Rroxscaffold_1G00025550

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002618
Physical Location & Seq
Reverse (-)
32047547 .. 32048377
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025550.1

Sequence Viewer

Length: 495 bp
ATGCCCATGTGGGAAACCACAAGTGGAATGGAAACCGAGGGATCTCCTAAACCAAAGGCTAAGAAAGTCAAGTGCCAAGACAAGAAGTTCTACAAGTGCTACCATAAAGATCTCTACGCCCGGCATGCCTCTGTACTTGTGTTGTGGATTGTAAGAAATGCAAAGTTGTTTGTAAGGCGCCGCCTCCCCCACCACCACCTCCTCCACCCCCGCCACCCGGACAACTCCACCCCTATCACCCCCTATCTCCACCGCGTCGTCACCACCGTTGCCTCCTACTACTACCCCATCACCACCGCCATCCCCTATTCCTACTCCATCACCACCGTCTTTGCCTCATACGTCTACACCGTCACCGCCGCCATCCACTACTCCTACCCCGTCAACCCCGCCACCCCTACTCCTACTCCATCACCACCGCCGGCTCCTACTCCTACCCATCGGTACCTTCTTTGTATCCTCCTCCACCACCGCCAACATCGAGGCCGCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

164

Amino Acids

18.92

Weight (kDa)

9.94

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 177, 444
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 255, 489
AclWI GGATC 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 2 cut(s) 135, 446
AfiI CCNNNNNNNGG 1 cut(s) 217
AlwI GGATC 1 cut(s) 49
AoxI GGCC 1 cut(s) 484
Asp718I GGTACC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 180
AsuC2I CCSGG 2 cut(s) 121, 218
AsuHPI GGTGA 6 cut(s) 229, 253, 283, 313, 346, 405
BanI GGYRCC 2 cut(s) 177, 444
BccI CCATC 6 cut(s) 296, 308, 326, 371, 418, 447
BciVI GTATCC 1 cut(s) 467
BcnI CCSGG 2 cut(s) 121, 218
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 467
BglII AGATCT 1 cut(s) 109
BisI GCNGC 3 cut(s) 181, 360, 487
BlsI GCNGC 3 cut(s) 182, 361, 488
Bme1390I CCNGG 2 cut(s) 121, 218
BmiI GGNNCC 3 cut(s) 179, 426, 446
BmrFI CCNGG 2 cut(s) 121, 218
BpuMI CCSGG 2 cut(s) 121, 218
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 36, 487
BsaXI ACNNNNNCTCC 4 cut(s) 385, 391, 415, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 421
BseDI CCNNGG 2 cut(s) 36, 487
BseGI GGATG 2 cut(s) 300, 363
BseLI CCNNNNNNNGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 191, 452
Bsh1236I CGCG 2 cut(s) 255, 489
BshFI GGCC 1 cut(s) 486
BshNI GGYRCC 2 cut(s) 177, 444
BsiSI CCGG 3 cut(s) 121, 218, 422
BslI CCNNNNNNNGG 1 cut(s) 217
BsnI GGCC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 41, 109
BspANI GGCC 1 cut(s) 486
BspFNI CGCG 2 cut(s) 255, 489
BspLI GGNNCC 3 cut(s) 179, 426, 446
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 2 cut(s) 177, 444
BsrFI RCCGGY 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 36, 487
BssMI GATC 2 cut(s) 41, 109
BssNI GRCGYC 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 268, 328, 352
BstACI GRCGYC 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 126, 423
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 2 cut(s) 300, 363
BstFNI CGCG 2 cut(s) 255, 489
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 44, 112
BstMBI GATC 2 cut(s) 41, 109
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 119, 216
BstUI CGCG 2 cut(s) 255, 489
BstX2I RGATCY 2 cut(s) 41, 109
BstYI RGATCY 2 cut(s) 41, 109
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 2 cut(s) 300, 363
Cac8I GCNNGC 2 cut(s) 126, 423
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 421
Cfr42I CCGCGG 1 cut(s) 490
CseI GACGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 134, 445
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 2 cut(s) 7, 125
CviJI RGCY 3 cut(s) 59, 425, 486
CviKI_1 RGCY 3 cut(s) 59, 425, 486
CviQI GTAC 2 cut(s) 134, 445
DdeI CTNAG 1 cut(s) 60
DinI GGCGCC 1 cut(s) 179
DpnI GATC 2 cut(s) 43, 111
DpnII GATC 2 cut(s) 41, 109
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
FaeI CATG 2 cut(s) 10, 128
FaiI YATR 4 cut(s) 8, 105, 126, 340
FatI CATG 2 cut(s) 6, 124
FauI CCCGC 3 cut(s) 218, 397, 482
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 181, 360, 487
FokI GGATG 2 cut(s) 287, 350
Fsp4HI GCNGC 3 cut(s) 181, 360, 487
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 181, 360, 487
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 486
HapII CCGG 3 cut(s) 121, 218, 422
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 10, 128
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HpaII CCGG 3 cut(s) 121, 218, 422
HphI GGTGA 6 cut(s) 229, 253, 283, 313, 346, 405
Hpy166II GTNNAC 2 cut(s) 346, 385
Hpy8I GTNNAC 2 cut(s) 346, 385
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 3 cut(s) 268, 328, 352
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 10, 128
HspAI GCGC 1 cut(s) 178
KasI GGCGCC 1 cut(s) 177
KpnI GGTACC 1 cut(s) 448
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
KspI CCGCGG 1 cut(s) 490
Kzo9I GATC 2 cut(s) 41, 109
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 3 cut(s) 134, 231, 435
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 259, 352
MalI GATC 2 cut(s) 43, 111
MboI GATC 2 cut(s) 41, 109
MflI RGATCY 2 cut(s) 41, 109
Mly113I GGCGCC 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 421
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 3 cut(s) 121, 218, 422
MspR9I CCNGG 2 cut(s) 121, 218
MvnI CGCG 2 cut(s) 255, 489
MwoI GCNNNNNNNGC 1 cut(s) 125
NaeI GCCGGC 1 cut(s) 423
NarI GGCGCC 1 cut(s) 178
NciI CCSGG 2 cut(s) 121, 218
NdeII GATC 2 cut(s) 41, 109
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 10, 128
NlaIV GGNNCC 3 cut(s) 179, 426, 446
NmuCI GTSAC 2 cut(s) 259, 352
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 348
PdiI GCCGGC 1 cut(s) 423
PkrI GCNGC 3 cut(s) 182, 361, 488
PluTI GGCGCC 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 179, 426, 446
PsuI RGATCY 2 cut(s) 41, 109
RsaI GTAC 2 cut(s) 135, 446
RsaNI GTAC 2 cut(s) 134, 445
SacII CCGCGG 1 cut(s) 490
SatI GCNGC 3 cut(s) 181, 360, 487
Sau3AI GATC 2 cut(s) 41, 109
ScrFI CCNGG 2 cut(s) 121, 218
SetI ASST 3 cut(s) 201, 345, 450
SfoI GGCGCC 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 490
SphI GCATGC 1 cut(s) 128
SspDI GGCGCC 1 cut(s) 177
StyD4I CCNGG 2 cut(s) 119, 216
TaaI ACNGT 3 cut(s) 268, 328, 352
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 481
TatI WGTACW 1 cut(s) 133
TauI GCSGC 3 cut(s) 183, 362, 489
TseFI GTSAC 2 cut(s) 259, 352
Tsp45I GTSAC 2 cut(s) 259, 352
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.