
11121995 .. 11124015
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22934

Sequence Viewer

Length: 876 bp
ATGCATGCCCCAGCTCCTGCCCTGGTGGATGTGAGGTGGATTGTGTCACTTGTAAGCCAGTCTGTATGTGATCAACCCGGAGCAGTGTGCCAAGACCCTCGTTTCATAGGCGGTGACGACATTACCTTTTACTTCCACAGCAAGAAAAACCACAATTTCTGCCCCTTATCCGACTCCAACCTTCACATCAATGCCCACTTCATCGGCAAGCGAAATGCCAACATGAAACGCGACTTCACATGGGTCCAATCCATCGCCATCCTCTTTGGAAAACACCAACTCTTCATCGGCGCCCAAAAAACTACAACATGGGATGACTCCGTTGACCGCCTTGCTCTCTCCTTCGACGGCGAGCTAATCACCCTCTGGGAATCCGAAGGCGCTAGGTGGCAATCCGAGAGCTTCCCACATGTCTCATTCGTAAGGGTGGGTGACACCAACAATGTGATGGTTAAAGTTGAAGGCAAGTTTAGGATCACAGCCAGGGTTGTGCCTATAACTGAAGAAGACTCTAGAGTTCACAACTATGGTGTGACAAAAGATGATGCGTTGGCTCATCTTGATCTTGGGTTTAAGTTCTTCTCTTTGAGCAACCGAGTTAATGGTGTGTTGGGTCAGACTTACAGACCCGATTACGTGAGCCGGGTCAAGATTGGAGCCAACATGCCTGTGATGGGTGGTGACAGGGAGTTCCAAACTTCAGGACTTTTCGCTGCGGATTGCGCCATTGCTAGGTTTAATGGTGCTAGCGACTCTGAGAATGAAGGGTCTGTTGAGGGTTTGGAGTTTCCAAGCTTGAACTGTGCTAGTGGGATTGATGGTCGAGGAGTAGTGTGCAAGAGATACATGAGACATTGTTCGATCTGCATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

291

Amino Acids

32.32

Weight (kDa)

6.36

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 190 - 246 2.5e-30 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 1 cut(s) 231
AciI CCGC 3 cut(s) 111, 328, 716
AclWI GGATC 1 cut(s) 482
AcuI CTGAAG 2 cut(s) 522, 684
AcyI GRCGYC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 674, 732
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 2 cut(s) 461, 799
AjnI CCWGG 2 cut(s) 21, 482
AluBI AGCT 4 cut(s) 14, 355, 402, 795
AluI AGCT 4 cut(s) 14, 355, 402, 795
Alw26I GTCTC 2 cut(s) 418, 844
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 713
AspLEI GCGC 3 cut(s) 293, 383, 725
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 2 cut(s) 78, 644
AsuHPI GGTGA 4 cut(s) 125, 352, 443, 692
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 700
BccI CCATC 5 cut(s) 260, 266, 442, 667, 812
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 23, 484
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 2 cut(s) 78, 644
BcoDI GTCTC 2 cut(s) 418, 844
BfaI CTAG 5 cut(s) 384, 513, 732, 747, 807
BfoI RGCGCY 2 cut(s) 294, 384
BisI GCNGC 1 cut(s) 714
BlsI GCNGC 1 cut(s) 715
Bme1390I CCNGG 4 cut(s) 23, 78, 484, 644
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 245, 292, 658
BmrFI CCNGG 4 cut(s) 23, 78, 484, 644
BmsI GCATC 1 cut(s) 535
BmtI GCTAGC 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 78, 644
BsaAI YACGTR 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 21, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 674, 732
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 2 cut(s) 23, 484
BseDI CCNNGG 2 cut(s) 21, 483
BseGI GGATG 3 cut(s) 34, 258, 319
BseLI CCNNNNNNNGG 2 cut(s) 674, 732
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 840
BseXI GCAGC 1 cut(s) 700
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 78, 643
BslI CCNNNNNNNGG 2 cut(s) 674, 732
BsmAI GTCTC 2 cut(s) 418, 844
Bsp143I GATC 4 cut(s) 70, 474, 562, 861
BspACI CCGC 3 cut(s) 111, 328, 716
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 245, 292, 658
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 1 cut(s) 482
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 21, 483
BssMI GATC 4 cut(s) 70, 474, 562, 861
BssNI GRCGYC 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 23, 484
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 4 cut(s) 6, 209, 353, 748
BstDEI CTNAG 1 cut(s) 756
BstF5I GGATG 3 cut(s) 34, 258, 319
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 2 cut(s) 294, 384
BstHHI GCGC 3 cut(s) 293, 383, 725
BstKTI GATC 4 cut(s) 73, 477, 565, 864
BstMAI GTCTC 2 cut(s) 418, 844
BstMBI GATC 4 cut(s) 70, 474, 562, 861
BstMWI GCNNNNNNNGC 1 cut(s) 722
BstNI CCWGG 2 cut(s) 23, 484
BstNSI RCATGY 4 cut(s) 8, 413, 667, 871
BstSCI CCNGG 4 cut(s) 21, 76, 482, 642
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 34, 258, 319
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 4 cut(s) 6, 209, 353, 748
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 3 cut(s) 293, 383, 725
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 8 cut(s) 5, 223, 240, 309, 410, 664, 847, 868
CviJI RGCY 9 cut(s) 14, 57, 355, 402, 482, 554, 642, 659, 795
CviKI_1 RGCY 9 cut(s) 14, 57, 355, 402, 482, 554, 642, 659, 795
DdeI CTNAG 1 cut(s) 756
DinI GGCGCC 1 cut(s) 292
DpnI GATC 4 cut(s) 72, 476, 564, 863
DpnII GATC 4 cut(s) 70, 474, 562, 861
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 522, 684
EcoRII CCWGG 2 cut(s) 21, 482
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
FaeI CATG 8 cut(s) 8, 226, 243, 312, 413, 667, 850, 871
FatI CATG 8 cut(s) 4, 222, 239, 308, 409, 663, 846, 867
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 3 cut(s) 41, 245, 326
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 5 cut(s) 384, 513, 732, 747, 807
GlaI GCGC 3 cut(s) 292, 382, 724
GluI GCNGC 1 cut(s) 714
GsaI CCCAGC 1 cut(s) 14
HaeII RGCGCY 2 cut(s) 294, 384
HapII CCGG 2 cut(s) 78, 643
HhaI GCGC 3 cut(s) 293, 383, 725
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 8 cut(s) 8, 226, 243, 312, 413, 667, 850, 871
Hin6I GCGC 3 cut(s) 291, 381, 723
HinP1I GCGC 3 cut(s) 291, 381, 723
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 793
HinfI GANTC 5 cut(s) 173, 317, 371, 509, 752
HpaII CCGG 2 cut(s) 78, 643
HphI GGTGA 4 cut(s) 125, 352, 443, 692
Hpy166II GTNNAC 2 cut(s) 325, 520
Hpy188I TCNGA 5 cut(s) 172, 376, 397, 618, 757
Hpy188III TCNNGA 5 cut(s) 513, 560, 649, 702, 873
Hpy8I GTNNAC 2 cut(s) 325, 520
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 5 cut(s) 191, 352, 371, 455, 758
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 3 cut(s) 4, 837, 867
HpyF10VI GCNNNNNNNGC 1 cut(s) 722
HpyF3I CTNAG 1 cut(s) 756
HpySE526I ACGT 1 cut(s) 636
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 8 cut(s) 8, 226, 243, 312, 413, 667, 850, 871
HspAI GCGC 3 cut(s) 291, 381, 723
KasI GGCGCC 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 70, 474, 562, 861
LmnI GCTCC 3 cut(s) 19, 80, 656
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 535
MaeI CTAG 5 cut(s) 384, 513, 732, 747, 807
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 5 cut(s) 45, 113, 431, 532, 680
MalI GATC 4 cut(s) 72, 476, 564, 863
MboI GATC 4 cut(s) 70, 474, 562, 861
MboII GAAGA 4 cut(s) 274, 515, 518, 571
MluCI AATT 1 cut(s) 154
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 4 cut(s) 167, 311, 503, 746
MmeI TCCRAC 2 cut(s) 195, 201
MnlI CCTC 6 cut(s) 27, 108, 272, 374, 769, 818
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 453, 573, 600, 738
MslI CAYNNNNRTG 3 cut(s) 189, 525, 668
MspI CCGG 2 cut(s) 78, 643
MspR9I CCNGG 4 cut(s) 23, 78, 484, 644
MvaI CCWGG 2 cut(s) 23, 484
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 722
NarI GGCGCC 1 cut(s) 291
NciI CCSGG 2 cut(s) 78, 644
NdeII GATC 4 cut(s) 70, 474, 562, 861
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 8 cut(s) 8, 226, 243, 312, 413, 667, 850, 871
NlaIV GGNNCC 3 cut(s) 245, 292, 658
NmuCI GTSAC 5 cut(s) 45, 113, 431, 532, 680
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 4 cut(s) 8, 413, 667, 871
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 409
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 715
PleI GAGTC 4 cut(s) 167, 311, 503, 746
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 4 cut(s) 167, 311, 503, 746
Ppu21I YACGTR 1 cut(s) 637
PscI ACATGT 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 21, 482
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 21, 482
PspN4I GGNNCC 3 cut(s) 245, 292, 658
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 17
RseI CAYNNNNRTG 3 cut(s) 189, 525, 668
SaqAI TTAA 4 cut(s) 453, 573, 600, 738
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 4 cut(s) 70, 474, 562, 861
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 4 cut(s) 167, 311, 503, 746
ScrFI CCNGG 4 cut(s) 23, 78, 484, 644
SfaNI GCATC 1 cut(s) 535
SfoI GGCGCC 1 cut(s) 292
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 189, 525, 668
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 154
SsiI CCGC 3 cut(s) 111, 328, 716
SspDI GGCGCC 1 cut(s) 290
SspMI CTAG 5 cut(s) 384, 513, 732, 747, 807
StyD4I CCNGG 4 cut(s) 21, 76, 482, 642
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 1 cut(s) 639
TaqI TCGA 3 cut(s) 345, 823, 860
TasI AATT 1 cut(s) 154
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 4 cut(s) 453, 573, 600, 738
Tru9I TTAA 4 cut(s) 453, 573, 600, 738
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 5 cut(s) 45, 113, 431, 532, 680
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 5 cut(s) 45, 113, 431, 532, 680
TspDTI ATGAA 5 cut(s) 94, 190, 239, 274, 777
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 244
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 4 cut(s) 8, 413, 667, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 5 cut(s) 384, 513, 732, 747, 807
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.