Rmu_sc0003653.1_g000019

Root cap

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003653.1
Physical Location & Seq
Forward (+)
75429 .. 77298
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003653.1_g000019.1.cds

Sequence Viewer

Length: 1461 bp
atggggcgcctgggtgcggttttggtccttctgttgattgcttttgttgtagctgagggatctcctaaaccaaaggctaagaaagtcaagtgccaagacaagaagttctacaagtgttaccataaagatctctactgcccagcagcatgcctccgcacttgtgttgtggattgtaagaaatgcaaagctgtttgtaaggcgccgcctccaccaccaccgccgccgccgcccagacgaaagtggcaccacccaccccctcctcccccaaagagttatcaccactcaccgcctcctcctcccaagacttatccttcaccaccacctgccccttcagttgttcctactccccctcctccagctacaactccacctccgtcaccccctatctctaccccgtcgtcacaaccgatgcctcctgctactaccccatcaccaccgccatcccctattactactccatcaccacctttgtccacaccatcatcaccgccaccccctactcctactccatcaccaccgctgccccctacttctacaccaccttctttctatcctccaccaccgccttcatcagaggccgcgggtgaaaagagagtcaaatgcaagaataagaactaccctcattgctatggtctggagctaagttgtcctagtgggtgccctgagcaatgtgaagttgactgcgtcacatgcagtcccgtttgtaactgcaacaaaccaggtgctgtttgccaagaccctagatttattggtggtgatggtataaccttctacttccatggcaagcgagaccaagacttctgtctcgtatctgattccaacatccacatcaacgcccatttcatcggaaaaagagaccaaaatatgaagagggacttcacttgggtccaatctgtaggtatcctctttgacaatcgcaagctcttcataggtgccaaaccaacctccacttgggatgacaccgtcgaccgcctaaccctagccattgacgacgaaaccattagccttgccgacaacgaaggcgcatattggcaatcacaaggactcaagatcacaaggagcaagaacacaaatgctgtagaaattgaagctgaagggaacttcaagatcaaagcagtggtggtgccgataacggagaaagagtcggtgatacacaggtatgggattacacaggaggattgctttgctcaccttgacttgagcttcaagttttatgccctaagtggggaagttaatggcgtgctaggacagacatacgctgagaactacgttagtagggtcaagatgggtgtcgtgatgcctgttttgggtggcgatagagaattttcatcgtctagcatctttgcctcggattgtgctgttgctaggtttagcggtgagtctagtgaaaagtccaagtatgctagtactatgaattgcgctagtgggatggatggccgtggagttgtttgtaagaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

52.58

Weight (kDa)

8.75

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccB1I GGYRCC 6 cut(s) 6, 199, 243, 657, 932, 1123
AccI GTMKAC 1 cut(s) 966
AccII CGCG 1 cut(s) 581
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 1435
AcsI RAATTY 1 cut(s) 1322
AcuI CTGAAG 2 cut(s) 315, 1113
AcyI GRCGYC 2 cut(s) 7, 200
AfaI GTAC 1 cut(s) 1408
AfiI CCNNNNNNNGG 5 cut(s) 16, 951, 1224, 1225, 1307
AgsI TTSAA 3 cut(s) 1088, 1105, 1207
AjnI CCWGG 2 cut(s) 9, 718
AluBI AGCT 7 cut(s) 53, 188, 359, 640, 922, 1091, 1203
AluI AGCT 7 cut(s) 53, 188, 359, 640, 922, 1091, 1203
Alw26I GTCTC 3 cut(s) 783, 809, 849
AlwI GGATC 1 cut(s) 67
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 2 cut(s) 576, 1435
ApeKI GCWGC 2 cut(s) 143, 520
ApoI RAATTY 1 cut(s) 1322
AspLEI GCGC 4 cut(s) 9, 202, 1025, 1421
AspS9I GGNCC 2 cut(s) 25, 886
AvaII GGWCC 2 cut(s) 25, 886
BaeGI GKGCMC 1 cut(s) 662
BaeI ACNNNNGTAYC 2 cut(s) 1142, 1175
BanI GGYRCC 6 cut(s) 6, 199, 243, 657, 932, 1123
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 155, 507
BccI CCATC 9 cut(s) 436, 448, 466, 487, 517, 752, 1279, 1423, 1427
BceAI ACGGC 1 cut(s) 1422
BciT130I CCWGG 2 cut(s) 11, 720
BciVI GTATCC 1 cut(s) 911
BcoDI GTCTC 3 cut(s) 783, 809, 849
BfaI CTAG 9 cut(s) 651, 741, 980, 1244, 1335, 1365, 1383, 1404, 1422
BfmI CTRYAG 2 cut(s) 894, 1077
BfoI RGCGCY 2 cut(s) 10, 203
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 127
BisI GCNGC 7 cut(s) 144, 203, 221, 224, 227, 521, 579
BlsI GCNGC 7 cut(s) 145, 204, 222, 225, 228, 522, 580
BmcAI AGTACT 1 cut(s) 1408
Bme1390I CCNGG 2 cut(s) 11, 720
Bme18I GGWCC 2 cut(s) 25, 886
BmgT120I GGNCC 2 cut(s) 25, 886
BmiI GGNNCC 7 cut(s) 8, 201, 245, 659, 887, 934, 1125
BmrFI CCNGG 2 cut(s) 11, 720
BmsI GCATC 3 cut(s) 399, 1287, 1347
BoxI GACNNNNGTC 1 cut(s) 801
BpmI CTGGAG 2 cut(s) 339, 656
Bpu10I CCTNAGC 2 cut(s) 54, 663
BpuEI CTTGAG 2 cut(s) 1031, 1219
BsaHI GRCGYC 2 cut(s) 7, 200
BsaI GGTCTC 2 cut(s) 783, 849
BsaJI CCNNGG 5 cut(s) 10, 579, 778, 1347, 1438
BsaXI ACNNNNNCTCC 8 cut(s) 334, 355, 364, 385, 490, 520, 1127, 1157
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 951, 1224, 1225, 1307
Bse3DI GCAATG 2 cut(s) 622, 674
BseBI CCWGG 2 cut(s) 11, 720
BseDI CCNNGG 5 cut(s) 10, 579, 778, 1347, 1438
BseGI GGATG 5 cut(s) 440, 822, 961, 1434, 1438
BseLI CCNNNNNNNGG 5 cut(s) 16, 951, 1224, 1225, 1307
BseMI GCAATG 2 cut(s) 622, 674
BseMII CTCAG 3 cut(s) 45, 654, 1251
BseRI GAGGAG 4 cut(s) 249, 282, 285, 342
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 2 cut(s) 155, 507
BseYI CCCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 581
Bsh1285I CGRYCG 1 cut(s) 970
BshFI GGCC 2 cut(s) 578, 1437
BshNI GGYRCC 6 cut(s) 6, 199, 243, 657, 932, 1123
BsiEI CGRYCG 1 cut(s) 970
BslFI GGGAC 2 cut(s) 681, 887
BslI CCNNNNNNNGG 5 cut(s) 16, 951, 1224, 1225, 1307
BsmAI GTCTC 3 cut(s) 783, 809, 849
BsmFI GGGAC 2 cut(s) 681, 887
BsnI GGCC 2 cut(s) 578, 1437
Bso31I GGTCTC 2 cut(s) 783, 849
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 4 cut(s) 59, 127, 1050, 1107
Bsp19I CCATGG 1 cut(s) 778
BspANI GGCC 2 cut(s) 578, 1437
BspCNI CTCAG 3 cut(s) 46, 655, 1252
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 7 cut(s) 8, 201, 245, 659, 887, 934, 1125
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 929
BspT107I GGYRCC 6 cut(s) 6, 199, 243, 657, 932, 1123
BspTNI GGTCTC 2 cut(s) 783, 849
BsrDI GCAATG 2 cut(s) 622, 674
BssECI CCNNGG 5 cut(s) 10, 579, 778, 1347, 1438
BssMI GATC 4 cut(s) 59, 127, 1050, 1107
BssNI GRCGYC 2 cut(s) 7, 200
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 2 cut(s) 11, 720
Bst4CI ACNGT 1 cut(s) 964
Bst6I CTCTTC 2 cut(s) 863, 929
BstACI GRCGYC 2 cut(s) 7, 200
BstC8I GCNNGC 4 cut(s) 148, 785, 920, 1241
BstDEI CTNAG 6 cut(s) 54, 78, 641, 663, 1220, 1260
BstDSI CCRYGG 3 cut(s) 579, 778, 1438
BstF5I GGATG 5 cut(s) 440, 822, 961, 1434, 1438
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 2 cut(s) 10, 203
BstHHI GCGC 4 cut(s) 9, 202, 1025, 1421
BstKTI GATC 4 cut(s) 62, 130, 1053, 1110
BstMAI GTCTC 3 cut(s) 783, 809, 849
BstMBI GATC 4 cut(s) 59, 127, 1050, 1107
BstMCI CGRYCG 1 cut(s) 970
BstMWI GCNNNNNNNGC 2 cut(s) 226, 690
BstNI CCWGG 2 cut(s) 11, 720
BstNSI RCATGY 2 cut(s) 150, 693
BstPAI GACNNNNGTC 1 cut(s) 801
BstSCI CCNGG 2 cut(s) 9, 718
BstSFI CTRYAG 2 cut(s) 894, 1077
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 2 cut(s) 155, 507
BstX2I RGATCY 2 cut(s) 59, 127
BstYI RGATCY 2 cut(s) 59, 127
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 2 cut(s) 578, 1437
BtgI CCRYGG 3 cut(s) 579, 778, 1438
BtsCI GGATG 5 cut(s) 440, 822, 961, 1434, 1438
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 1 cut(s) 1122
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 148, 785, 920, 1241
CaiI CAGNNNCTG 1 cut(s) 725
CfoI GCGC 4 cut(s) 9, 202, 1025, 1421
Cfr13I GGNCC 2 cut(s) 25, 886
Cfr42I CCGCGG 1 cut(s) 582
CseI GACGC 1 cut(s) 673
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 1 cut(s) 1407
CviAII CATG 3 cut(s) 147, 690, 779
CviQI GTAC 1 cut(s) 1407
DdeI CTNAG 6 cut(s) 54, 78, 641, 663, 1220, 1260
DinI GGCGCC 2 cut(s) 8, 201
DpnI GATC 4 cut(s) 61, 129, 1052, 1109
DpnII GATC 4 cut(s) 59, 127, 1050, 1107
EaeI YGGCCR 1 cut(s) 1435
Eam1104I CTCTTC 2 cut(s) 863, 929
EarI CTCTTC 2 cut(s) 863, 929
Eco130I CCWWGG 1 cut(s) 778
Eco31I GGTCTC 2 cut(s) 783, 849
Eco47I GGWCC 2 cut(s) 25, 886
Eco57I CTGAAG 2 cut(s) 315, 1113
EcoRII CCWGG 2 cut(s) 9, 718
EcoT14I CCWWGG 1 cut(s) 778
EgeI GGCGCC 2 cut(s) 8, 201
EheI GGCGCC 2 cut(s) 8, 201
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 3 cut(s) 150, 693, 782
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 2 cut(s) 681, 887
FatI CATG 3 cut(s) 146, 689, 778
FauI CCCGC 1 cut(s) 574
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 7 cut(s) 144, 203, 221, 224, 227, 521, 579
FokI GGATG 5 cut(s) 427, 809, 968, 1441, 1445
Fsp4HI GCNGC 7 cut(s) 144, 203, 221, 224, 227, 521, 579
FspBI CTAG 9 cut(s) 651, 741, 980, 1244, 1335, 1365, 1383, 1404, 1422
GlaI GCGC 4 cut(s) 8, 201, 1024, 1420
GluI GCNGC 7 cut(s) 144, 203, 221, 224, 227, 521, 579
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 2 cut(s) 339, 656
HaeII RGCGCY 2 cut(s) 10, 203
HaeIII GGCC 2 cut(s) 578, 1437
HgaI GACGC 1 cut(s) 673
HhaI GCGC 4 cut(s) 9, 202, 1025, 1421
Hin1I GRCGYC 2 cut(s) 7, 200
Hin1II CATG 3 cut(s) 150, 693, 782
Hin6I GCGC 4 cut(s) 7, 200, 1023, 1419
HinP1I GCGC 4 cut(s) 7, 200, 1023, 1419
HincII GTYRAC 2 cut(s) 679, 967
HindII GTYRAC 2 cut(s) 679, 967
HinfI GANTC 5 cut(s) 594, 815, 1044, 1142, 1379
Hpy166II GTNNAC 3 cut(s) 474, 679, 967
Hpy188I TCNGA 4 cut(s) 574, 814, 848, 1351
Hpy188III TCNNGA 5 cut(s) 635, 1048, 1105, 1282, 1294
Hpy8I GTNNAC 3 cut(s) 474, 679, 967
Hpy99I CGWCG 3 cut(s) 400, 968, 995
HpyAV CCTTC 8 cut(s) 38, 321, 339, 552, 576, 778, 1013, 1088
HpyCH4III ACNGT 1 cut(s) 964
HpyCH4IV ACGT 1 cut(s) 1269
HpyCH4V TGCA 4 cut(s) 183, 603, 693, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 690
HpyF3I CTNAG 6 cut(s) 54, 78, 641, 663, 1220, 1260
HpySE526I ACGT 1 cut(s) 1269
Hsp92I GRCGYC 2 cut(s) 7, 200
Hsp92II CATG 3 cut(s) 150, 693, 782
HspAI GCGC 4 cut(s) 7, 200, 1023, 1419
KasI GGCGCC 2 cut(s) 6, 199
KspI CCGCGG 1 cut(s) 582
Kzo9I GATC 4 cut(s) 59, 127, 1050, 1107
LguI GCTCTTC 1 cut(s) 929
LmnI GCTCC 2 cut(s) 637, 1059
Lsp1109I GCAGC 2 cut(s) 155, 507
LweI GCATC 3 cut(s) 399, 1287, 1347
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 9 cut(s) 651, 741, 980, 1244, 1335, 1365, 1383, 1404, 1422
MaeII ACGT 1 cut(s) 1269
MaeIII GTNAC 5 cut(s) 116, 375, 399, 685, 704
MalI GATC 4 cut(s) 61, 129, 1052, 1109
MboI GATC 4 cut(s) 59, 127, 1050, 1107
MboII GAAGA 2 cut(s) 880, 916
MflI RGATCY 2 cut(s) 59, 127
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 3 cut(s) 1083, 1322, 1414
Mly113I GGCGCC 2 cut(s) 7, 200
MlyI GAGTC 4 cut(s) 603, 1038, 1151, 1388
MmeI TCCRAC 1 cut(s) 843
MseI TTAA 1 cut(s) 1233
MslI CAYNNNNRTG 2 cut(s) 627, 1158
MspA1I CMGCKG 2 cut(s) 520, 581
MspR9I CCNGG 2 cut(s) 11, 720
MvaI CCWGG 2 cut(s) 11, 720
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 226, 690
NarI GGCGCC 2 cut(s) 7, 200
NcoI CCATGG 1 cut(s) 778
NdeII GATC 4 cut(s) 59, 127, 1050, 1107
NlaIII CATG 3 cut(s) 150, 693, 782
NlaIV GGNNCC 7 cut(s) 8, 201, 245, 659, 887, 934, 1125
NmuCI GTSAC 3 cut(s) 375, 399, 685
NspI RCATGY 2 cut(s) 150, 693
PaeI GCATGC 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 929
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PfeI GAWTC 1 cut(s) 815
PflFI GACNNNGTC 2 cut(s) 683, 962
PkrI GCNGC 7 cut(s) 145, 204, 222, 225, 228, 522, 580
PleI GAGTC 4 cut(s) 602, 1038, 1150, 1387
PluTI GGCGCC 2 cut(s) 10, 203
PpsI GAGTC 4 cut(s) 602, 1038, 1150, 1387
PshAI GACNNNNGTC 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 9, 718
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 2 cut(s) 9, 718
PspN4I GGNNCC 7 cut(s) 8, 201, 245, 659, 887, 934, 1125
PspPI GGNCC 2 cut(s) 25, 886
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 2 cut(s) 59, 127
PsyI GACNNNGTC 2 cut(s) 683, 962
RsaI GTAC 1 cut(s) 1408
RsaNI GTAC 1 cut(s) 1407
RseI CAYNNNNRTG 2 cut(s) 627, 1158
SacII CCGCGG 1 cut(s) 582
SalI GTCGAC 1 cut(s) 965
SapI GCTCTTC 1 cut(s) 929
SaqAI TTAA 1 cut(s) 1233
SatI GCNGC 7 cut(s) 144, 203, 221, 224, 227, 521, 579
Sau3AI GATC 4 cut(s) 59, 127, 1050, 1107
Sau96I GGNCC 2 cut(s) 25, 886
ScaI AGTACT 1 cut(s) 1408
SchI GAGTC 4 cut(s) 603, 1038, 1151, 1388
ScrFI CCNGG 2 cut(s) 11, 720
SduI GDGCHC 1 cut(s) 662
SexAI ACCWGGT 1 cut(s) 718
SfaNI GCATC 3 cut(s) 399, 1287, 1347
SfcI CTRYAG 2 cut(s) 894, 1077
SfoI GGCGCC 2 cut(s) 8, 201
Sfr303I CCGCGG 1 cut(s) 582
SgrBI CCGCGG 1 cut(s) 582
SinI GGWCC 2 cut(s) 25, 886
SmiMI CAYNNNNRTG 2 cut(s) 627, 1158
SmlI CTYRAG 2 cut(s) 1046, 1198
SmoI CTYRAG 2 cut(s) 1046, 1198
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 1083, 1322, 1414
SspDI GGCGCC 2 cut(s) 6, 199
SspMI CTAG 9 cut(s) 651, 741, 980, 1244, 1335, 1365, 1383, 1404, 1422
StyD4I CCNGG 2 cut(s) 9, 718
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 1 cut(s) 964
TaiI ACGT 1 cut(s) 1272
TaqI TCGA 1 cut(s) 966
TasI AATT 3 cut(s) 1083, 1322, 1414
TatI WGTACW 1 cut(s) 1406
TauI GCSGC 5 cut(s) 205, 223, 226, 229, 581
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 1 cut(s) 1233
Tru9I TTAA 1 cut(s) 1233
TscAI CASTG 1 cut(s) 1122
TseFI GTSAC 3 cut(s) 375, 399, 685
TseI GCWGC 2 cut(s) 143, 520
Tsp45I GTSAC 3 cut(s) 375, 399, 685
TspDTI ATGAA 6 cut(s) 558, 832, 881, 916, 1317, 1427
TspGWI ACGGA 2 cut(s) 363, 1148
TspRI CASTG 1 cut(s) 1122
Tth111I GACNNNGTC 2 cut(s) 683, 962
VpaK11BI GGWCC 2 cut(s) 25, 886
XapI RAATTY 1 cut(s) 1322
XceI RCATGY 2 cut(s) 150, 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 948
XmiI GTMKAC 1 cut(s) 966
XspI CTAG 9 cut(s) 651, 741, 980, 1244, 1335, 1365, 1383, 1404, 1422
ZrmI AGTACT 1 cut(s) 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.