Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002712

Physical Location & Seq

Genomic Coordinates Reverse (-)

24586887 .. 24588348

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

TTAAGAAGATTTTCTTGGCGTGAAATTCAGCTTGCTACAGATAACTTCGATGAAAGCAACATAATTGGACAAGGGGGCTTTGGAAGAGTTTACAAAGGTGTCCTCTCAGACAATGTAAAGGTTGCAGTGAAACGCCTTACAGATTATAACAGTCCTGGTGGAGAGGCTGCATTCTTGAGAGAAGTACAACTCATTAGCGTTGCAGTTCACAAGAATCTTTTACGGTTGATTGGATTTTGTACAACTTCATCCGAGAGAATCCTTGTTTATCCATTCATGAAAAATCTTAGTGTTGCGTATCGCTTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGTCAACAAGGAAACGCATCGCTTTTGGTGCAGCCCATGGCTTAGAGTATTTACATGAGCATTGTAATCCTAAGATTATACACCGTGACTTAAAGGCTGCAAACATTCTTCTAGATGATAATTTTGAGCCCGTTCTTGGAGATTTTGGGCTAGCAAAGCTGGTTGATACAAAATCAACTCACGTTACCACTCAAGTGCGTGGTACCATGGGTCATATTGCCCCAGAATATTTGTCCACTGGAAAATCGTCAGAAAAGACTGATGTTTTTGGATATGGTATCACACTTCTCGAACTTGTCACTGGTCAGCGTGCTATAGATTTTGCTCGGCTTGAAGAAGAGGAGGATGTTCTTCTGCTTGATCATGTAAGATTCCTGAACTCTTTGGACATATCTATACTTGATGGGATTCTTGTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

254

Amino Acids

28.38

Weight (kDa)

6.79

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63710 AT5G63710 AT5G63710 AT5G63710
fragaria_vesca	FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740 FvH4_1g25740
malus_domestica	MD15G1139900.v1.1
prunus_persica	Prupe.4G284100_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G284400_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1 Prupe.4G285600_v2.0.a1
pyrus_communis	pycom15g12640
rosa_chinensis	RchiOBHm_Chr3g0484651
rosa_laevigata	RLG00000023209
rosa_multiflora	Rmu_sc0005467.1_g000001 Rmu_sc0006192.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397540
rosa_rugosa	Rorug03G0212900 Rorug03G0213000 Rorug03G0213100 Rorug03G0213200
rosa_samantha	Rh3AG263000 Rh3AG263200 Rh3BG298600 Rh3CG295700 Rh3CG295900 Rh3DG291900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	3 cut(s)	186, 241, 544
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	154, 319
AjuI	GAANNNNNNNTTGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	31, 499
AluI	AGCT	2 cut(s)	31, 499
ApeKI	GCWGC	3 cut(s)	167, 371, 437
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	154, 383, 424
BccI	CCATC	1 cut(s)	737
BciT130I	CCWGG	2 cut(s)	156, 321
BclI	TGATCA	1 cut(s)	700
BfaI	CTAG	2 cut(s)	452, 491
BfmI	CTRYAG	2 cut(s)	36, 654
BisI	GCNGC	3 cut(s)	168, 372, 438
BlsI	GCNGC	3 cut(s)	169, 373, 439
Bme1390I	CCNGG	2 cut(s)	156, 321
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	2 cut(s)	156, 321
BmsI	GCATC	1 cut(s)	366
BmtI	GCTAGC	1 cut(s)	494
BpuEI	CTTGAG	3 cut(s)	196, 325, 516
BsaJI	CCNNGG	2 cut(s)	376, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	344, 583, 646
BseBI	CCWGG	2 cut(s)	156, 321
BseDI	CCNNGG	2 cut(s)	376, 546
BseGI	GGATG	2 cut(s)	248, 691
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	344, 583, 646
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	154, 383, 424
BsgI	GTGCAG	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	700
Bsp19I	CCATGG	2 cut(s)	376, 546
BspCNI	CTCAG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	344, 583, 646
BssECI	CCNNGG	2 cut(s)	376, 546
BssMI	GATC	1 cut(s)	700
BssT1I	CCWWGG	2 cut(s)	376, 546
Bst2UI	CCWGG	2 cut(s)	156, 321
Bst4CI	ACNGT	3 cut(s)	152, 225, 425
Bst6I	CTCTTC	2 cut(s)	79, 672
BstAUI	TGTACA	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	33, 492, 651
BstDEI	CTNAG	4 cut(s)	106, 287, 382, 411
BstDSI	CCRYGG	2 cut(s)	376, 546
BstF5I	GGATG	2 cut(s)	248, 691
BstKTI	GATC	1 cut(s)	703
BstMBI	GATC	1 cut(s)	700
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 496
BstNI	CCWGG	2 cut(s)	156, 321
BstSCI	CCNGG	2 cut(s)	154, 319
BstSFI	CTRYAG	2 cut(s)	36, 654
BstV1I	GCAGC	3 cut(s)	154, 383, 424
BtgI	CCRYGG	2 cut(s)	376, 546
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	248, 691
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	3 cut(s)	132, 576, 639
Cac8I	GCNNGC	3 cut(s)	33, 492, 651
CciI	TCATGA	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	319
Csp6I	GTAC	3 cut(s)	185, 240, 543
CviAII	CATG	5 cut(s)	277, 377, 395, 547, 704
CviQI	GTAC	3 cut(s)	185, 240, 543
DdeI	CTNAG	4 cut(s)	106, 287, 382, 411
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	79, 672
EarI	CTCTTC	2 cut(s)	79, 672
Eco130I	CCWWGG	2 cut(s)	376, 546
Eco24I	GRGCYC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	154, 319
EcoT14I	CCWWGG	2 cut(s)	376, 546
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	376, 546
FaeI	CATG	5 cut(s)	280, 380, 398, 550, 707
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	5 cut(s)	276, 376, 394, 546, 703
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	168, 372, 438
FokI	GGATG	2 cut(s)	235, 698
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	3 cut(s)	168, 372, 438
FspBI	CTAG	2 cut(s)	452, 491
GluI	GCNGC	3 cut(s)	168, 372, 438
Hin1II	CATG	5 cut(s)	280, 380, 398, 550, 707
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	4 cut(s)	214, 258, 711, 748
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	91, 208, 345, 576
Hpy188I	TCNGA	3 cut(s)	109, 253, 592
Hpy188III	TCNNGA	5 cut(s)	175, 277, 452, 629, 715
Hpy8I	GTNNAC	4 cut(s)	91, 208, 345, 576
HpyCH4III	ACNGT	3 cut(s)	152, 225, 425
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	5 cut(s)	125, 170, 203, 371, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 496
HpyF3I	CTNAG	4 cut(s)	106, 287, 382, 411
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	5 cut(s)	280, 380, 398, 550, 707
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	1 cut(s)	700
Lsp1109I	GCAGC	3 cut(s)	154, 383, 424
LweI	GCATC	1 cut(s)	366
MabI	ACCWGGT	1 cut(s)	319
MaeI	CTAG	2 cut(s)	452, 491
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	425, 523, 637
MalI	GATC	1 cut(s)	702
MboI	GATC	1 cut(s)	700
MboII	GAAGA	6 cut(s)	18, 96, 440, 683, 686, 689
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	24, 63, 460
MnlI	CCTC	4 cut(s)	113, 157, 673, 676
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	4 cut(s)	2, 314, 431, 760
MslI	CAYNNNNRTG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	156, 321
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	156, 321
MwoI	GCNNNNNNNGC	2 cut(s)	368, 496
NcoI	CCATGG	2 cut(s)	376, 546
NdeII	GATC	1 cut(s)	700
NheI	GCTAGC	1 cut(s)	490
NlaIII	CATG	5 cut(s)	280, 380, 398, 550, 707
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	425, 637
OliI	CACNNNNGTG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	4 cut(s)	214, 258, 711, 748
PkrI	GCNGC	3 cut(s)	169, 373, 439
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	154, 319
PspGI	CCWGG	2 cut(s)	154, 319
PspN4I	GGNNCC	1 cut(s)	544
RsaI	GTAC	3 cut(s)	186, 241, 544
RsaNI	GTAC	3 cut(s)	185, 240, 543
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	4 cut(s)	2, 314, 431, 760
SatI	GCNGC	3 cut(s)	168, 372, 438
Sau3AI	GATC	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	156, 321
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	6 cut(s)	33, 100, 123, 322, 501, 525
SexAI	ACCWGGT	1 cut(s)	319
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	36, 654
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	175, 304, 531
SmoI	CTYRAG	3 cut(s)	175, 304, 531
Sse9I	AATT	3 cut(s)	24, 63, 460
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	452, 491
StyD4I	CCNGG	2 cut(s)	154, 319
StyI	CCWWGG	2 cut(s)	376, 546
TaaI	ACNGT	3 cut(s)	152, 225, 425
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	48, 630
TasI	AATT	3 cut(s)	24, 63, 460
TatI	WGTACW	2 cut(s)	184, 239
TfiI	GAWTC	4 cut(s)	214, 258, 711, 748
Tru1I	TTAA	4 cut(s)	2, 314, 431, 760
Tru9I	TTAA	4 cut(s)	2, 314, 431, 760
TscAI	CASTG	3 cut(s)	132, 583, 646
TseFI	GTSAC	2 cut(s)	425, 637
TseI	GCWGC	3 cut(s)	167, 371, 437
Tsp45I	GTSAC	2 cut(s)	425, 637
TspDTI	ATGAA	4 cut(s)	66, 237, 265, 293
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	3 cut(s)	132, 583, 646
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	2 cut(s)	452, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.